Wall clock time and date at job start Tue Mar 31 2020 08:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46500 * 109.47033 * 2 1 4 4 C 1.46503 * 120.00046 * 270.00337 * 3 2 1 5 5 C 1.52999 * 109.46669 * 269.99626 * 4 3 2 6 6 C 1.53001 * 109.47094 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.47311 * 180.02562 * 6 5 4 8 8 C 1.34774 * 120.00015 * 89.99748 * 3 2 1 9 9 O 1.21284 * 120.00090 * 180.02562 * 8 3 2 10 10 C 1.50706 * 119.99980 * 0.02562 * 8 3 2 11 11 C 1.52994 * 109.46995 * 179.97438 * 10 8 3 12 12 H 1.08998 * 109.47363 * 54.05802 * 11 10 8 13 13 C 1.50705 * 109.47281 * 294.05789 * 11 10 8 14 14 H 1.07999 * 119.99468 * 330.08103 * 13 11 10 15 15 C 1.37873 * 120.00025 * 150.08844 * 13 11 10 16 16 N 1.31515 * 120.00158 * 6.56401 * 15 13 11 17 17 Si 1.86805 * 119.99647 * 186.56809 * 15 13 11 18 18 H 1.48498 * 109.47129 * 269.99471 * 17 15 13 19 19 H 1.48498 * 109.47291 * 29.99590 * 17 15 13 20 20 H 1.48503 * 109.46813 * 149.99580 * 17 15 13 21 21 C 1.50704 * 109.47072 * 174.05777 * 11 10 8 22 22 C 1.38232 * 120.00156 * 64.29986 * 21 11 10 23 23 C 1.38227 * 120.00423 * 179.81276 * 22 21 11 24 24 C 1.38238 * 119.99674 * 0.39266 * 23 22 21 25 25 C 1.38237 * 119.99909 * 359.86442 * 24 23 22 26 26 C 1.38229 * 119.99861 * 359.94762 * 25 24 23 27 27 H 1.09001 * 109.46581 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46969 * 300.00187 * 1 2 3 29 29 H 1.09001 * 109.46648 * 60.00133 * 1 2 3 30 30 H 1.09005 * 109.46818 * 240.00107 * 2 1 3 31 31 H 1.08993 * 109.46800 * 120.00130 * 2 1 3 32 32 H 1.08997 * 109.47337 * 29.99529 * 4 3 2 33 33 H 1.08998 * 109.47138 * 150.00271 * 4 3 2 34 34 H 1.08996 * 109.47480 * 300.00452 * 5 4 3 35 35 H 1.09005 * 109.47430 * 60.00231 * 5 4 3 36 36 H 1.08997 * 109.47169 * 300.00060 * 6 5 4 37 37 H 1.08995 * 109.47249 * 59.99886 * 6 5 4 38 38 H 0.96700 * 114.00337 * 180.02562 * 7 6 5 39 39 H 1.08999 * 109.46642 * 59.99829 * 10 8 3 40 40 H 1.09002 * 109.46876 * 299.99722 * 10 8 3 41 41 H 0.96995 * 120.00002 * 354.72529 * 16 15 13 42 42 H 1.08007 * 119.99790 * 359.97438 * 22 21 11 43 43 H 1.08004 * 120.00499 * 180.23296 * 23 22 21 44 44 H 1.08006 * 119.99774 * 179.83158 * 24 23 22 45 45 H 1.08002 * 119.99968 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.99707 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7104 6 6 3.9624 2.5522 -3.0357 7 8 5.3118 2.3273 -3.4485 8 6 2.2430 2.0166 1.1672 9 8 2.6468 3.1602 1.1672 10 6 1.9923 1.3060 2.4723 11 6 2.3241 2.2432 3.6352 12 1 1.7712 3.1754 3.5197 13 6 3.8029 2.5336 3.6401 14 1 4.4990 1.7974 3.2660 15 6 4.2672 3.7389 4.1223 16 7 3.4362 4.5818 4.6957 17 14 6.0764 4.1749 3.9610 18 1 6.8098 3.6959 5.1601 19 1 6.6355 3.5271 2.7474 20 1 6.2223 5.6484 3.8474 21 6 1.9367 1.5871 4.9354 22 6 2.5757 0.4313 5.3437 23 6 2.2231 -0.1684 6.5382 24 6 1.2258 0.3833 7.3205 25 6 0.5831 1.5361 6.9096 26 6 0.9385 2.1379 5.7170 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5818 1.6878 -2.0284 33 1 2.0956 3.1411 -1.1384 34 1 4.3883 2.2155 -0.9507 35 1 3.8746 0.7623 -1.8407 36 1 3.2816 2.1677 -3.7951 37 1 3.7952 3.6214 -2.9058 38 1 5.5445 2.7562 -4.2833 39 1 2.6229 0.4187 2.5298 40 1 0.9444 1.0114 2.5302 41 1 2.4854 4.3905 4.7114 42 1 3.3523 -0.0017 4.7307 43 1 2.7249 -1.0693 6.8591 44 1 0.9484 -0.0868 8.2525 45 1 -0.1964 1.9669 7.5206 46 1 0.4366 3.0388 5.3962 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356531826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:10 Heat of formation + Delta-G solvation = -98.985211 kcal Electronic energy + Delta-G solvation = -25644.163004 eV Core-core repulsion = 22111.177104 eV Total energy + Delta-G solvation = -3532.985900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.07257 -39.91992 -38.13748 -37.03780 -36.09817 -33.92111 -33.08326 -31.61752 -30.92087 -30.39108 -27.51011 -26.04113 -24.65789 -24.03970 -23.20265 -22.63440 -21.60424 -19.91237 -18.71260 -18.38660 -18.09545 -17.27968 -17.27098 -16.43437 -16.20489 -15.92052 -15.70417 -15.62392 -14.98722 -14.73438 -14.66718 -14.35019 -14.11618 -14.03293 -14.00302 -13.65766 -13.45899 -13.20401 -13.11866 -12.77479 -12.68508 -12.60039 -12.16568 -12.12625 -12.02044 -11.96839 -11.88972 -11.72126 -11.46078 -10.92323 -10.70522 -10.63150 -10.31623 -9.65049 -9.62264 -9.27969 -8.47476 -6.12671 0.66954 0.73306 1.43360 1.55629 1.69077 1.84839 2.10640 2.57225 3.09613 3.34430 3.37696 3.73037 3.99712 4.06382 4.11942 4.20256 4.26523 4.27435 4.30060 4.36856 4.41510 4.45273 4.47035 4.57824 4.59901 4.63018 4.68399 4.78998 4.84216 4.91076 4.95108 5.07257 5.12771 5.17610 5.22019 5.38218 5.39782 5.41308 5.73739 5.75012 5.81674 5.92974 6.22778 6.28997 6.37502 6.51472 6.76628 6.88688 7.45813 7.62284 8.92840 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.004997 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.716719 B = 5602.407459 C = 7275.840880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.100 3.900 3 N -0.620 5.620 4 C 0.123 3.877 5 C -0.132 4.132 6 C 0.083 3.917 7 O -0.598 6.598 8 C 0.510 3.490 9 O -0.561 6.561 10 C -0.105 4.105 11 C 0.074 3.926 12 H 0.006 0.994 13 C -0.555 4.555 14 H 0.035 0.965 15 C -0.024 4.024 16 N -0.941 5.941 17 Si 1.099 2.901 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.289 1.289 21 C -0.053 4.053 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.144 4.144 25 C -0.124 4.124 26 C -0.153 4.153 27 H 0.090 0.910 28 H 0.039 0.961 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.056 0.944 34 H 0.026 0.974 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.044 0.956 38 H 0.399 0.601 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.258 0.742 42 H 0.112 0.888 43 H 0.143 0.857 44 H 0.148 0.852 45 H 0.135 0.865 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 -13.147 -11.284 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.022 4.022 3 N -0.354 5.354 4 C 0.001 3.999 5 C -0.171 4.171 6 C 0.005 3.995 7 O -0.407 6.407 8 C 0.299 3.701 9 O -0.437 6.437 10 C -0.145 4.145 11 C 0.055 3.945 12 H 0.024 0.976 13 C -0.593 4.593 14 H 0.053 0.947 15 C -0.222 4.222 16 N -0.579 5.579 17 Si 0.924 3.076 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.216 1.216 21 C -0.054 4.054 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.162 4.162 25 C -0.142 4.142 26 C -0.172 4.172 27 H 0.109 0.891 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.133 0.867 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.249 0.751 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.130 0.870 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.153 0.847 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.417 -11.740 -10.346 16.559 hybrid contribution -0.945 -0.055 -0.808 1.245 sum -6.362 -11.795 -11.154 17.436 Atomic orbital electron populations 1.22175 0.94817 1.03443 1.01892 1.21804 0.95254 0.80719 1.04439 1.48158 1.66728 1.15589 1.04971 1.21263 0.95373 0.97810 0.85501 1.21823 0.97121 1.01599 0.96518 1.22064 0.83390 0.98676 0.95368 1.86447 1.30119 1.78017 1.46127 1.21048 0.76187 0.86448 0.86408 1.90712 1.45190 1.20242 1.87582 1.21573 1.01877 0.99260 0.91769 1.17699 0.95976 0.92565 0.88279 0.97606 1.21781 0.91623 1.02410 1.43530 0.94673 1.26682 1.08921 0.93632 0.92981 1.70815 1.04486 1.40666 1.41977 0.83163 0.71836 0.75868 0.76726 1.19660 1.20986 1.21555 1.20588 0.92734 0.94026 0.98060 1.20986 0.99446 0.96069 0.97669 1.21405 0.97865 1.00648 0.94198 1.21313 0.97470 0.96619 1.00780 1.21301 1.00659 0.96561 0.95699 1.21117 0.99041 1.00039 0.96974 0.89117 0.94182 0.91860 0.87910 0.90342 0.86678 0.92503 0.95503 0.90513 0.90143 0.93801 0.75140 0.89118 0.89360 0.93157 0.87024 0.83889 0.83460 0.84667 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 10.24 71.99 0.74 -2.14 16 2 C 0.10 2.06 5.93 86.38 0.51 2.57 16 3 N -0.62 -18.88 2.47 -821.79 -2.03 -20.91 16 4 C 0.12 3.27 5.41 86.38 0.47 3.74 16 5 C -0.13 -3.65 5.91 30.59 0.18 -3.47 16 6 C 0.08 1.79 7.05 71.98 0.51 2.30 16 7 O -0.60 -13.99 13.66 -148.98 -2.03 -16.02 16 8 C 0.51 21.60 7.43 87.66 0.65 22.25 16 9 O -0.56 -30.32 14.60 -3.04 -0.04 -30.36 16 10 C -0.10 -4.26 3.49 29.85 0.10 -4.16 16 11 C 0.07 3.77 1.31 -12.29 -0.02 3.75 16 12 H 0.01 0.34 6.23 -2.39 -0.01 0.32 16 13 C -0.56 -32.06 6.40 25.60 0.16 -31.90 16 14 H 0.03 2.03 7.82 -2.91 -0.02 2.01 16 15 C -0.02 -1.45 5.45 84.65 0.46 -0.99 16 16 N -0.94 -61.31 13.63 21.45 0.29 -61.02 16 17 Si 1.10 56.22 29.91 68.60 2.05 58.27 16 18 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 19 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 20 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 21 C -0.05 -2.44 4.77 -19.87 -0.09 -2.54 16 22 C -0.12 -4.98 8.88 22.27 0.20 -4.79 16 23 C -0.12 -4.08 10.05 22.27 0.22 -3.85 16 24 C -0.14 -4.49 10.05 22.27 0.22 -4.26 16 25 C -0.12 -4.36 10.05 22.27 0.22 -4.14 16 26 C -0.15 -6.62 9.67 22.27 0.22 -6.40 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.04 0.87 7.22 -2.39 -0.02 0.85 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.10 1.55 8.07 -2.38 -0.02 1.53 16 31 H 0.08 1.67 6.44 -2.39 -0.02 1.66 16 32 H 0.12 2.00 8.07 -2.39 -0.02 1.98 16 33 H 0.06 1.82 7.42 -2.39 -0.02 1.80 16 34 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.40 4.95 9.12 -74.06 -0.68 4.28 16 39 H 0.09 3.41 7.12 -2.39 -0.02 3.39 16 40 H 0.09 3.11 7.19 -2.39 -0.02 3.09 16 41 H 0.26 16.91 6.68 -92.71 -0.62 16.29 16 42 H 0.11 4.44 7.80 -2.91 -0.02 4.42 16 43 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 44 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 45 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 46 H 0.09 4.22 7.95 -2.91 -0.02 4.20 16 Total: -1.00 -83.29 377.83 3.42 -79.86 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.43 Total: 24.20 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 4.76 Total: -34.02 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -1.74 Total: -81.93 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -2.08 Total: -46.38 kcal Atomic # 14 Polarization: 56.22 SS G_CDS: 2.05 Total: 58.27 kcal Total: -83.29 3.42 -79.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356531826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.123 kcal (2) G-P(sol) polarization free energy of solvation -83.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds