Wall clock time and date at job start Tue Mar 31 2020 09:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47205 * 2 1 4 4 C 1.36879 * 120.00100 * 268.67850 * 3 2 1 5 5 H 1.07990 * 120.00054 * 191.23613 * 4 3 2 6 6 C 1.39055 * 119.99566 * 11.24167 * 4 3 2 7 7 N 1.31355 * 119.99944 * 8.92009 * 6 4 3 8 8 Si 1.86796 * 119.99688 * 188.91937 * 6 4 3 9 9 H 1.48506 * 109.47166 * 60.00075 * 8 6 4 10 10 H 1.48496 * 109.47379 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47285 * 300.00283 * 8 6 4 12 12 C 1.34773 * 120.00183 * 88.68018 * 3 2 1 13 13 O 1.21589 * 120.00209 * 185.06758 * 12 3 2 14 14 C 1.47727 * 119.99955 * 5.06633 * 12 3 2 15 15 C 1.39679 * 120.14879 * 55.06949 * 14 12 3 16 16 C 1.37914 * 119.84139 * 180.28036 * 15 14 12 17 17 C 1.38396 * 120.15633 * 359.69906 * 16 15 14 18 18 C 1.38357 * 120.30208 * 0.02562 * 17 16 15 19 19 C 1.37955 * 120.15309 * 0.02562 * 18 17 16 20 20 C 1.50702 * 120.07763 * 179.97438 * 19 18 17 21 21 O 1.42897 * 109.46919 * 0.02562 * 20 19 18 22 22 C 1.42903 * 113.99862 * 179.97438 * 21 20 19 23 23 C 1.53003 * 109.46919 * 60.00113 * 22 21 20 24 24 C 1.53002 * 109.47140 * 179.97438 * 22 21 20 25 25 C 1.52996 * 109.47300 * 300.00157 * 22 21 20 26 26 H 1.08997 * 109.46832 * 300.00016 * 1 2 3 27 27 H 1.08995 * 109.47108 * 59.99574 * 1 2 3 28 28 H 1.08994 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46967 * 240.00071 * 2 1 3 30 30 H 1.08995 * 109.47108 * 120.00426 * 2 1 3 31 31 H 0.97008 * 119.99581 * 180.02562 * 7 6 4 32 32 H 1.07991 * 120.07706 * 359.97438 * 15 14 12 33 33 H 1.08004 * 119.92188 * 179.72759 * 16 15 14 34 34 H 1.08000 * 119.85016 * 180.02562 * 17 16 15 35 35 H 1.08001 * 119.92226 * 179.97438 * 18 17 16 36 36 H 1.08999 * 109.47394 * 240.00257 * 20 19 18 37 37 H 1.09007 * 109.47003 * 119.99818 * 20 19 18 38 38 H 1.09000 * 109.47481 * 60.00142 * 23 22 21 39 39 H 1.09002 * 109.46867 * 180.02562 * 23 22 21 40 40 H 1.08995 * 109.47296 * 299.99577 * 23 22 21 41 41 H 1.08998 * 109.46936 * 60.00339 * 24 22 21 42 42 H 1.09002 * 109.47143 * 179.97438 * 24 22 21 43 43 H 1.08997 * 109.47541 * 300.00488 * 24 22 21 44 44 H 1.08994 * 109.47529 * 59.99656 * 25 22 21 45 45 H 1.09002 * 109.47349 * 180.02562 * 25 22 21 46 46 H 1.08998 * 109.46967 * 299.99778 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2723 2.0173 -1.1851 5 1 2.7991 2.9600 -1.1898 6 6 1.8518 1.4497 -2.3828 7 7 1.0628 0.3996 -2.3707 8 14 2.4090 2.1806 -4.0091 9 1 3.8911 2.1341 -4.0908 10 1 1.8273 1.3978 -5.1288 11 1 1.9523 3.5907 -4.1004 12 6 2.2177 2.0255 1.1668 13 8 2.5341 3.1995 1.1668 14 6 2.0517 1.3054 2.4460 15 6 2.7658 0.1293 2.6868 16 6 2.6016 -0.5410 3.8808 17 6 1.7365 -0.0476 4.8418 18 6 1.0303 1.1198 4.6121 19 6 1.1841 1.7999 3.4218 20 6 0.4137 3.0710 3.1732 21 8 -0.4018 3.3637 4.3095 22 6 -1.1776 4.5564 4.1765 23 6 -2.1119 4.4254 2.9720 24 6 -2.0074 4.7691 5.4442 25 6 -0.2446 5.7513 3.9706 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.7698 0.0034 -3.2063 32 1 3.4411 -0.2568 1.9377 33 1 3.1498 -1.4528 4.0666 34 1 1.6120 -0.5763 5.7753 35 1 0.3565 1.4991 5.3662 36 1 -0.2186 2.9467 2.2941 37 1 1.1112 3.8919 3.0059 38 1 -2.7766 3.5741 3.1186 39 1 -2.7033 5.3354 2.8702 40 1 -1.5211 4.2737 2.0687 41 1 -1.3422 4.8622 6.3026 42 1 -2.5988 5.6791 5.3429 43 1 -2.6722 3.9177 5.5905 44 1 0.3463 5.5996 3.0674 45 1 -0.8363 6.6612 3.8696 46 1 0.4210 5.8447 4.8288 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358572142.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:31 Heat of formation + Delta-G solvation = -59.115285 kcal Electronic energy + Delta-G solvation = -26437.706625 eV Core-core repulsion = 22906.449614 eV Total energy + Delta-G solvation = -3531.257011 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 4.55 seconds Orbital eigenvalues (eV) -41.32681 -40.01816 -38.99791 -37.10155 -34.81768 -33.84635 -32.39057 -31.85523 -31.24782 -28.66777 -28.39334 -27.38682 -26.55042 -24.65651 -23.57203 -22.65423 -20.92161 -20.72579 -18.95861 -18.20229 -17.60281 -17.34918 -16.68338 -16.54397 -16.17452 -15.96139 -15.54996 -15.22043 -15.10791 -14.95029 -14.59145 -14.40138 -14.32604 -13.80304 -13.62806 -13.58643 -13.11851 -13.05711 -12.92970 -12.84898 -12.82562 -12.69021 -12.67367 -12.39821 -12.30077 -12.15951 -12.06721 -11.94493 -11.72647 -11.48190 -10.87619 -10.70810 -10.39609 -9.87247 -9.57285 -9.55778 -8.25323 -5.92778 0.19423 0.45422 1.37808 1.40594 1.50428 1.99260 2.24689 2.54196 2.79372 3.03624 3.15767 3.76833 3.86436 3.89947 3.97793 4.05655 4.09846 4.21609 4.29294 4.42425 4.50341 4.55954 4.57923 4.60378 4.68258 4.76019 4.84377 4.86238 4.89964 4.91574 4.92927 4.96527 5.07740 5.10502 5.16991 5.27818 5.35496 5.36468 5.48215 5.52669 5.56770 5.62922 5.86968 6.03024 6.09244 6.24088 6.51712 7.12445 7.43130 7.99076 8.62992 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013284 B = 0.005163 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.255843 B = 5421.726040 C = 6640.078332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.115 3.885 3 N -0.436 5.436 4 C -0.340 4.340 5 H 0.073 0.927 6 C 0.000 4.000 7 N -0.873 5.873 8 Si 0.992 3.008 9 H -0.271 1.271 10 H -0.265 1.265 11 H -0.280 1.280 12 C 0.462 3.538 13 O -0.637 6.637 14 C -0.111 4.111 15 C -0.108 4.108 16 C -0.114 4.114 17 C -0.105 4.105 18 C -0.104 4.104 19 C -0.075 4.075 20 C 0.118 3.882 21 O -0.378 6.378 22 C 0.097 3.903 23 C -0.178 4.178 24 C -0.127 4.127 25 C -0.178 4.178 26 H 0.010 0.990 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.274 0.726 32 H 0.124 0.876 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.145 0.855 36 H 0.036 0.964 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.031 0.969 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.033 0.967 45 H 0.089 0.911 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.307 -1.453 13.252 14.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.007 4.007 3 N -0.152 5.152 4 C -0.468 4.468 5 H 0.091 0.909 6 C -0.202 4.202 7 N -0.512 5.512 8 Si 0.815 3.185 9 H -0.196 1.196 10 H -0.190 1.190 11 H -0.206 1.206 12 C 0.252 3.748 13 O -0.527 6.527 14 C -0.115 4.115 15 C -0.127 4.127 16 C -0.132 4.132 17 C -0.123 4.123 18 C -0.122 4.122 19 C -0.076 4.076 20 C 0.042 3.958 21 O -0.298 6.298 22 C 0.058 3.942 23 C -0.235 4.235 24 C -0.184 4.184 25 C -0.235 4.235 26 H 0.029 0.971 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.179 0.821 34 H 0.182 0.818 35 H 0.162 0.838 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.050 0.950 41 H 0.085 0.915 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.052 0.948 45 H 0.107 0.893 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.278 -1.173 13.199 14.263 hybrid contribution 0.382 0.790 -1.693 1.907 sum -4.896 -0.383 11.506 12.510 Atomic orbital electron populations 1.21937 0.96214 1.00678 0.99610 1.21848 0.95096 0.82066 1.01663 1.43964 1.54259 1.12715 1.04252 1.19692 1.36112 1.06989 0.83981 0.90865 1.25999 0.95274 0.97001 1.01946 1.70176 1.30901 1.21825 1.28299 0.85024 0.78648 0.77947 0.76838 1.19626 1.18967 1.20554 1.18608 0.85007 0.86579 0.84584 1.90532 1.56373 1.17990 1.87817 1.19764 1.00196 0.97282 0.94208 1.21318 0.99047 0.93402 0.98889 1.21434 0.98942 1.00627 0.92175 1.21653 0.95129 0.95213 1.00292 1.21096 1.00000 0.95429 0.95663 1.19736 0.96755 0.96120 0.95006 1.20826 0.92055 0.94778 0.88155 1.87808 1.58893 1.44157 1.38909 1.21803 0.90831 0.84146 0.97428 1.22431 0.99932 1.03731 0.97407 1.21733 0.99103 1.03211 0.94367 1.22425 1.00347 0.99130 1.01592 0.97052 0.91803 0.91960 0.88511 0.91800 0.91549 0.85846 0.82063 0.81821 0.83756 0.94562 0.92969 0.91591 0.89231 0.94970 0.91461 0.88925 0.91519 0.94787 0.89262 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 9.60 71.98 0.69 -4.96 16 2 C 0.12 5.38 5.13 86.38 0.44 5.83 16 3 N -0.44 -23.50 2.62 -638.94 -1.67 -25.18 16 4 C -0.34 -19.57 9.48 84.10 0.80 -18.77 16 5 H 0.07 4.54 7.26 -2.92 -0.02 4.51 16 6 C 0.00 -0.01 5.25 84.96 0.45 0.43 16 7 N -0.87 -44.00 7.61 21.68 0.17 -43.83 16 8 Si 0.99 42.13 29.56 68.60 2.03 44.16 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 12 C 0.46 24.74 6.49 86.75 0.56 25.30 16 13 O -0.64 -38.71 15.38 -3.99 -0.06 -38.77 16 14 C -0.11 -4.84 4.95 -20.09 -0.10 -4.94 16 15 C -0.11 -3.83 7.55 22.54 0.17 -3.66 16 16 C -0.11 -3.00 10.03 22.23 0.22 -2.78 16 17 C -0.11 -2.60 10.04 22.34 0.22 -2.37 16 18 C -0.10 -3.22 9.37 22.23 0.21 -3.01 16 19 C -0.08 -2.97 5.91 -19.60 -0.12 -3.08 16 20 C 0.12 4.79 4.37 71.24 0.31 5.10 16 21 O -0.38 -12.52 8.47 -148.98 -1.26 -13.78 16 22 C 0.10 2.60 1.14 -10.79 -0.01 2.59 16 23 C -0.18 -4.83 8.25 71.98 0.59 -4.24 16 24 C -0.13 -2.43 8.84 71.98 0.64 -1.80 16 25 C -0.18 -4.80 8.25 71.98 0.59 -4.20 16 26 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 3.21 6.14 -2.39 -0.01 3.19 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.10 4.77 5.83 -2.38 -0.01 4.76 16 30 H 0.06 2.64 4.43 -2.39 -0.01 2.63 16 31 H 0.27 12.91 8.31 -92.70 -0.77 12.14 16 32 H 0.12 4.33 7.42 -2.92 -0.02 4.31 16 33 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 35 H 0.14 4.00 7.00 -2.91 -0.02 3.98 16 36 H 0.04 1.64 6.42 -2.39 -0.02 1.62 16 37 H 0.05 2.39 5.53 -2.38 -0.01 2.38 16 38 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.03 1.07 6.54 -2.39 -0.02 1.05 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.03 1.13 6.54 -2.39 -0.02 1.12 16 45 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -68.69 360.46 5.84 -62.85 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.97 Total: 29.09 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 5.68 Total: -14.55 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -1.51 Total: -69.01 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -1.32 Total: -52.55 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -68.69 5.84 -62.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358572142.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.738 kcal (2) G-P(sol) polarization free energy of solvation -68.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.55 seconds