Wall clock time and date at job start Tue Mar 31 2020 09:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47027 * 2 1 4 4 C 1.34770 * 120.00168 * 275.42947 * 3 2 1 5 5 O 1.21288 * 120.00007 * 180.02562 * 4 3 2 6 6 C 1.50699 * 120.00215 * 0.02562 * 4 3 2 7 7 C 1.52999 * 109.47137 * 179.97438 * 6 4 3 8 8 H 1.09006 * 109.47514 * 304.99902 * 7 6 4 9 9 C 1.50702 * 109.47263 * 64.99884 * 7 6 4 10 10 H 1.07995 * 119.99981 * 25.08137 * 9 7 6 11 11 C 1.37879 * 120.00166 * 205.07092 * 9 7 6 12 12 N 1.31517 * 119.99543 * 5.04439 * 11 9 7 13 13 Si 1.86800 * 120.00082 * 185.03516 * 11 9 7 14 14 H 1.48503 * 109.46659 * 60.00615 * 13 11 9 15 15 H 1.48499 * 109.46830 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47040 * 300.00644 * 13 11 9 17 17 C 1.50701 * 109.46946 * 185.00137 * 7 6 4 18 18 C 1.38238 * 120.00125 * 304.58385 * 17 7 6 19 19 C 1.38230 * 120.00008 * 179.79037 * 18 17 7 20 20 C 1.38237 * 120.00074 * 0.44438 * 19 18 17 21 21 C 1.38231 * 120.00115 * 359.81108 * 20 19 18 22 22 C 1.38234 * 119.99860 * 124.86589 * 17 7 6 23 23 C 1.46501 * 119.99425 * 95.43596 * 3 2 1 24 24 H 1.09001 * 109.46772 * 186.31759 * 23 3 2 25 25 C 1.52998 * 109.47121 * 306.31391 * 23 3 2 26 26 C 1.52994 * 109.47345 * 66.31730 * 23 3 2 27 27 O 1.42900 * 109.47289 * 294.02749 * 26 23 3 28 28 H 1.09004 * 109.46511 * 299.99658 * 1 2 3 29 29 H 1.09004 * 109.47205 * 59.99540 * 1 2 3 30 30 H 1.09001 * 109.47225 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46511 * 240.00342 * 2 1 3 32 32 H 1.08990 * 109.47181 * 120.00751 * 2 1 3 33 33 H 1.09003 * 109.47080 * 299.99799 * 6 4 3 34 34 H 1.09003 * 109.46929 * 60.00157 * 6 4 3 35 35 H 0.97006 * 119.99447 * 179.97438 * 12 11 9 36 36 H 1.07997 * 119.99692 * 0.02562 * 18 17 7 37 37 H 1.07998 * 119.99836 * 180.28043 * 19 18 17 38 38 H 1.08003 * 120.00265 * 179.83994 * 20 19 18 39 39 H 1.07996 * 120.00136 * 179.97438 * 21 20 19 40 40 H 1.08005 * 120.00434 * 359.97438 * 22 17 7 41 41 H 1.09001 * 109.46997 * 60.00506 * 25 23 3 42 42 H 1.08998 * 109.46881 * 180.02562 * 25 23 3 43 43 H 1.09002 * 109.47133 * 300.00407 * 25 23 3 44 44 H 1.09005 * 109.47320 * 174.02906 * 26 23 3 45 45 H 1.09004 * 109.47124 * 54.02872 * 26 23 3 46 46 H 0.96695 * 114.00164 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1388 2.0534 -1.1619 5 8 2.5436 3.1967 -1.1619 6 6 1.7707 1.3844 -2.4611 7 6 1.9979 2.3587 -3.6187 8 1 1.4455 3.2797 -3.4323 9 6 3.4682 2.6693 -3.7327 10 1 4.1991 1.9645 -3.3649 11 6 3.8802 3.8532 -4.3069 12 7 2.9919 4.7546 -4.6647 13 14 5.7001 4.1768 -4.5764 14 1 6.2620 3.1309 -5.4684 15 1 5.8780 5.5109 -5.2039 16 1 6.4070 4.1460 -3.2709 17 6 1.5152 1.7345 -4.9026 18 6 2.0046 0.5042 -5.2998 19 6 1.5586 -0.0703 -6.4754 20 6 0.6301 0.5897 -7.2584 21 6 0.1446 1.8224 -6.8639 22 6 0.5875 2.3950 -5.6861 23 6 2.3758 2.0316 1.2631 24 1 2.6075 3.0806 1.0787 25 6 1.2008 1.9327 2.2381 26 6 3.5986 1.3375 1.8660 27 8 3.2536 0.0011 2.2362 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8898 33 1 2.3917 0.4998 -2.6030 34 1 0.7212 1.0912 -2.4342 35 1 3.2819 5.5877 -5.0683 36 1 2.7326 -0.0098 -4.6898 37 1 1.9376 -1.0335 -6.7833 38 1 0.2835 0.1421 -8.1782 39 1 -0.5805 2.3382 -7.4759 40 1 0.2081 3.3582 -5.3779 41 1 0.9691 0.8837 2.4225 42 1 1.4666 2.4171 3.1776 43 1 0.3296 2.4273 1.8085 44 1 3.9289 1.8852 2.7488 45 1 4.4029 1.3147 1.1306 46 1 3.9828 -0.4995 2.6268 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358822541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:30 Heat of formation + Delta-G solvation = -86.140414 kcal Electronic energy + Delta-G solvation = -26153.958516 eV Core-core repulsion = 22621.529607 eV Total energy + Delta-G solvation = -3532.428908 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.10251 -39.83613 -38.34071 -36.40931 -35.80993 -33.66071 -32.89647 -31.49502 -30.85250 -30.04728 -27.52492 -27.14835 -24.70003 -24.08882 -23.16745 -22.32793 -21.09615 -19.67718 -18.70147 -18.44919 -17.79654 -17.21897 -16.94917 -16.48754 -16.16696 -15.72260 -15.51670 -15.15478 -15.07977 -14.71829 -14.39539 -14.31342 -13.97156 -13.80216 -13.58347 -13.50147 -13.43318 -13.21826 -13.06060 -12.83008 -12.69559 -12.55241 -12.51202 -12.25707 -11.94970 -11.87003 -11.67627 -11.57199 -11.25574 -10.99693 -10.90606 -10.51138 -10.28620 -9.53451 -9.44901 -9.18989 -8.03145 -6.06295 0.78575 0.85239 1.35080 1.38076 1.42980 1.95896 2.21220 2.45454 3.18845 3.35150 3.39360 3.80543 4.08166 4.15338 4.22972 4.27232 4.35342 4.39348 4.43736 4.47267 4.56687 4.58177 4.61682 4.63983 4.72220 4.83271 4.86436 4.91607 4.98409 5.02811 5.11945 5.12524 5.20509 5.37997 5.40026 5.50257 5.51638 5.65661 5.78687 5.84116 5.89277 5.97062 6.20358 6.40494 6.46501 6.65290 6.93762 6.99346 7.53901 7.57932 9.05617 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.005307 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.517507 B = 5274.356730 C = 6682.443668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.099 3.901 3 N -0.609 5.609 4 C 0.508 3.492 5 O -0.562 6.562 6 C -0.109 4.109 7 C 0.085 3.915 8 H 0.016 0.984 9 C -0.482 4.482 10 H 0.043 0.957 11 C 0.018 3.982 12 N -0.915 5.915 13 Si 0.936 3.064 14 H -0.267 1.267 15 H -0.288 1.288 16 H -0.281 1.281 17 C -0.045 4.045 18 C -0.130 4.130 19 C -0.125 4.125 20 C -0.147 4.147 21 C -0.130 4.130 22 C -0.138 4.138 23 C 0.126 3.874 24 H 0.076 0.924 25 C -0.142 4.142 26 C 0.080 3.920 27 O -0.569 6.569 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.253 0.747 36 H 0.117 0.883 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.129 0.871 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.030 0.970 46 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.940 -14.153 10.020 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.343 5.343 4 C 0.298 3.702 5 O -0.439 6.439 6 C -0.149 4.149 7 C 0.066 3.934 8 H 0.034 0.966 9 C -0.520 4.520 10 H 0.061 0.939 11 C -0.180 4.180 12 N -0.555 5.555 13 Si 0.763 3.237 14 H -0.192 1.192 15 H -0.213 1.213 16 H -0.207 1.207 17 C -0.046 4.046 18 C -0.148 4.148 19 C -0.143 4.143 20 C -0.165 4.165 21 C -0.148 4.148 22 C -0.156 4.156 23 C 0.023 3.977 24 H 0.094 0.906 25 C -0.199 4.199 26 C 0.001 3.999 27 O -0.378 6.378 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.135 0.865 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.135 0.865 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.147 0.853 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.092 0.908 45 H 0.048 0.952 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -4.302 -13.183 9.714 16.931 hybrid contribution 1.642 1.031 -0.097 1.941 sum -2.660 -12.152 9.618 15.724 Atomic orbital electron populations 1.22313 0.95735 1.03083 1.01702 1.21870 0.94514 0.81150 1.04709 1.48171 1.66019 1.15118 1.05034 1.21111 0.76669 0.86160 0.86290 1.90710 1.46103 1.20003 1.87091 1.21663 1.01556 0.99579 0.92077 1.17577 0.95617 0.92668 0.87556 0.96556 1.20904 0.91341 1.02548 1.37232 0.93879 1.25530 1.00309 0.96098 0.96087 1.70061 1.34476 1.07695 1.43244 0.85954 0.82424 0.77312 0.78001 1.19200 1.21334 1.20655 1.20533 0.92344 0.93501 0.98191 1.21035 1.00178 0.95650 0.97945 1.21361 0.97781 1.00654 0.94465 1.21257 0.99047 0.95411 1.00796 1.21278 1.00796 0.96623 0.96084 1.21049 0.99051 0.98954 0.96590 1.21189 0.95709 0.96861 0.83964 0.90587 1.21981 0.96350 1.03417 0.98193 1.22359 0.95234 0.84103 0.98222 1.86345 1.42377 1.24942 1.84090 0.92136 0.94214 0.89563 0.91155 0.86464 0.89069 0.89709 0.93767 0.86517 0.83923 0.83803 0.85273 0.89314 0.90274 0.90395 0.93769 0.90760 0.95155 0.75555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 9.93 71.98 0.71 -3.00 16 2 C 0.10 2.43 4.99 86.38 0.43 2.86 16 3 N -0.61 -19.67 2.38 -797.85 -1.90 -21.57 16 4 C 0.51 21.92 7.39 87.66 0.65 22.57 16 5 O -0.56 -30.50 14.32 -3.05 -0.04 -30.54 16 6 C -0.11 -4.50 3.44 29.85 0.10 -4.40 16 7 C 0.08 4.36 1.61 -12.29 -0.02 4.34 16 8 H 0.02 0.99 7.09 -2.38 -0.02 0.97 16 9 C -0.48 -27.43 6.62 25.60 0.17 -27.26 16 10 H 0.04 2.43 7.81 -2.91 -0.02 2.41 16 11 C 0.02 1.08 5.45 84.65 0.46 1.55 16 12 N -0.92 -57.22 12.92 21.45 0.28 -56.95 16 13 Si 0.94 47.28 29.54 68.60 2.03 49.30 16 14 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 16 H -0.28 -14.10 7.11 99.48 0.71 -13.40 16 17 C -0.05 -2.09 4.77 -19.87 -0.09 -2.18 16 18 C -0.13 -5.15 8.94 22.27 0.20 -4.95 16 19 C -0.12 -4.11 10.05 22.27 0.22 -3.88 16 20 C -0.15 -4.70 10.05 22.27 0.22 -4.48 16 21 C -0.13 -4.77 10.05 22.27 0.22 -4.55 16 22 C -0.14 -6.25 9.67 22.27 0.22 -6.03 16 23 C 0.13 3.62 3.15 44.99 0.14 3.77 16 24 H 0.08 2.68 6.93 -2.39 -0.02 2.67 16 25 C -0.14 -3.18 7.81 71.98 0.56 -2.62 16 26 C 0.08 1.77 6.84 71.98 0.49 2.26 16 27 O -0.57 -9.76 9.93 -148.98 -1.48 -11.24 16 28 H 0.06 1.29 6.04 -2.38 -0.01 1.28 16 29 H 0.04 1.01 6.57 -2.39 -0.02 0.99 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.71 6.67 -2.38 -0.02 1.70 16 32 H 0.12 2.52 4.98 -2.39 -0.01 2.50 16 33 H 0.09 3.43 6.61 -2.39 -0.02 3.41 16 34 H 0.08 3.13 6.52 -2.39 -0.02 3.11 16 35 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 36 H 0.12 4.37 7.38 -2.91 -0.02 4.35 16 37 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 38 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 39 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 40 H 0.09 4.37 7.95 -2.91 -0.02 4.35 16 41 H 0.08 1.61 6.01 -2.39 -0.01 1.60 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 43 H 0.04 1.09 7.91 -2.39 -0.02 1.07 16 44 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 45 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.39 3.31 9.12 -74.06 -0.68 2.63 16 Total: -1.00 -76.49 363.80 3.88 -72.61 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.30 Total: 24.40 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 4.69 Total: -26.01 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -1.63 Total: -78.52 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -1.52 Total: -41.78 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.30 kcal Total: -76.49 3.88 -72.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358822541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.529 kcal (2) G-P(sol) polarization free energy of solvation -76.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds