Wall clock time and date at job start Tue Mar 31 2020 09:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46493 * 109.47265 * 2 1 4 4 C 1.34779 * 120.00187 * 275.43119 * 3 2 1 5 5 O 1.21281 * 120.00049 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.99921 * 359.97438 * 4 3 2 7 7 C 1.52997 * 109.47118 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47143 * 55.00296 * 7 6 4 9 9 C 1.50702 * 109.47131 * 295.00474 * 7 6 4 10 10 H 1.07997 * 119.99844 * 325.02351 * 9 7 6 11 11 C 1.37877 * 119.99923 * 145.03043 * 9 7 6 12 12 N 1.31512 * 120.00220 * 5.03376 * 11 9 7 13 13 Si 1.86803 * 119.99899 * 185.03432 * 11 9 7 14 14 H 1.48496 * 109.47220 * 89.99689 * 13 11 9 15 15 H 1.48499 * 109.47444 * 209.99981 * 13 11 9 16 16 H 1.48500 * 109.47245 * 329.99987 * 13 11 9 17 17 C 1.50697 * 109.47263 * 175.00276 * 7 6 4 18 18 C 1.38244 * 119.99993 * 64.68622 * 17 7 6 19 19 C 1.38237 * 119.99753 * 179.79207 * 18 17 7 20 20 C 1.38235 * 119.99992 * 0.43453 * 19 18 17 21 21 C 1.38231 * 120.00005 * 359.81808 * 20 19 18 22 22 C 1.38227 * 120.00366 * 359.97328 * 21 20 19 23 23 C 1.46507 * 119.99849 * 95.42697 * 3 2 1 24 24 H 1.09000 * 109.46738 * 186.31599 * 23 3 2 25 25 C 1.52994 * 109.47119 * 306.31354 * 23 3 2 26 26 C 1.52994 * 109.47029 * 66.31529 * 23 3 2 27 27 O 1.42904 * 109.47418 * 294.03039 * 26 23 3 28 28 H 1.09003 * 109.47186 * 59.99794 * 1 2 3 29 29 H 1.09001 * 109.47362 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47344 * 299.99815 * 1 2 3 31 31 H 1.09007 * 109.46935 * 239.99843 * 2 1 3 32 32 H 1.09003 * 109.47186 * 120.00206 * 2 1 3 33 33 H 1.08999 * 109.47289 * 300.00710 * 6 4 3 34 34 H 1.09002 * 109.46799 * 60.00512 * 6 4 3 35 35 H 0.97000 * 120.00206 * 180.02562 * 12 11 9 36 36 H 1.07998 * 119.99624 * 359.97438 * 18 17 7 37 37 H 1.07997 * 119.99490 * 180.27942 * 19 18 17 38 38 H 1.08008 * 119.99503 * 179.83732 * 20 19 18 39 39 H 1.07999 * 119.99672 * 179.97438 * 21 20 19 40 40 H 1.08004 * 120.00356 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.47368 * 299.99964 * 25 23 3 42 42 H 1.09001 * 109.46677 * 60.00183 * 25 23 3 43 43 H 1.09003 * 109.47110 * 180.02562 * 25 23 3 44 44 H 1.09002 * 109.47395 * 174.02628 * 26 23 3 45 45 H 1.09011 * 109.47248 * 54.02894 * 26 23 3 46 46 H 0.96698 * 113.99849 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1388 2.0533 -1.1620 5 8 2.5435 3.1966 -1.1620 6 6 1.7717 1.3840 -2.4612 7 6 1.9999 2.3579 -3.6189 8 1 3.0275 2.7201 -3.5919 9 6 1.0530 3.5231 -3.4892 10 1 0.0584 3.3696 -3.0973 11 6 1.4564 4.7850 -3.8710 12 7 2.6298 4.9563 -4.4396 13 14 0.3363 6.2515 -3.5804 14 1 0.6210 6.8348 -2.2448 15 1 0.5781 7.2746 -4.6292 16 1 -1.0807 5.8108 -3.6362 17 6 1.7506 1.6512 -4.9264 18 6 0.4841 1.1888 -5.2317 19 6 0.2546 0.5443 -6.4330 20 6 1.2934 0.3544 -7.3249 21 6 2.5610 0.8122 -7.0173 22 6 2.7896 1.4604 -5.8181 23 6 2.3756 2.0317 1.2631 24 1 2.6074 3.0807 1.0786 25 6 1.2005 1.9330 2.2379 26 6 3.5983 1.3376 1.8663 27 8 3.2532 0.0012 2.2365 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.3932 0.4998 -2.6027 34 1 0.7224 1.0900 -2.4347 35 1 2.9138 5.8442 -4.7078 36 1 -0.3266 1.3336 -4.5330 37 1 -0.7358 0.1871 -6.6734 38 1 1.1146 -0.1514 -8.2623 39 1 3.3726 0.6634 -7.7141 40 1 3.7801 1.8177 -5.5776 41 1 0.3294 2.4276 1.8082 42 1 0.9687 0.8840 2.4223 43 1 1.4662 2.4174 3.1775 44 1 3.9286 1.8853 2.7489 45 1 4.4027 1.3146 1.1309 46 1 3.9826 -0.4997 2.6265 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358822551.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:57 Heat of formation + Delta-G solvation = -86.221304 kcal Electronic energy + Delta-G solvation = -26174.213933 eV Core-core repulsion = 22641.781517 eV Total energy + Delta-G solvation = -3532.432416 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.08856 -39.83558 -38.33464 -36.40267 -35.80132 -33.64997 -32.90376 -31.50170 -30.85444 -30.05099 -27.50404 -27.15226 -24.73588 -24.06242 -23.16141 -22.32994 -21.10820 -19.65927 -18.67388 -18.48217 -17.76727 -17.17886 -16.97640 -16.45908 -16.28016 -15.67183 -15.45038 -15.27874 -15.02141 -14.67657 -14.50104 -14.11939 -14.02283 -13.84173 -13.62359 -13.51932 -13.33090 -13.25167 -13.07796 -12.86813 -12.74696 -12.55165 -12.47600 -12.24082 -11.94212 -11.82574 -11.69348 -11.56863 -11.27940 -10.94930 -10.91488 -10.54965 -10.24449 -9.54296 -9.44003 -9.18636 -8.04408 -6.06698 0.77844 0.84280 1.33246 1.37960 1.42797 1.97216 2.22445 2.45232 3.18719 3.35529 3.39818 3.81086 4.08528 4.15881 4.24847 4.26074 4.35426 4.39736 4.44321 4.47814 4.54889 4.58367 4.61517 4.64984 4.72967 4.82329 4.85467 4.93506 4.97727 5.02927 5.11794 5.12508 5.22486 5.36631 5.39160 5.50837 5.52996 5.63468 5.77975 5.83692 5.90039 5.96207 6.17491 6.42185 6.47008 6.66382 6.95103 7.00825 7.55384 7.59170 9.05597 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012016 B = 0.005343 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.740708 B = 5239.120282 C = 6553.456971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.609 5.609 4 C 0.509 3.491 5 O -0.560 6.560 6 C -0.109 4.109 7 C 0.083 3.917 8 H 0.023 0.977 9 C -0.482 4.482 10 H 0.043 0.957 11 C 0.024 3.976 12 N -0.917 5.917 13 Si 0.934 3.066 14 H -0.289 1.289 15 H -0.285 1.285 16 H -0.264 1.264 17 C -0.046 4.046 18 C -0.127 4.127 19 C -0.125 4.125 20 C -0.147 4.147 21 C -0.127 4.127 22 C -0.145 4.145 23 C 0.126 3.874 24 H 0.075 0.925 25 C -0.143 4.143 26 C 0.081 3.919 27 O -0.569 6.569 28 H 0.038 0.962 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.253 0.747 36 H 0.112 0.888 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.133 0.867 40 H 0.093 0.907 41 H 0.040 0.960 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.034 0.966 46 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 -15.038 9.428 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.344 5.344 4 C 0.298 3.702 5 O -0.437 6.437 6 C -0.149 4.149 7 C 0.064 3.936 8 H 0.042 0.958 9 C -0.520 4.520 10 H 0.061 0.939 11 C -0.175 4.175 12 N -0.557 5.557 13 Si 0.761 3.239 14 H -0.216 1.216 15 H -0.211 1.211 16 H -0.188 1.188 17 C -0.047 4.047 18 C -0.145 4.145 19 C -0.143 4.143 20 C -0.165 4.165 21 C -0.145 4.145 22 C -0.163 4.163 23 C 0.022 3.978 24 H 0.093 0.907 25 C -0.201 4.201 26 C 0.002 3.998 27 O -0.378 6.378 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.136 0.864 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.130 0.870 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.151 0.849 40 H 0.111 0.889 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.052 0.948 46 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -1.674 -14.106 9.125 16.883 hybrid contribution 0.345 1.508 0.229 1.564 sum -1.330 -12.598 9.354 15.747 Atomic orbital electron populations 1.22316 0.95986 1.02993 1.01661 1.21858 0.94376 0.81161 1.04712 1.48180 1.66129 1.15049 1.05059 1.21097 0.76707 0.86032 0.86335 1.90710 1.46318 1.19503 1.87193 1.21671 1.02403 0.98551 0.92273 1.17625 0.97466 0.91223 0.87330 0.95839 1.20932 0.98504 0.92555 1.40051 0.93864 1.25467 0.96010 1.01019 0.94955 1.70046 1.21208 1.22164 1.42292 0.85936 0.80166 0.80660 0.77145 1.21603 1.21060 1.18815 1.20573 0.93494 0.92670 0.97938 1.21012 0.96163 0.99367 0.97978 1.21364 0.99866 0.99317 0.93770 1.21266 0.92604 1.02162 1.00424 1.21282 0.98246 0.98758 0.96192 1.21098 0.98520 1.00769 0.95899 1.21184 0.95733 0.96874 0.83967 0.90664 1.21986 0.96441 1.03376 0.98252 1.22348 0.95082 0.84050 0.98270 1.86354 1.42403 1.24950 1.84125 0.94276 0.89554 0.92334 0.91073 0.86376 0.89918 0.89160 0.93792 0.87021 0.84143 0.83745 0.84929 0.88854 0.94103 0.90221 0.90422 0.90775 0.94795 0.75515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 9.93 71.98 0.71 -3.22 16 2 C 0.10 2.49 4.99 86.38 0.43 2.92 16 3 N -0.61 -19.83 2.38 -797.86 -1.90 -21.73 16 4 C 0.51 22.03 7.38 87.66 0.65 22.67 16 5 O -0.56 -30.45 14.32 -3.03 -0.04 -30.50 16 6 C -0.11 -4.53 3.57 29.85 0.11 -4.42 16 7 C 0.08 4.24 1.69 -12.29 -0.02 4.22 16 8 H 0.02 1.41 6.94 -2.39 -0.02 1.40 16 9 C -0.48 -27.45 6.32 25.60 0.16 -27.29 16 10 H 0.04 2.44 7.82 -2.91 -0.02 2.42 16 11 C 0.02 1.43 5.45 84.65 0.46 1.90 16 12 N -0.92 -57.73 12.84 21.45 0.28 -57.45 16 13 Si 0.93 47.92 29.54 68.60 2.03 49.94 16 14 H -0.29 -15.09 7.11 99.48 0.71 -14.39 16 15 H -0.28 -14.27 7.11 99.48 0.71 -13.56 16 16 H -0.26 -12.83 7.11 99.48 0.71 -12.12 16 17 C -0.05 -2.13 4.77 -19.86 -0.09 -2.22 16 18 C -0.13 -5.12 8.87 22.27 0.20 -4.93 16 19 C -0.13 -4.16 10.05 22.27 0.22 -3.94 16 20 C -0.15 -4.62 10.05 22.27 0.22 -4.39 16 21 C -0.13 -4.51 10.05 22.27 0.22 -4.28 16 22 C -0.14 -6.33 9.67 22.27 0.22 -6.11 16 23 C 0.13 3.65 3.15 44.99 0.14 3.79 16 24 H 0.08 2.69 6.93 -2.39 -0.02 2.68 16 25 C -0.14 -3.36 7.81 71.98 0.56 -2.80 16 26 C 0.08 1.75 6.84 71.98 0.49 2.24 16 27 O -0.57 -9.49 9.93 -148.98 -1.48 -10.97 16 28 H 0.04 1.06 6.57 -2.39 -0.02 1.04 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.33 6.04 -2.39 -0.01 1.32 16 31 H 0.07 1.73 6.67 -2.38 -0.02 1.71 16 32 H 0.12 2.53 4.98 -2.39 -0.01 2.52 16 33 H 0.08 3.03 7.41 -2.39 -0.02 3.02 16 34 H 0.09 3.46 6.23 -2.39 -0.01 3.45 16 35 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.11 4.41 7.80 -2.91 -0.02 4.39 16 37 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 38 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 39 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 40 H 0.09 4.32 7.95 -2.91 -0.02 4.29 16 41 H 0.04 1.09 7.91 -2.39 -0.02 1.07 16 42 H 0.08 1.69 6.01 -2.39 -0.01 1.67 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.03 0.83 8.14 -2.38 -0.02 0.82 16 46 H 0.39 3.03 9.12 -74.06 -0.68 2.35 16 Total: -1.00 -76.62 364.35 3.87 -72.75 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.30 Total: 23.81 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 4.69 Total: -25.86 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -1.63 Total: -79.18 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -1.52 Total: -41.47 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.94 kcal Total: -76.62 3.87 -72.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358822551.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.469 kcal (2) G-P(sol) polarization free energy of solvation -76.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds