Wall clock time and date at job start Tue Mar 31 2020 09:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47324 * 2 1 4 4 C 1.34774 * 119.99969 * 276.08916 * 3 2 1 5 5 O 1.21287 * 119.99914 * 180.02562 * 4 3 2 6 6 C 1.50694 * 120.00288 * 359.97438 * 4 3 2 7 7 C 1.53002 * 109.47349 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47076 * 55.00495 * 7 6 4 9 9 C 1.50701 * 109.46936 * 295.00218 * 7 6 4 10 10 H 1.07998 * 120.00080 * 334.77617 * 9 7 6 11 11 C 1.37879 * 119.99312 * 154.77746 * 9 7 6 12 12 N 1.31509 * 120.00282 * 5.03562 * 11 9 7 13 13 Si 1.86800 * 119.99454 * 185.02946 * 11 9 7 14 14 H 1.48500 * 109.47455 * 60.00425 * 13 11 9 15 15 H 1.48502 * 109.47179 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47403 * 300.00036 * 13 11 9 17 17 C 1.50696 * 109.46903 * 175.00303 * 7 6 4 18 18 C 1.38236 * 120.00123 * 64.66289 * 17 7 6 19 19 C 1.38239 * 119.99622 * 179.78562 * 18 17 7 20 20 C 1.38236 * 120.00246 * 0.44044 * 19 18 17 21 21 C 1.38233 * 119.99859 * 359.81378 * 20 19 18 22 22 C 1.38231 * 119.99877 * 359.97438 * 21 20 19 23 23 C 1.46502 * 119.99853 * 96.08453 * 3 2 1 24 24 H 1.09004 * 109.47041 * 185.20354 * 23 3 2 25 25 C 1.53006 * 109.47139 * 65.20171 * 23 3 2 26 26 C 1.52996 * 109.47239 * 305.20278 * 23 3 2 27 27 O 1.42896 * 109.47555 * 66.21327 * 26 23 3 28 28 H 1.09003 * 109.46843 * 55.32911 * 1 2 3 29 29 H 1.08992 * 109.46997 * 175.33274 * 1 2 3 30 30 H 1.09005 * 109.47163 * 295.33218 * 1 2 3 31 31 H 1.08996 * 109.46715 * 240.00013 * 2 1 3 32 32 H 1.09003 * 109.46767 * 119.99922 * 2 1 3 33 33 H 1.09006 * 109.47223 * 300.00753 * 6 4 3 34 34 H 1.09008 * 109.46910 * 60.00361 * 6 4 3 35 35 H 0.97000 * 119.99735 * 180.02562 * 12 11 9 36 36 H 1.07998 * 119.99981 * 359.97438 * 18 17 7 37 37 H 1.08006 * 119.99631 * 180.27297 * 19 18 17 38 38 H 1.08006 * 119.99688 * 179.83129 * 20 19 18 39 39 H 1.08002 * 119.99645 * 179.97438 * 21 20 19 40 40 H 1.08010 * 119.99460 * 179.97438 * 22 21 20 41 41 H 1.09005 * 109.46800 * 59.99562 * 25 23 3 42 42 H 1.08995 * 109.46963 * 179.97438 * 25 23 3 43 43 H 1.08994 * 109.46751 * 300.00119 * 25 23 3 44 44 H 1.08999 * 109.47075 * 306.21263 * 26 23 3 45 45 H 1.09008 * 109.47395 * 186.21821 * 26 23 3 46 46 H 0.96695 * 114.00336 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1263 2.0578 -1.1606 5 8 2.5311 3.2011 -1.1606 6 6 1.7452 1.3934 -2.4584 7 6 1.9608 2.3717 -3.6148 8 1 2.9888 2.7338 -3.5975 9 6 1.0154 3.5364 -3.4704 10 1 0.0897 3.4163 -2.9273 11 6 1.3324 4.7552 -4.0317 12 7 2.4098 4.8761 -4.7760 13 14 0.2313 6.2347 -3.7349 14 1 0.1635 6.5172 -2.2786 15 1 0.7872 7.4156 -4.4432 16 1 -1.1326 5.9475 -4.2474 17 6 1.6974 1.6700 -4.9221 18 6 0.4278 1.2083 -5.2152 19 6 0.1853 0.5685 -6.4164 20 6 1.2143 0.3824 -7.3205 21 6 2.4850 0.8394 -7.0251 22 6 2.7265 1.4831 -5.8259 23 6 2.3894 2.0269 1.2616 24 1 2.6383 3.0717 1.0756 25 6 3.6017 1.3129 1.8628 26 6 1.2150 1.9488 2.2392 27 8 0.9817 0.5848 2.5955 28 1 -0.3633 0.5846 -0.8452 29 1 -0.3633 -1.0242 -0.0836 30 1 -0.3634 0.4397 0.9289 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3651 0.5097 -2.6100 34 1 0.6962 1.0993 -2.4216 35 1 2.6330 5.7337 -5.1705 36 1 -0.3752 1.3501 -4.5071 37 1 -0.8076 0.2117 -6.6473 38 1 1.0253 -0.1199 -8.2578 39 1 3.2890 0.6936 -7.7314 40 1 3.7195 1.8398 -5.5950 41 1 4.4384 1.3685 1.1663 42 1 3.8780 1.7937 2.8012 43 1 3.3527 0.2682 2.0488 44 1 0.3220 2.3590 1.7677 45 1 1.4493 2.5235 3.1353 46 1 0.2495 0.4597 3.2146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358822546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:38 Heat of formation + Delta-G solvation = -64.753972 kcal Electronic energy + Delta-G solvation = -26217.802548 eV Core-core repulsion = 22686.301026 eV Total energy + Delta-G solvation = -3531.501523 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 5.49 seconds Orbital eigenvalues (eV) -39.67841 -38.28450 -37.20171 -35.04985 -33.99777 -32.39985 -31.25928 -29.92569 -29.31166 -28.49207 -26.42444 -25.48659 -23.14061 -22.82186 -21.58417 -20.98609 -19.47705 -18.28819 -17.56044 -16.60849 -16.34710 -15.73352 -15.61625 -14.95922 -14.52292 -14.22274 -14.03051 -13.93695 -13.73736 -13.21584 -13.09571 -12.79417 -12.64446 -12.43527 -12.29562 -12.17564 -11.91121 -11.61728 -11.58927 -11.45304 -11.14043 -10.83348 -10.81632 -10.73429 -10.54219 -10.44183 -10.19798 -10.05678 -9.93873 -9.41384 -9.03313 -8.74555 -8.30414 -8.13044 -7.95916 -7.52093 -5.88630 -3.88202 2.37491 2.43228 3.40565 3.44309 3.48218 3.49428 3.55513 4.24957 4.55410 4.83132 4.92935 5.15375 5.27938 5.30290 5.41961 5.50491 5.56546 5.63744 5.70486 5.73013 5.76402 5.81073 5.86720 5.91625 6.08315 6.13392 6.16829 6.19442 6.30428 6.35347 6.39653 6.47073 6.50415 6.64291 6.87468 6.97557 7.08767 7.14675 7.38697 7.50790 7.51442 7.60868 7.90945 8.02693 8.05580 8.13767 8.43863 9.08960 9.11434 9.72896 11.21227 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012526 B = 0.005239 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.873420 B = 5343.652209 C = 6569.358996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.119 3.881 3 N -0.621 5.621 4 C 0.515 3.485 5 O -0.503 6.503 6 C -0.119 4.119 7 C 0.083 3.917 8 H 0.063 0.937 9 C -0.487 4.487 10 H 0.049 0.951 11 C 0.074 3.926 12 N -0.883 5.883 13 Si 0.885 3.115 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.280 1.280 17 C -0.016 4.016 18 C -0.113 4.113 19 C -0.133 4.133 20 C -0.156 4.156 21 C -0.129 4.129 22 C -0.115 4.115 23 C 0.138 3.862 24 H 0.108 0.892 25 C -0.153 4.153 26 C 0.068 3.932 27 O -0.563 6.563 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.259 0.741 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.049 0.951 46 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.232 -11.400 10.326 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.358 5.358 4 C 0.304 3.696 5 O -0.374 6.374 6 C -0.159 4.159 7 C 0.064 3.936 8 H 0.081 0.919 9 C -0.525 4.525 10 H 0.067 0.933 11 C -0.129 4.129 12 N -0.520 5.520 13 Si 0.714 3.286 14 H -0.204 1.204 15 H -0.215 1.215 16 H -0.206 1.206 17 C -0.017 4.017 18 C -0.131 4.131 19 C -0.151 4.151 20 C -0.174 4.174 21 C -0.147 4.147 22 C -0.133 4.133 23 C 0.034 3.966 24 H 0.126 0.874 25 C -0.212 4.212 26 C -0.010 4.010 27 O -0.368 6.368 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.130 0.870 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.377 -10.690 9.780 14.555 hybrid contribution -1.247 1.097 0.392 1.707 sum -2.625 -9.594 10.173 14.227 Atomic orbital electron populations 1.22278 0.96627 1.01326 1.02449 1.21344 0.94144 0.82750 1.02207 1.48190 1.67506 1.14248 1.05885 1.20970 0.77181 0.86535 0.84916 1.90725 1.43455 1.17089 1.86179 1.21821 1.01398 0.99161 0.93542 1.17792 1.00499 0.90795 0.84543 0.91857 1.20634 1.04464 0.93892 1.33516 0.93289 1.24818 0.94958 0.98408 0.94672 1.69917 1.25225 1.24671 1.32176 0.86771 0.80724 0.82784 0.78333 1.20351 1.21471 1.20580 1.20673 0.91960 0.90528 0.98502 1.20926 0.97177 0.98509 0.96526 1.20955 0.97911 1.01137 0.95103 1.20773 0.93752 1.03689 0.99202 1.20959 0.96399 1.00152 0.97212 1.21045 0.99380 0.98698 0.94154 1.20998 0.92795 0.99400 0.83373 0.87400 1.22011 0.97438 1.01470 1.00237 1.22549 0.98370 0.82958 0.97137 1.86543 1.56549 1.26224 1.67464 0.92683 0.92628 0.91949 0.91681 0.89740 0.91726 0.90340 0.93154 0.86998 0.87785 0.87919 0.87764 0.87033 0.92555 0.92389 0.91712 0.93189 0.93247 0.78205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 9.66 37.16 0.36 -1.67 16 2 C 0.12 1.53 4.91 -4.04 -0.02 1.51 16 3 N -0.62 -9.86 2.39 -166.11 -0.40 -10.26 16 4 C 0.52 10.53 7.38 -10.99 -0.08 10.45 16 5 O -0.50 -12.61 14.32 5.55 0.08 -12.53 16 6 C -0.12 -2.38 3.56 -27.88 -0.10 -2.48 16 7 C 0.08 2.01 1.53 -92.92 -0.14 1.87 16 8 H 0.06 1.77 7.25 -51.93 -0.38 1.40 16 9 C -0.49 -13.27 6.32 -34.44 -0.22 -13.48 16 10 H 0.05 1.33 7.81 -52.49 -0.41 0.92 16 11 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 12 N -0.88 -26.18 13.01 55.43 0.72 -25.45 16 13 Si 0.89 22.47 29.54 -169.99 -5.02 17.44 16 14 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 C -0.02 -0.36 4.77 -104.63 -0.50 -0.86 16 18 C -0.11 -2.36 8.87 -39.58 -0.35 -2.72 16 19 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 20 C -0.16 -2.81 10.05 -39.58 -0.40 -3.21 16 21 C -0.13 -2.46 10.05 -39.59 -0.40 -2.86 16 22 C -0.11 -2.49 9.67 -39.58 -0.38 -2.88 16 23 C 0.14 1.95 3.15 -67.93 -0.21 1.74 16 24 H 0.11 1.78 6.92 -51.93 -0.36 1.42 16 25 C -0.15 -1.87 9.05 37.16 0.34 -1.53 16 26 C 0.07 0.76 6.11 37.16 0.23 0.98 16 27 O -0.56 -5.22 8.45 -35.23 -0.30 -5.52 16 28 H 0.05 0.77 6.56 -51.93 -0.34 0.43 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.71 5.39 -51.93 -0.28 0.43 16 31 H 0.06 0.83 6.70 -51.93 -0.35 0.48 16 32 H 0.08 1.01 5.43 -51.93 -0.28 0.73 16 33 H 0.06 1.15 7.42 -51.93 -0.39 0.77 16 34 H 0.08 1.47 6.21 -51.92 -0.32 1.15 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.11 2.26 7.80 -52.49 -0.41 1.86 16 37 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 39 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.11 2.45 7.95 -52.48 -0.42 2.03 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.76 6.32 -51.93 -0.33 0.43 16 44 H 0.05 0.61 7.79 -51.93 -0.40 0.20 16 45 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 46 H 0.37 1.97 9.12 45.56 0.42 2.38 16 LS Contribution 363.30 15.07 5.47 5.47 Total: -1.00 -32.72 363.30 -8.16 -40.88 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.34 Total: 5.93 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -2.38 Total: -15.97 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.32 Total: -35.71 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.22 Total: -18.04 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.72 -8.16 -40.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358822546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.875 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.49 seconds