Wall clock time and date at job start Tue Mar 31 2020 09:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47324 * 2 1 4 4 C 1.34774 * 119.99969 * 276.08916 * 3 2 1 5 5 O 1.21287 * 119.99914 * 180.02562 * 4 3 2 6 6 C 1.50694 * 120.00288 * 359.97438 * 4 3 2 7 7 C 1.53002 * 109.47349 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47076 * 55.00495 * 7 6 4 9 9 C 1.50701 * 109.46936 * 295.00218 * 7 6 4 10 10 H 1.07998 * 120.00080 * 334.77617 * 9 7 6 11 11 C 1.37879 * 119.99312 * 154.77746 * 9 7 6 12 12 N 1.31509 * 120.00282 * 5.03562 * 11 9 7 13 13 Si 1.86800 * 119.99454 * 185.02946 * 11 9 7 14 14 H 1.48500 * 109.47455 * 60.00425 * 13 11 9 15 15 H 1.48502 * 109.47179 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47403 * 300.00036 * 13 11 9 17 17 C 1.50696 * 109.46903 * 175.00303 * 7 6 4 18 18 C 1.38236 * 120.00123 * 64.66289 * 17 7 6 19 19 C 1.38239 * 119.99622 * 179.78562 * 18 17 7 20 20 C 1.38236 * 120.00246 * 0.44044 * 19 18 17 21 21 C 1.38233 * 119.99859 * 359.81378 * 20 19 18 22 22 C 1.38231 * 119.99877 * 359.97438 * 21 20 19 23 23 C 1.46502 * 119.99853 * 96.08453 * 3 2 1 24 24 H 1.09004 * 109.47041 * 185.20354 * 23 3 2 25 25 C 1.53006 * 109.47139 * 65.20171 * 23 3 2 26 26 C 1.52996 * 109.47239 * 305.20278 * 23 3 2 27 27 O 1.42896 * 109.47555 * 66.21327 * 26 23 3 28 28 H 1.09003 * 109.46843 * 55.32911 * 1 2 3 29 29 H 1.08992 * 109.46997 * 175.33274 * 1 2 3 30 30 H 1.09005 * 109.47163 * 295.33218 * 1 2 3 31 31 H 1.08996 * 109.46715 * 240.00013 * 2 1 3 32 32 H 1.09003 * 109.46767 * 119.99922 * 2 1 3 33 33 H 1.09006 * 109.47223 * 300.00753 * 6 4 3 34 34 H 1.09008 * 109.46910 * 60.00361 * 6 4 3 35 35 H 0.97000 * 119.99735 * 180.02562 * 12 11 9 36 36 H 1.07998 * 119.99981 * 359.97438 * 18 17 7 37 37 H 1.08006 * 119.99631 * 180.27297 * 19 18 17 38 38 H 1.08006 * 119.99688 * 179.83129 * 20 19 18 39 39 H 1.08002 * 119.99645 * 179.97438 * 21 20 19 40 40 H 1.08010 * 119.99460 * 179.97438 * 22 21 20 41 41 H 1.09005 * 109.46800 * 59.99562 * 25 23 3 42 42 H 1.08995 * 109.46963 * 179.97438 * 25 23 3 43 43 H 1.08994 * 109.46751 * 300.00119 * 25 23 3 44 44 H 1.08999 * 109.47075 * 306.21263 * 26 23 3 45 45 H 1.09008 * 109.47395 * 186.21821 * 26 23 3 46 46 H 0.96695 * 114.00336 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1263 2.0578 -1.1606 5 8 2.5311 3.2011 -1.1606 6 6 1.7452 1.3934 -2.4584 7 6 1.9608 2.3717 -3.6148 8 1 2.9888 2.7338 -3.5975 9 6 1.0154 3.5364 -3.4704 10 1 0.0897 3.4163 -2.9273 11 6 1.3324 4.7552 -4.0317 12 7 2.4098 4.8761 -4.7760 13 14 0.2313 6.2347 -3.7349 14 1 0.1635 6.5172 -2.2786 15 1 0.7872 7.4156 -4.4432 16 1 -1.1326 5.9475 -4.2474 17 6 1.6974 1.6700 -4.9221 18 6 0.4278 1.2083 -5.2152 19 6 0.1853 0.5685 -6.4164 20 6 1.2143 0.3824 -7.3205 21 6 2.4850 0.8394 -7.0251 22 6 2.7265 1.4831 -5.8259 23 6 2.3894 2.0269 1.2616 24 1 2.6383 3.0717 1.0756 25 6 3.6017 1.3129 1.8628 26 6 1.2150 1.9488 2.2392 27 8 0.9817 0.5848 2.5955 28 1 -0.3633 0.5846 -0.8452 29 1 -0.3633 -1.0242 -0.0836 30 1 -0.3634 0.4397 0.9289 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3651 0.5097 -2.6100 34 1 0.6962 1.0993 -2.4216 35 1 2.6330 5.7337 -5.1705 36 1 -0.3752 1.3501 -4.5071 37 1 -0.8076 0.2117 -6.6473 38 1 1.0253 -0.1199 -8.2578 39 1 3.2890 0.6936 -7.7314 40 1 3.7195 1.8398 -5.5950 41 1 4.4384 1.3685 1.1663 42 1 3.8780 1.7937 2.8012 43 1 3.3527 0.2682 2.0488 44 1 0.3220 2.3590 1.7677 45 1 1.4493 2.5235 3.1353 46 1 0.2495 0.4597 3.2146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358822546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:37 Heat of formation + Delta-G solvation = -85.283547 kcal Electronic energy + Delta-G solvation = -26218.692777 eV Core-core repulsion = 22686.301026 eV Total energy + Delta-G solvation = -3532.391752 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.11422 -39.82372 -38.38576 -36.22631 -35.81204 -33.74249 -33.01291 -31.47939 -30.62267 -29.96361 -27.54130 -27.25988 -24.72077 -24.09491 -23.13893 -22.32515 -21.08728 -19.60745 -18.66383 -18.47381 -17.74366 -17.18387 -16.96474 -16.44102 -16.29054 -15.68496 -15.53267 -15.24734 -15.01945 -14.66039 -14.32469 -14.23483 -13.95927 -13.85384 -13.67973 -13.51904 -13.31839 -13.22327 -13.17160 -12.82279 -12.66621 -12.52784 -12.45326 -12.12415 -11.88581 -11.83185 -11.63474 -11.59802 -11.32830 -10.97375 -10.85685 -10.54952 -10.29155 -9.51839 -9.47342 -9.16390 -8.03805 -6.06948 0.80349 0.87019 1.33990 1.38551 1.43263 1.94709 2.20826 2.45474 3.20691 3.34846 3.44545 3.78790 4.13599 4.15075 4.25726 4.27292 4.36542 4.40791 4.44416 4.49269 4.55626 4.58779 4.60289 4.68613 4.73558 4.80689 4.88859 4.94178 4.97825 5.07463 5.11118 5.15958 5.23792 5.35897 5.38679 5.53265 5.55198 5.62911 5.78686 5.85243 5.89509 5.97935 6.19076 6.42972 6.48251 6.64897 6.97222 6.98276 7.53663 7.56902 9.05211 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012526 B = 0.005239 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.873420 B = 5343.652209 C = 6569.358996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.610 5.610 4 C 0.510 3.490 5 O -0.564 6.564 6 C -0.110 4.110 7 C 0.087 3.913 8 H 0.013 0.987 9 C -0.481 4.481 10 H 0.043 0.957 11 C 0.019 3.981 12 N -0.916 5.916 13 Si 0.936 3.064 14 H -0.283 1.283 15 H -0.288 1.288 16 H -0.266 1.266 17 C -0.040 4.040 18 C -0.127 4.127 19 C -0.127 4.127 20 C -0.148 4.148 21 C -0.129 4.129 22 C -0.139 4.139 23 C 0.126 3.874 24 H 0.075 0.925 25 C -0.142 4.142 26 C 0.083 3.917 27 O -0.565 6.565 28 H 0.031 0.969 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.254 0.746 36 H 0.112 0.888 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.131 0.869 40 H 0.091 0.909 41 H 0.036 0.964 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.036 0.964 45 H 0.073 0.927 46 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.245 -14.036 10.693 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.345 5.345 4 C 0.299 3.701 5 O -0.441 6.441 6 C -0.149 4.149 7 C 0.068 3.932 8 H 0.031 0.969 9 C -0.519 4.519 10 H 0.061 0.939 11 C -0.180 4.180 12 N -0.556 5.556 13 Si 0.763 3.237 14 H -0.209 1.209 15 H -0.213 1.213 16 H -0.191 1.191 17 C -0.041 4.041 18 C -0.145 4.145 19 C -0.145 4.145 20 C -0.166 4.166 21 C -0.147 4.147 22 C -0.158 4.158 23 C 0.022 3.978 24 H 0.093 0.907 25 C -0.200 4.200 26 C 0.004 3.996 27 O -0.373 6.373 28 H 0.050 0.950 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.130 0.870 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.149 0.851 40 H 0.109 0.891 41 H 0.055 0.945 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.055 0.945 45 H 0.091 0.909 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -3.433 -13.389 10.198 17.177 hybrid contribution -0.617 1.758 0.333 1.892 sum -4.049 -11.631 10.531 16.204 Atomic orbital electron populations 1.22227 0.95465 1.02549 1.01841 1.21598 0.95038 0.80812 1.03267 1.48196 1.65886 1.15148 1.05274 1.21077 0.76699 0.85966 0.86327 1.90697 1.46582 1.19654 1.87153 1.21670 1.02570 0.98603 0.92100 1.17562 0.96801 0.91326 0.87515 0.96891 1.20895 1.04218 0.95003 1.31750 0.93864 1.25512 0.96323 1.00959 0.95190 1.70061 1.26969 1.24659 1.33927 0.85963 0.79869 0.80199 0.77698 1.20927 1.21333 1.19125 1.20495 0.93426 0.92360 0.97784 1.21003 0.96118 0.99372 0.97997 1.21351 0.99836 0.99510 0.93778 1.21246 0.92676 1.02282 1.00355 1.21267 0.98151 0.98965 0.96290 1.21051 0.98543 1.00434 0.95756 1.21195 0.95375 0.97849 0.83364 0.90661 1.21918 0.95663 1.02007 1.00439 1.22232 0.96156 0.84244 0.96939 1.86465 1.57830 1.24694 1.68331 0.94992 0.90124 0.91173 0.91432 0.87857 0.89788 0.88888 0.93755 0.86966 0.84200 0.83858 0.85103 0.89073 0.94453 0.90322 0.90548 0.94539 0.90933 0.75648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.66 71.98 0.70 -2.85 16 2 C 0.11 2.76 4.91 86.38 0.42 3.19 16 3 N -0.61 -19.49 2.39 -797.83 -1.90 -21.39 16 4 C 0.51 21.83 7.38 87.66 0.65 22.47 16 5 O -0.56 -30.33 14.32 -3.05 -0.04 -30.37 16 6 C -0.11 -4.52 3.56 29.85 0.11 -4.42 16 7 C 0.09 4.47 1.53 -12.29 -0.02 4.45 16 8 H 0.01 0.78 7.25 -2.39 -0.02 0.76 16 9 C -0.48 -27.28 6.32 25.60 0.16 -27.12 16 10 H 0.04 2.43 7.81 -2.91 -0.02 2.41 16 11 C 0.02 1.10 5.45 84.66 0.46 1.57 16 12 N -0.92 -57.25 13.01 21.45 0.28 -56.98 16 13 Si 0.94 47.55 29.54 68.60 2.03 49.58 16 14 H -0.28 -14.48 7.11 99.48 0.71 -13.78 16 15 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 16 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 17 C -0.04 -1.87 4.77 -19.87 -0.09 -1.96 16 18 C -0.13 -5.19 8.87 22.27 0.20 -4.99 16 19 C -0.13 -4.32 10.05 22.27 0.22 -4.09 16 20 C -0.15 -4.79 10.05 22.27 0.22 -4.57 16 21 C -0.13 -4.71 10.05 22.27 0.22 -4.49 16 22 C -0.14 -6.24 9.67 22.27 0.22 -6.02 16 23 C 0.13 3.55 3.15 44.99 0.14 3.69 16 24 H 0.08 2.64 6.92 -2.39 -0.02 2.62 16 25 C -0.14 -3.32 9.05 71.98 0.65 -2.67 16 26 C 0.08 1.69 6.11 71.98 0.44 2.13 16 27 O -0.56 -8.62 8.45 -148.98 -1.26 -9.88 16 28 H 0.03 0.84 6.56 -2.39 -0.02 0.83 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.42 5.39 -2.38 -0.01 1.40 16 31 H 0.07 1.61 6.70 -2.39 -0.02 1.59 16 32 H 0.10 2.16 5.43 -2.39 -0.01 2.14 16 33 H 0.08 3.07 7.42 -2.38 -0.02 3.05 16 34 H 0.09 3.53 6.21 -2.38 -0.01 3.51 16 35 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.11 4.48 7.80 -2.91 -0.02 4.45 16 37 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 39 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 40 H 0.09 4.31 7.95 -2.91 -0.02 4.29 16 41 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.08 1.61 6.32 -2.39 -0.02 1.59 16 44 H 0.04 0.85 7.79 -2.39 -0.02 0.83 16 45 H 0.07 1.17 8.14 -2.38 -0.02 1.16 16 46 H 0.39 2.63 9.12 -74.06 -0.68 1.95 16 Total: -1.00 -76.20 363.30 4.10 -72.10 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.30 Total: 22.62 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 4.70 Total: -25.68 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -1.62 Total: -78.37 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -1.30 Total: -40.25 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -76.20 4.10 -72.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358822546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.183 kcal (2) G-P(sol) polarization free energy of solvation -76.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds