Wall clock time and date at job start Tue Mar 31 2020 09:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46497 * 109.46933 * 2 1 4 4 C 1.34773 * 120.00390 * 84.71056 * 3 2 1 5 5 O 1.21281 * 120.00350 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.99902 * 359.97438 * 4 3 2 7 7 C 1.53000 * 109.47208 * 179.97438 * 6 4 3 8 8 H 1.08994 * 109.46896 * 304.99936 * 7 6 4 9 9 C 1.50694 * 109.47048 * 65.00033 * 7 6 4 10 10 H 1.08001 * 120.00422 * 236.13708 * 9 7 6 11 11 C 1.37878 * 120.00038 * 56.13727 * 9 7 6 12 12 N 1.31517 * 120.00093 * 2.19007 * 11 9 7 13 13 Si 1.86804 * 120.00171 * 182.19228 * 11 9 7 14 14 H 1.48497 * 109.47115 * 89.99558 * 13 11 9 15 15 H 1.48498 * 109.47327 * 210.00030 * 13 11 9 16 16 H 1.48505 * 109.47081 * 329.99707 * 13 11 9 17 17 C 1.50705 * 109.47233 * 184.99844 * 7 6 4 18 18 C 1.38226 * 119.99999 * 153.94610 * 17 7 6 19 19 C 1.38237 * 119.99846 * 179.79081 * 18 17 7 20 20 C 1.38231 * 120.00106 * 0.44158 * 19 18 17 21 21 C 1.38237 * 119.99966 * 359.81284 * 20 19 18 22 22 C 1.38235 * 119.99900 * 359.97438 * 21 20 19 23 23 C 1.46505 * 119.99606 * 264.70510 * 3 2 1 24 24 H 1.09007 * 109.46889 * 173.56164 * 23 3 2 25 25 C 1.53000 * 109.47123 * 53.57013 * 23 3 2 26 26 C 1.52995 * 109.47706 * 293.56629 * 23 3 2 27 27 O 1.42899 * 109.46892 * 66.87903 * 26 23 3 28 28 H 1.09000 * 109.47219 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46981 * 299.99987 * 1 2 3 30 30 H 1.09000 * 109.46974 * 59.99870 * 1 2 3 31 31 H 1.08994 * 109.46522 * 239.99641 * 2 1 3 32 32 H 1.09000 * 109.46974 * 120.00130 * 2 1 3 33 33 H 1.09005 * 109.47042 * 59.99895 * 6 4 3 34 34 H 1.09004 * 109.47050 * 300.00184 * 6 4 3 35 35 H 0.97003 * 119.99729 * 180.02562 * 12 11 9 36 36 H 1.08002 * 120.00162 * 0.02562 * 18 17 7 37 37 H 1.08009 * 119.99991 * 180.27857 * 19 18 17 38 38 H 1.08003 * 120.00385 * 179.83440 * 20 19 18 39 39 H 1.08001 * 120.00036 * 180.02562 * 21 20 19 40 40 H 1.07995 * 120.00021 * 180.02562 * 22 21 20 41 41 H 1.09008 * 109.47208 * 59.99585 * 25 23 3 42 42 H 1.08996 * 109.47600 * 179.97438 * 25 23 3 43 43 H 1.08998 * 109.46918 * 299.99845 * 25 23 3 44 44 H 1.08993 * 109.47618 * 186.88748 * 26 23 3 45 45 H 1.09002 * 109.46761 * 306.88728 * 26 23 3 46 46 H 0.96700 * 113.99785 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1416 2.0525 1.1622 5 8 2.5462 3.1958 1.1622 6 6 1.7765 1.3824 2.4617 7 6 2.0075 2.3553 3.6197 8 1 3.0354 2.7168 3.5908 9 6 1.0612 3.5212 3.4926 10 1 1.4477 4.5290 3.4558 11 6 -0.2982 3.3013 3.4234 12 7 -0.7717 2.0775 3.5115 13 14 -1.4674 4.7417 3.2043 14 1 -1.6843 4.9873 1.7560 15 1 -2.7658 4.4284 3.8532 16 1 -0.8814 5.9545 3.8298 17 6 1.7603 1.6478 4.9272 18 6 2.3873 2.0849 6.0789 19 6 2.1571 1.4386 7.2790 20 6 1.3070 0.3496 7.3256 21 6 0.6840 -0.0907 6.1728 22 6 0.9107 0.5583 4.9736 23 6 2.3729 2.0327 -1.2634 24 1 2.6030 3.0822 -1.0790 25 6 1.1967 1.9321 -2.2367 26 6 3.5961 1.3411 -1.8684 27 8 3.2472 0.0112 -2.2579 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 2.3977 0.4977 2.6014 34 1 0.7269 1.0891 2.4369 35 1 -1.7281 1.9229 3.4624 36 1 3.0541 2.9337 6.0418 37 1 2.6436 1.7829 8.1797 38 1 1.1292 -0.1570 8.2627 39 1 0.0195 -0.9413 6.2093 40 1 0.4237 0.2145 4.0730 41 1 0.3252 2.4249 -1.8057 42 1 1.4602 2.4172 -3.1766 43 1 0.9665 0.8828 -2.4211 44 1 3.9340 1.8987 -2.7418 45 1 4.3959 1.3049 -1.1287 46 1 3.9765 -0.4877 -2.6508 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358822549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:51 Heat of formation + Delta-G solvation = -59.899108 kcal Electronic energy + Delta-G solvation = -26636.412903 eV Core-core repulsion = 23105.121903 eV Total energy + Delta-G solvation = -3531.291000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -39.53298 -38.20444 -37.05995 -35.11213 -34.19115 -32.00760 -30.95854 -29.80984 -29.38817 -28.20384 -26.20188 -25.74633 -22.94286 -22.64858 -21.53468 -20.78976 -19.49940 -18.21153 -17.51771 -16.48475 -16.20303 -15.55489 -15.35630 -15.05646 -14.62458 -14.10036 -13.87452 -13.76025 -13.54545 -13.24230 -12.86718 -12.67336 -12.55126 -12.38145 -12.18066 -11.96601 -11.71061 -11.50437 -11.43658 -11.28899 -11.05781 -10.87201 -10.80962 -10.68307 -10.47990 -10.21367 -10.12176 -9.95935 -9.86931 -9.27093 -9.10451 -8.63159 -8.35138 -7.98114 -7.77978 -7.41007 -5.93371 -4.01822 2.52375 2.60663 3.33935 3.39498 3.44966 3.63955 3.75641 4.29656 4.47286 4.99999 5.04560 5.21976 5.29997 5.35022 5.51223 5.55335 5.70294 5.83049 5.83495 5.83835 5.93068 5.94535 6.03118 6.07495 6.26433 6.29090 6.33221 6.44405 6.49189 6.53031 6.66903 6.72606 6.79004 6.81405 7.17261 7.19572 7.26467 7.31505 7.52604 7.57802 7.60568 7.71831 7.97313 8.10645 8.20216 8.26902 8.40446 8.94427 9.26174 9.60987 11.01907 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.005409 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.534914 B = 5175.543523 C = 6027.326058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.108 3.892 3 N -0.618 5.618 4 C 0.525 3.475 5 O -0.533 6.533 6 C -0.137 4.137 7 C 0.087 3.913 8 H 0.035 0.965 9 C -0.469 4.469 10 H 0.058 0.942 11 C 0.061 3.939 12 N -0.888 5.888 13 Si 0.890 3.110 14 H -0.283 1.283 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.024 4.024 18 C -0.131 4.131 19 C -0.141 4.141 20 C -0.155 4.155 21 C -0.142 4.142 22 C -0.069 4.069 23 C 0.138 3.862 24 H 0.106 0.894 25 C -0.154 4.154 26 C 0.069 3.931 27 O -0.564 6.564 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.137 0.863 35 H 0.259 0.741 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.135 0.865 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 -7.536 -7.843 12.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.015 4.015 3 N -0.353 5.353 4 C 0.316 3.684 5 O -0.408 6.408 6 C -0.176 4.176 7 C 0.067 3.933 8 H 0.054 0.946 9 C -0.507 4.507 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.528 5.528 13 Si 0.718 3.282 14 H -0.210 1.210 15 H -0.214 1.214 16 H -0.201 1.201 17 C -0.024 4.024 18 C -0.149 4.149 19 C -0.159 4.159 20 C -0.173 4.173 21 C -0.160 4.160 22 C -0.087 4.087 23 C 0.034 3.966 24 H 0.124 0.876 25 C -0.212 4.212 26 C -0.010 4.010 27 O -0.370 6.370 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.154 0.846 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.152 0.848 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 4.721 -6.781 -7.585 11.216 hybrid contribution -0.456 0.677 -0.241 0.851 sum 4.266 -6.104 -7.826 10.803 Atomic orbital electron populations 1.22373 0.96607 1.01397 1.03294 1.21572 0.93996 0.82755 1.03181 1.48137 1.67392 1.14298 1.05517 1.21222 0.75520 0.86315 0.85322 1.90579 1.45499 1.17879 1.86878 1.22016 1.05885 0.97896 0.91837 1.17651 0.96268 0.92712 0.86631 0.94626 1.20953 0.90414 0.92496 1.46812 0.92374 1.24865 0.98071 0.95650 0.95281 1.69679 1.13045 1.18860 1.51206 0.86608 0.80269 0.83240 0.78041 1.20952 1.21449 1.20071 1.20337 0.93301 0.92258 0.96538 1.20887 1.01462 0.99796 0.92770 1.20800 1.00507 0.97530 0.97073 1.20752 1.00405 0.98718 0.97411 1.21028 1.00719 1.00496 0.93770 1.21254 0.95261 0.94436 0.97778 1.20971 0.93214 0.97953 0.84469 0.87587 1.22074 0.98251 1.02739 0.98143 1.22656 0.97526 0.83203 0.97624 1.86487 1.40714 1.26406 1.83373 0.92666 0.90849 0.92866 0.88707 0.91432 0.93294 0.84553 0.93023 0.87666 0.88120 0.88318 0.88102 0.84751 0.92403 0.92620 0.91343 0.93331 0.93412 0.78270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 9.93 37.16 0.37 -2.37 16 2 C 0.11 1.63 5.00 -4.04 -0.02 1.61 16 3 N -0.62 -10.84 2.38 -166.11 -0.40 -11.23 16 4 C 0.53 11.44 7.39 -10.99 -0.08 11.36 16 5 O -0.53 -13.35 14.32 5.56 0.08 -13.27 16 6 C -0.14 -2.99 2.61 -27.88 -0.07 -3.06 16 7 C 0.09 2.11 1.96 -92.92 -0.18 1.93 16 8 H 0.04 0.89 7.92 -51.93 -0.41 0.48 16 9 C -0.47 -12.72 7.27 -34.44 -0.25 -12.97 16 10 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 11 C 0.06 1.62 5.14 -17.82 -0.09 1.53 16 12 N -0.89 -22.72 8.16 55.43 0.45 -22.26 16 13 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 C -0.02 -0.55 4.64 -104.62 -0.49 -1.04 16 18 C -0.13 -2.84 9.72 -39.59 -0.38 -3.22 16 19 C -0.14 -2.74 10.05 -39.58 -0.40 -3.14 16 20 C -0.15 -2.93 10.05 -39.58 -0.40 -3.33 16 21 C -0.14 -2.83 10.05 -39.58 -0.40 -3.23 16 22 C -0.07 -1.52 7.46 -39.58 -0.30 -1.82 16 23 C 0.14 2.12 3.15 -67.93 -0.21 1.90 16 24 H 0.11 1.83 6.93 -51.92 -0.36 1.47 16 25 C -0.15 -2.11 7.79 37.16 0.29 -1.82 16 26 C 0.07 0.82 6.84 37.16 0.25 1.07 16 27 O -0.56 -5.94 9.95 -35.23 -0.35 -6.29 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.36 6.59 -51.93 -0.34 1.02 16 30 H 0.05 0.80 6.02 -51.93 -0.31 0.49 16 31 H 0.09 1.30 5.02 -51.93 -0.26 1.04 16 32 H 0.07 1.02 6.66 -51.93 -0.35 0.67 16 33 H 0.05 0.98 7.41 -51.93 -0.38 0.59 16 34 H 0.14 3.13 3.09 -51.93 -0.16 2.97 16 35 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 36 H 0.11 2.18 8.06 -52.49 -0.42 1.75 16 37 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 38 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.13 3.02 5.33 -52.49 -0.28 2.74 16 41 H 0.06 0.89 7.90 -51.92 -0.41 0.48 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.91 5.98 -51.93 -0.31 0.60 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.37 2.25 9.12 45.56 0.42 2.67 16 LS Contribution 353.60 15.07 5.33 5.33 Total: -1.00 -29.92 353.60 -8.35 -38.28 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.09 Total: 9.30 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -2.36 Total: -16.60 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.06 Total: -33.50 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.27 Total: -19.57 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.92 -8.35 -38.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358822549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.621 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds