Wall clock time and date at job start Tue Mar 31 2020 09:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47027 * 2 1 4 4 C 1.34770 * 120.00168 * 275.42947 * 3 2 1 5 5 O 1.21288 * 120.00007 * 180.02562 * 4 3 2 6 6 C 1.50699 * 120.00215 * 0.02562 * 4 3 2 7 7 C 1.52999 * 109.47137 * 179.97438 * 6 4 3 8 8 H 1.09006 * 109.47514 * 304.99902 * 7 6 4 9 9 C 1.50702 * 109.47263 * 64.99884 * 7 6 4 10 10 H 1.07995 * 119.99981 * 25.08137 * 9 7 6 11 11 C 1.37879 * 120.00166 * 205.07092 * 9 7 6 12 12 N 1.31517 * 119.99543 * 5.04439 * 11 9 7 13 13 Si 1.86800 * 120.00082 * 185.03516 * 11 9 7 14 14 H 1.48503 * 109.46659 * 60.00615 * 13 11 9 15 15 H 1.48499 * 109.46830 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47040 * 300.00644 * 13 11 9 17 17 C 1.50701 * 109.46946 * 185.00137 * 7 6 4 18 18 C 1.38238 * 120.00125 * 304.58385 * 17 7 6 19 19 C 1.38230 * 120.00008 * 179.79037 * 18 17 7 20 20 C 1.38237 * 120.00074 * 0.44438 * 19 18 17 21 21 C 1.38231 * 120.00115 * 359.81108 * 20 19 18 22 22 C 1.38234 * 119.99860 * 124.86589 * 17 7 6 23 23 C 1.46501 * 119.99425 * 95.43596 * 3 2 1 24 24 H 1.09001 * 109.46772 * 186.31759 * 23 3 2 25 25 C 1.52998 * 109.47121 * 306.31391 * 23 3 2 26 26 C 1.52994 * 109.47345 * 66.31730 * 23 3 2 27 27 O 1.42900 * 109.47289 * 294.02749 * 26 23 3 28 28 H 1.09004 * 109.46511 * 299.99658 * 1 2 3 29 29 H 1.09004 * 109.47205 * 59.99540 * 1 2 3 30 30 H 1.09001 * 109.47225 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46511 * 240.00342 * 2 1 3 32 32 H 1.08990 * 109.47181 * 120.00751 * 2 1 3 33 33 H 1.09003 * 109.47080 * 299.99799 * 6 4 3 34 34 H 1.09003 * 109.46929 * 60.00157 * 6 4 3 35 35 H 0.97006 * 119.99447 * 179.97438 * 12 11 9 36 36 H 1.07997 * 119.99692 * 0.02562 * 18 17 7 37 37 H 1.07998 * 119.99836 * 180.28043 * 19 18 17 38 38 H 1.08003 * 120.00265 * 179.83994 * 20 19 18 39 39 H 1.07996 * 120.00136 * 179.97438 * 21 20 19 40 40 H 1.08005 * 120.00434 * 359.97438 * 22 17 7 41 41 H 1.09001 * 109.46997 * 60.00506 * 25 23 3 42 42 H 1.08998 * 109.46881 * 180.02562 * 25 23 3 43 43 H 1.09002 * 109.47133 * 300.00407 * 25 23 3 44 44 H 1.09005 * 109.47320 * 174.02906 * 26 23 3 45 45 H 1.09004 * 109.47124 * 54.02872 * 26 23 3 46 46 H 0.96695 * 114.00164 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1388 2.0534 -1.1619 5 8 2.5436 3.1967 -1.1619 6 6 1.7707 1.3844 -2.4611 7 6 1.9979 2.3587 -3.6187 8 1 1.4455 3.2797 -3.4323 9 6 3.4682 2.6693 -3.7327 10 1 4.1991 1.9645 -3.3649 11 6 3.8802 3.8532 -4.3069 12 7 2.9919 4.7546 -4.6647 13 14 5.7001 4.1768 -4.5764 14 1 6.2620 3.1309 -5.4684 15 1 5.8780 5.5109 -5.2039 16 1 6.4070 4.1460 -3.2709 17 6 1.5152 1.7345 -4.9026 18 6 2.0046 0.5042 -5.2998 19 6 1.5586 -0.0703 -6.4754 20 6 0.6301 0.5897 -7.2584 21 6 0.1446 1.8224 -6.8639 22 6 0.5875 2.3950 -5.6861 23 6 2.3758 2.0316 1.2631 24 1 2.6075 3.0806 1.0787 25 6 1.2008 1.9327 2.2381 26 6 3.5986 1.3375 1.8660 27 8 3.2536 0.0011 2.2362 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8898 33 1 2.3917 0.4998 -2.6030 34 1 0.7212 1.0912 -2.4342 35 1 3.2819 5.5877 -5.0683 36 1 2.7326 -0.0098 -4.6898 37 1 1.9376 -1.0335 -6.7833 38 1 0.2835 0.1421 -8.1782 39 1 -0.5805 2.3382 -7.4759 40 1 0.2081 3.3582 -5.3779 41 1 0.9691 0.8837 2.4225 42 1 1.4666 2.4171 3.1776 43 1 0.3296 2.4273 1.8085 44 1 3.9289 1.8852 2.7488 45 1 4.4029 1.3147 1.1306 46 1 3.9828 -0.4995 2.6268 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358822541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:31 Heat of formation + Delta-G solvation = -65.378779 kcal Electronic energy + Delta-G solvation = -26153.058224 eV Core-core repulsion = 22621.529607 eV Total energy + Delta-G solvation = -3531.528616 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.64873 -38.30277 -37.13678 -35.21052 -33.99067 -32.21409 -31.25110 -29.95362 -29.59369 -28.52642 -26.25330 -25.50548 -23.09124 -22.81881 -21.63944 -20.98523 -19.50417 -18.31787 -17.58072 -16.56978 -16.30627 -15.89254 -15.54271 -14.87668 -14.54425 -14.19173 -14.04802 -13.87041 -13.75632 -13.42365 -13.03279 -12.78022 -12.57915 -12.49337 -12.23572 -12.14799 -11.97087 -11.79316 -11.55634 -11.45272 -11.21282 -10.87138 -10.83854 -10.78097 -10.54916 -10.41110 -10.20696 -10.02814 -9.94792 -9.36416 -9.08503 -8.71528 -8.29473 -8.10283 -7.98991 -7.55741 -5.89212 -3.87923 2.34252 2.40473 3.40375 3.43527 3.46091 3.51419 3.56345 4.25177 4.54207 4.80724 4.96196 5.15307 5.28023 5.31059 5.41717 5.48025 5.56134 5.62925 5.69700 5.70845 5.77245 5.79665 5.85329 5.89581 6.03260 6.08962 6.16473 6.19567 6.29818 6.33853 6.39642 6.45903 6.47589 6.62096 6.84045 6.97357 7.07441 7.14568 7.36422 7.49210 7.54080 7.61502 7.92598 8.00037 8.06276 8.13569 8.42285 9.09572 9.13571 9.71923 11.20570 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.005307 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.517507 B = 5274.356730 C = 6682.443668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.103 3.897 3 N -0.619 5.619 4 C 0.514 3.486 5 O -0.500 6.500 6 C -0.119 4.119 7 C 0.080 3.920 8 H 0.068 0.932 9 C -0.486 4.486 10 H 0.049 0.951 11 C 0.074 3.926 12 N -0.881 5.881 13 Si 0.885 3.115 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.279 1.279 17 C -0.020 4.020 18 C -0.120 4.120 19 C -0.132 4.132 20 C -0.156 4.156 21 C -0.129 4.129 22 C -0.112 4.112 23 C 0.139 3.861 24 H 0.108 0.892 25 C -0.154 4.154 26 C 0.067 3.933 27 O -0.566 6.566 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.259 0.741 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.919 -10.611 9.973 15.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.020 4.020 3 N -0.356 5.356 4 C 0.303 3.697 5 O -0.372 6.372 6 C -0.159 4.159 7 C 0.061 3.939 8 H 0.086 0.914 9 C -0.524 4.524 10 H 0.067 0.933 11 C -0.129 4.129 12 N -0.518 5.518 13 Si 0.713 3.287 14 H -0.205 1.205 15 H -0.214 1.214 16 H -0.204 1.204 17 C -0.021 4.021 18 C -0.138 4.138 19 C -0.150 4.150 20 C -0.175 4.175 21 C -0.147 4.147 22 C -0.130 4.130 23 C 0.035 3.965 24 H 0.126 0.874 25 C -0.212 4.212 26 C -0.012 4.012 27 O -0.372 6.372 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.134 0.866 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.282 -9.564 9.624 14.228 hybrid contribution 1.716 0.055 -0.143 1.723 sum -2.566 -9.509 9.481 13.671 Atomic orbital electron populations 1.22359 0.96984 1.01532 1.02444 1.21613 0.93530 0.83108 1.03740 1.48161 1.67595 1.14229 1.05648 1.20982 0.77153 0.86751 0.84853 1.90737 1.42888 1.17499 1.86086 1.21813 1.00138 1.00375 0.93562 1.17817 0.97919 0.93407 0.84710 0.91429 1.20638 0.89796 1.03059 1.38903 0.93289 1.24818 0.96838 0.95789 0.95416 1.69903 1.33074 1.07406 1.41458 0.86779 0.86464 0.77240 0.78207 1.20477 1.21411 1.20444 1.20718 0.90638 0.91893 0.98862 1.20919 0.99875 0.96431 0.96578 1.20940 0.98718 0.99478 0.95896 1.20781 1.00359 0.96479 0.99844 1.20996 1.00672 0.95835 0.97205 1.21092 0.97705 0.99446 0.94765 1.20990 0.93234 0.98129 0.84158 0.87395 1.22077 0.98093 1.02675 0.98306 1.22661 0.97625 0.82941 0.97951 1.86439 1.41039 1.25810 1.83899 0.92412 0.92428 0.92301 0.91351 0.88221 0.90654 0.91567 0.93154 0.87136 0.87751 0.87880 0.87702 0.86610 0.91389 0.92424 0.92531 0.93226 0.93109 0.78134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 9.93 37.16 0.37 -1.71 16 2 C 0.10 1.35 4.99 -4.04 -0.02 1.33 16 3 N -0.62 -9.94 2.38 -166.11 -0.40 -10.33 16 4 C 0.51 10.58 7.39 -10.99 -0.08 10.50 16 5 O -0.50 -12.64 14.32 5.55 0.08 -12.56 16 6 C -0.12 -2.38 3.44 -27.88 -0.10 -2.48 16 7 C 0.08 1.96 1.61 -92.92 -0.15 1.81 16 8 H 0.07 1.89 7.09 -51.93 -0.37 1.52 16 9 C -0.49 -13.28 6.62 -34.44 -0.23 -13.51 16 10 H 0.05 1.34 7.81 -52.49 -0.41 0.93 16 11 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 12 N -0.88 -26.02 12.92 55.43 0.72 -25.30 16 13 Si 0.88 22.36 29.54 -169.99 -5.02 17.34 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 16 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 17 C -0.02 -0.46 4.77 -104.62 -0.50 -0.96 16 18 C -0.12 -2.45 8.94 -39.58 -0.35 -2.81 16 19 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 20 C -0.16 -2.79 10.05 -39.58 -0.40 -3.19 16 21 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 22 C -0.11 -2.45 9.67 -39.58 -0.38 -2.83 16 23 C 0.14 1.99 3.15 -67.93 -0.21 1.78 16 24 H 0.11 1.79 6.93 -51.93 -0.36 1.43 16 25 C -0.15 -1.83 7.81 37.16 0.29 -1.53 16 26 C 0.07 0.79 6.84 37.15 0.25 1.04 16 27 O -0.57 -5.70 9.93 -35.23 -0.35 -6.05 16 28 H 0.06 0.67 6.04 -51.93 -0.31 0.36 16 29 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.90 6.67 -51.93 -0.35 0.55 16 32 H 0.10 1.22 4.98 -51.93 -0.26 0.96 16 33 H 0.08 1.42 6.61 -51.93 -0.34 1.07 16 34 H 0.07 1.19 6.52 -51.93 -0.34 0.85 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.11 2.15 7.38 -52.49 -0.39 1.76 16 37 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 39 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.12 2.62 7.95 -52.48 -0.42 2.20 16 41 H 0.07 0.78 6.01 -51.93 -0.31 0.47 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.71 7.91 -51.93 -0.41 0.30 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.37 2.20 9.12 45.56 0.42 2.61 16 LS Contribution 363.80 15.07 5.48 5.48 Total: -1.00 -32.70 363.80 -8.18 -40.88 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.29 Total: 6.74 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -2.40 Total: -16.20 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.32 Total: -35.63 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.27 Total: -18.61 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.70 -8.18 -40.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358822541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.499 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds