Wall clock time and date at job start Tue Mar 31 2020 09:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46493 * 109.47265 * 2 1 4 4 C 1.34779 * 120.00187 * 275.43119 * 3 2 1 5 5 O 1.21281 * 120.00049 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.99921 * 359.97438 * 4 3 2 7 7 C 1.52997 * 109.47118 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47143 * 55.00296 * 7 6 4 9 9 C 1.50702 * 109.47131 * 295.00474 * 7 6 4 10 10 H 1.07997 * 119.99844 * 325.02351 * 9 7 6 11 11 C 1.37877 * 119.99923 * 145.03043 * 9 7 6 12 12 N 1.31512 * 120.00220 * 5.03376 * 11 9 7 13 13 Si 1.86803 * 119.99899 * 185.03432 * 11 9 7 14 14 H 1.48496 * 109.47220 * 89.99689 * 13 11 9 15 15 H 1.48499 * 109.47444 * 209.99981 * 13 11 9 16 16 H 1.48500 * 109.47245 * 329.99987 * 13 11 9 17 17 C 1.50697 * 109.47263 * 175.00276 * 7 6 4 18 18 C 1.38244 * 119.99993 * 64.68622 * 17 7 6 19 19 C 1.38237 * 119.99753 * 179.79207 * 18 17 7 20 20 C 1.38235 * 119.99992 * 0.43453 * 19 18 17 21 21 C 1.38231 * 120.00005 * 359.81808 * 20 19 18 22 22 C 1.38227 * 120.00366 * 359.97328 * 21 20 19 23 23 C 1.46507 * 119.99849 * 95.42697 * 3 2 1 24 24 H 1.09000 * 109.46738 * 186.31599 * 23 3 2 25 25 C 1.52994 * 109.47119 * 306.31354 * 23 3 2 26 26 C 1.52994 * 109.47029 * 66.31529 * 23 3 2 27 27 O 1.42904 * 109.47418 * 294.03039 * 26 23 3 28 28 H 1.09003 * 109.47186 * 59.99794 * 1 2 3 29 29 H 1.09001 * 109.47362 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47344 * 299.99815 * 1 2 3 31 31 H 1.09007 * 109.46935 * 239.99843 * 2 1 3 32 32 H 1.09003 * 109.47186 * 120.00206 * 2 1 3 33 33 H 1.08999 * 109.47289 * 300.00710 * 6 4 3 34 34 H 1.09002 * 109.46799 * 60.00512 * 6 4 3 35 35 H 0.97000 * 120.00206 * 180.02562 * 12 11 9 36 36 H 1.07998 * 119.99624 * 359.97438 * 18 17 7 37 37 H 1.07997 * 119.99490 * 180.27942 * 19 18 17 38 38 H 1.08008 * 119.99503 * 179.83732 * 20 19 18 39 39 H 1.07999 * 119.99672 * 179.97438 * 21 20 19 40 40 H 1.08004 * 120.00356 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.47368 * 299.99964 * 25 23 3 42 42 H 1.09001 * 109.46677 * 60.00183 * 25 23 3 43 43 H 1.09003 * 109.47110 * 180.02562 * 25 23 3 44 44 H 1.09002 * 109.47395 * 174.02628 * 26 23 3 45 45 H 1.09011 * 109.47248 * 54.02894 * 26 23 3 46 46 H 0.96698 * 113.99849 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1388 2.0533 -1.1620 5 8 2.5435 3.1966 -1.1620 6 6 1.7717 1.3840 -2.4612 7 6 1.9999 2.3579 -3.6189 8 1 3.0275 2.7201 -3.5919 9 6 1.0530 3.5231 -3.4892 10 1 0.0584 3.3696 -3.0973 11 6 1.4564 4.7850 -3.8710 12 7 2.6298 4.9563 -4.4396 13 14 0.3363 6.2515 -3.5804 14 1 0.6210 6.8348 -2.2448 15 1 0.5781 7.2746 -4.6292 16 1 -1.0807 5.8108 -3.6362 17 6 1.7506 1.6512 -4.9264 18 6 0.4841 1.1888 -5.2317 19 6 0.2546 0.5443 -6.4330 20 6 1.2934 0.3544 -7.3249 21 6 2.5610 0.8122 -7.0173 22 6 2.7896 1.4604 -5.8181 23 6 2.3756 2.0317 1.2631 24 1 2.6074 3.0807 1.0786 25 6 1.2005 1.9330 2.2379 26 6 3.5983 1.3376 1.8663 27 8 3.2532 0.0012 2.2365 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.3932 0.4998 -2.6027 34 1 0.7224 1.0900 -2.4347 35 1 2.9138 5.8442 -4.7078 36 1 -0.3266 1.3336 -4.5330 37 1 -0.7358 0.1871 -6.6734 38 1 1.1146 -0.1514 -8.2623 39 1 3.3726 0.6634 -7.7141 40 1 3.7801 1.8177 -5.5776 41 1 0.3294 2.4276 1.8082 42 1 0.9687 0.8840 2.4223 43 1 1.4662 2.4174 3.1775 44 1 3.9286 1.8853 2.7489 45 1 4.4027 1.3146 1.1309 46 1 3.9826 -0.4997 2.6265 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358822551.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:58 Heat of formation + Delta-G solvation = -65.327589 kcal Electronic energy + Delta-G solvation = -26173.307914 eV Core-core repulsion = 22641.781517 eV Total energy + Delta-G solvation = -3531.526396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.63062 -38.31246 -37.14104 -35.20191 -33.97775 -32.19307 -31.25138 -29.97430 -29.57291 -28.53238 -26.25094 -25.48222 -23.12396 -22.78504 -21.62837 -20.99950 -19.50992 -18.30903 -17.58339 -16.54490 -16.34511 -15.75988 -15.61777 -14.94079 -14.50013 -14.13743 -14.12482 -13.88565 -13.74406 -13.37822 -13.02119 -12.70678 -12.56201 -12.53530 -12.28250 -12.12544 -11.90846 -11.73389 -11.60384 -11.48223 -11.23675 -10.88151 -10.81520 -10.68623 -10.53080 -10.40148 -10.22610 -10.02382 -9.99657 -9.37573 -8.98513 -8.71611 -8.28978 -8.08646 -8.01165 -7.56652 -5.88644 -3.87764 2.32229 2.38199 3.41051 3.46453 3.48270 3.51908 3.59987 4.23753 4.55816 4.78582 4.96878 5.15121 5.28141 5.32796 5.41646 5.49789 5.58325 5.65203 5.69074 5.72052 5.76139 5.82162 5.85489 5.88504 6.07487 6.11340 6.17496 6.19620 6.32698 6.35193 6.41581 6.44496 6.48996 6.61519 6.87361 6.95044 7.07001 7.15839 7.34221 7.49381 7.52464 7.57761 7.90624 7.99036 8.07394 8.13579 8.44423 9.12021 9.15998 9.73936 11.21723 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012016 B = 0.005343 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.740708 B = 5239.120282 C = 6553.456971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.104 3.896 3 N -0.620 5.620 4 C 0.514 3.486 5 O -0.499 6.499 6 C -0.119 4.119 7 C 0.078 3.922 8 H 0.072 0.928 9 C -0.490 4.490 10 H 0.049 0.951 11 C 0.079 3.921 12 N -0.882 5.882 13 Si 0.885 3.115 14 H -0.281 1.281 15 H -0.289 1.289 16 H -0.276 1.276 17 C -0.020 4.020 18 C -0.114 4.114 19 C -0.131 4.131 20 C -0.156 4.156 21 C -0.128 4.128 22 C -0.120 4.120 23 C 0.139 3.861 24 H 0.108 0.892 25 C -0.154 4.154 26 C 0.068 3.932 27 O -0.566 6.566 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.258 0.742 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.049 0.951 46 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 -12.184 9.297 15.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.019 4.019 3 N -0.357 5.357 4 C 0.303 3.697 5 O -0.371 6.371 6 C -0.159 4.159 7 C 0.059 3.941 8 H 0.090 0.910 9 C -0.527 4.527 10 H 0.067 0.933 11 C -0.124 4.124 12 N -0.519 5.519 13 Si 0.714 3.286 14 H -0.207 1.207 15 H -0.215 1.215 16 H -0.202 1.202 17 C -0.021 4.021 18 C -0.132 4.132 19 C -0.150 4.150 20 C -0.174 4.174 21 C -0.146 4.146 22 C -0.139 4.139 23 C 0.035 3.965 24 H 0.126 0.874 25 C -0.212 4.212 26 C -0.011 4.011 27 O -0.371 6.371 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.084 -11.183 8.951 14.324 hybrid contribution -0.155 0.797 0.229 0.843 sum -0.239 -10.386 9.180 13.864 Atomic orbital electron populations 1.22359 0.96950 1.01452 1.02652 1.21604 0.93638 0.83070 1.03578 1.48174 1.67682 1.14163 1.05666 1.20969 0.77194 0.86607 0.84908 1.90735 1.43203 1.16953 1.86221 1.21831 1.01291 0.99039 0.93732 1.17857 1.01076 0.90766 0.84361 0.90997 1.20669 0.98631 0.91412 1.41997 0.93263 1.24794 0.94766 0.98557 0.94284 1.69906 1.19571 1.22290 1.40156 0.86716 0.81021 0.83077 0.77826 1.20710 1.21521 1.20152 1.20760 0.91957 0.90690 0.98691 1.20949 0.97266 0.98497 0.96505 1.20973 0.97923 1.00948 0.95120 1.20787 0.93690 1.03633 0.99308 1.20971 0.96469 1.00021 0.97161 1.21086 0.99365 0.99088 0.94316 1.20990 0.93236 0.98107 0.84211 0.87379 1.22078 0.98203 1.02645 0.98279 1.22661 0.97555 0.82972 0.97892 1.86456 1.40988 1.25781 1.83908 0.92229 0.92384 0.92416 0.91440 0.88273 0.91932 0.90512 0.93215 0.86938 0.87700 0.87837 0.87682 0.86919 0.92424 0.91409 0.92467 0.93214 0.93272 0.78173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 9.93 37.15 0.37 -1.82 16 2 C 0.10 1.38 4.99 -4.05 -0.02 1.36 16 3 N -0.62 -10.01 2.38 -166.12 -0.40 -10.41 16 4 C 0.51 10.65 7.38 -10.99 -0.08 10.57 16 5 O -0.50 -12.67 14.32 5.56 0.08 -12.59 16 6 C -0.12 -2.39 3.57 -27.89 -0.10 -2.49 16 7 C 0.08 1.91 1.69 -92.93 -0.16 1.75 16 8 H 0.07 2.01 6.94 -51.93 -0.36 1.65 16 9 C -0.49 -13.36 6.32 -34.44 -0.22 -13.58 16 10 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 11 C 0.08 2.26 5.45 -17.82 -0.10 2.17 16 12 N -0.88 -26.27 12.84 55.43 0.71 -25.56 16 13 Si 0.89 22.58 29.54 -169.99 -5.02 17.56 16 14 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 C -0.02 -0.46 4.77 -104.62 -0.50 -0.96 16 18 C -0.11 -2.35 8.87 -39.58 -0.35 -2.70 16 19 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 20 C -0.16 -2.75 10.05 -39.58 -0.40 -3.15 16 21 C -0.13 -2.39 10.05 -39.59 -0.40 -2.79 16 22 C -0.12 -2.58 9.67 -39.59 -0.38 -2.96 16 23 C 0.14 2.00 3.15 -67.93 -0.21 1.79 16 24 H 0.11 1.82 6.93 -51.93 -0.36 1.46 16 25 C -0.15 -1.91 7.81 37.15 0.29 -1.62 16 26 C 0.07 0.77 6.84 37.15 0.25 1.03 16 27 O -0.57 -5.54 9.93 -35.23 -0.35 -5.89 16 28 H 0.06 0.84 6.57 -51.93 -0.34 0.50 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.71 6.04 -51.93 -0.31 0.40 16 31 H 0.07 0.88 6.67 -51.93 -0.35 0.53 16 32 H 0.10 1.21 4.98 -51.93 -0.26 0.95 16 33 H 0.06 1.13 7.41 -51.93 -0.38 0.74 16 34 H 0.08 1.46 6.23 -51.93 -0.32 1.13 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 36 H 0.11 2.25 7.80 -52.49 -0.41 1.85 16 37 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.10 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.11 2.43 7.95 -52.48 -0.42 2.01 16 41 H 0.06 0.78 7.91 -51.93 -0.41 0.37 16 42 H 0.07 0.81 6.01 -51.93 -0.31 0.50 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 46 H 0.37 2.06 9.12 45.56 0.42 2.47 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -32.90 364.35 -8.21 -41.11 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.33 Total: 6.50 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -2.40 Total: -16.21 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.32 Total: -35.96 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.27 Total: -18.48 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.90 -8.21 -41.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358822551.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.216 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds