Wall clock time and date at job start Tue Mar 31 2020 10:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 113.99996 * 2 1 4 4 C 1.53004 * 109.47142 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47233 * 175.14993 * 4 3 2 6 6 C 1.52996 * 109.46745 * 55.15231 * 4 3 2 7 7 C 1.50705 * 109.46984 * 174.99719 * 6 4 3 8 8 C 1.38235 * 119.99701 * 89.99821 * 7 6 4 9 9 C 1.38238 * 119.99992 * 180.02562 * 8 7 6 10 10 C 1.38231 * 119.99775 * 359.97438 * 9 8 7 11 11 C 1.38230 * 120.00299 * 0.26056 * 10 9 8 12 12 C 1.38235 * 120.00368 * 270.02607 * 7 6 4 13 13 N 1.46501 * 109.47118 * 295.15211 * 4 3 2 14 14 C 1.46494 * 120.00083 * 65.61051 * 13 4 3 15 15 C 1.34771 * 119.99576 * 245.61053 * 13 4 3 16 16 O 1.21280 * 120.00404 * 0.02562 * 15 13 4 17 17 C 1.50702 * 119.99620 * 180.02562 * 15 13 4 18 18 C 1.53004 * 109.47402 * 180.02562 * 17 15 13 19 19 C 1.50702 * 109.47402 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99925 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99693 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99596 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47208 * 89.99498 * 23 21 19 25 25 H 1.48494 * 109.47034 * 209.99614 * 23 21 19 26 26 H 1.48497 * 109.47088 * 329.99795 * 23 21 19 27 27 H 1.09006 * 109.47015 * 59.99663 * 1 2 3 28 28 H 1.08999 * 109.47778 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47353 * 299.99811 * 1 2 3 30 30 H 1.09008 * 109.47350 * 60.00145 * 3 2 1 31 31 H 1.09000 * 109.47409 * 300.00271 * 3 2 1 32 32 H 1.08999 * 109.47259 * 55.00474 * 6 4 3 33 33 H 1.08996 * 109.47354 * 294.99754 * 6 4 3 34 34 H 1.08006 * 120.00161 * 0.02562 * 8 7 6 35 35 H 1.07997 * 119.99749 * 179.97438 * 9 8 7 36 36 H 1.08001 * 119.99466 * 179.97438 * 10 9 8 37 37 H 1.08000 * 120.00204 * 179.72828 * 11 10 9 38 38 H 1.08003 * 119.99604 * 359.97438 * 12 7 6 39 39 H 1.08995 * 109.47272 * 95.35817 * 14 13 4 40 40 H 1.08992 * 109.47280 * 215.36084 * 14 13 4 41 41 H 1.08997 * 109.47291 * 335.36124 * 14 13 4 42 42 H 1.09002 * 109.47333 * 299.99812 * 17 15 13 43 43 H 1.08999 * 109.47679 * 59.99984 * 17 15 13 44 44 H 1.09002 * 109.46717 * 300.00181 * 18 17 15 45 45 H 1.09006 * 109.47006 * 59.99708 * 18 17 15 46 46 H 0.96999 * 120.00021 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9785 2.1767 -0.0862 6 6 3.9791 0.3225 -1.1828 7 6 5.4844 0.3042 -1.2545 8 6 6.1968 -0.6677 -0.5772 9 6 7.5775 -0.6842 -0.6425 10 6 8.2457 0.2708 -1.3856 11 6 7.5336 1.2456 -2.0590 12 6 6.1527 1.2596 -1.9972 13 7 3.9754 0.5611 1.2512 14 6 3.6147 -0.8284 1.5434 15 6 4.7120 1.2658 2.1328 16 8 5.0102 2.4162 1.8911 17 6 5.1650 0.6242 3.4189 18 6 5.9778 1.6327 4.2334 19 6 6.4314 0.9909 5.5192 20 1 6.1668 -0.0340 5.7339 21 6 7.1841 1.7121 6.4216 22 7 7.5067 2.9599 6.1599 23 14 7.7470 0.9163 8.0152 24 1 9.0682 0.2712 7.8066 25 1 7.8636 1.9530 9.0719 26 1 6.7566 -0.1080 8.4337 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6886 1.8464 0.8901 31 1 1.6885 1.8464 -0.8899 32 1 3.5765 0.7383 -2.1064 33 1 3.6093 -0.6943 -1.0506 34 1 5.6746 -1.4142 0.0031 35 1 8.1341 -1.4433 -0.1130 36 1 9.3245 0.2581 -1.4362 37 1 8.0559 1.9944 -2.6360 38 1 5.5960 2.0189 -2.5263 39 1 4.4283 -1.4867 1.2391 40 1 3.4373 -0.9405 2.6129 41 1 2.7100 -1.0919 0.9955 42 1 4.2944 0.3102 3.9948 43 1 5.7839 -0.2443 3.1935 44 1 6.8484 1.9470 3.6577 45 1 5.3585 2.5009 4.4589 46 1 8.0360 3.4674 6.7949 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360442428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:24 Heat of formation + Delta-G solvation = -64.059398 kcal Electronic energy + Delta-G solvation = -25784.083987 eV Core-core repulsion = 22252.612584 eV Total energy + Delta-G solvation = -3531.471404 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.07134 -38.75809 -37.96034 -35.53949 -33.48606 -32.84078 -31.02691 -30.75716 -30.01814 -27.11151 -26.52898 -25.75635 -25.32669 -22.52305 -22.40358 -21.37633 -20.16621 -18.50954 -17.21075 -16.82741 -16.39874 -16.19279 -15.76020 -15.55745 -15.07373 -15.05046 -14.78757 -14.54138 -14.35040 -13.46207 -13.25243 -13.19105 -12.76721 -12.69480 -12.42789 -12.31571 -12.16163 -12.10866 -11.94188 -11.80962 -11.46270 -11.18218 -11.04691 -10.90237 -10.81774 -10.65548 -10.55212 -9.88259 -9.84653 -9.55027 -9.09707 -8.88407 -8.75897 -8.61046 -8.28828 -8.19287 -5.91770 -3.95773 1.50306 1.56338 3.29096 3.35644 3.37792 3.42017 3.44882 3.64219 3.91155 4.50554 4.66228 4.92118 4.96117 5.03290 5.10233 5.14312 5.20063 5.23279 5.25907 5.30497 5.41401 5.43127 5.44689 5.58056 5.63553 5.65763 5.68540 5.72300 5.88974 6.06377 6.12792 6.20551 6.24068 6.31952 6.34070 6.60117 6.67192 6.73782 6.86627 6.93057 7.02382 7.15963 7.79370 7.88101 7.92996 8.12722 8.44263 8.86182 9.13005 9.67388 11.19240 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.004369 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.179327 B = 6406.612739 C = 7983.141579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.052 3.948 4 C 0.149 3.851 5 H 0.112 0.888 6 C -0.084 4.084 7 C -0.076 4.076 8 C -0.110 4.110 9 C -0.116 4.116 10 C -0.124 4.124 11 C -0.119 4.119 12 C -0.118 4.118 13 N -0.613 5.613 14 C 0.072 3.928 15 C 0.513 3.487 16 O -0.537 6.537 17 C -0.126 4.126 18 C 0.038 3.962 19 C -0.525 4.525 20 H 0.055 0.945 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.046 0.954 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.022 0.978 45 H 0.022 0.978 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.533 -8.427 -18.465 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.302 6.302 3 C -0.025 4.025 4 C 0.045 3.955 5 H 0.129 0.871 6 C -0.122 4.122 7 C -0.077 4.077 8 C -0.127 4.127 9 C -0.135 4.135 10 C -0.142 4.142 11 C -0.137 4.137 12 C -0.136 4.136 13 N -0.349 5.349 14 C -0.070 4.070 15 C 0.304 3.696 16 O -0.412 6.412 17 C -0.165 4.165 18 C 0.001 3.999 19 C -0.563 4.563 20 H 0.073 0.927 21 C -0.143 4.143 22 N -0.529 5.529 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.041 0.959 45 H 0.040 0.960 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.161 -7.809 -18.501 22.506 hybrid contribution 0.166 -0.156 0.989 1.015 sum -9.995 -7.965 -17.511 21.680 Atomic orbital electron populations 1.22732 0.81511 1.02550 0.99901 1.87846 1.19324 1.27775 1.95266 1.23049 0.93817 0.84917 1.00736 1.21060 0.91065 0.99003 0.84411 0.87055 1.20884 0.91445 1.01984 0.97879 1.19760 0.95351 0.95448 0.97093 1.21102 0.94073 0.98825 0.98742 1.21148 0.94558 0.99056 0.98691 1.21109 0.99723 0.95503 0.97912 1.21073 0.94222 0.98489 0.99924 1.20981 0.94464 0.98347 0.99802 1.47927 1.54394 1.13601 1.18953 1.22010 1.01137 0.81783 1.02118 1.21544 0.76196 0.86365 0.85543 1.90639 1.55477 1.17915 1.77186 1.21844 1.01159 1.01479 0.92056 1.18888 0.94776 0.93094 0.93173 1.21224 1.33254 0.98462 1.03350 0.92692 1.25013 0.96181 0.94831 0.98297 1.70001 1.38113 1.08668 1.36100 0.86616 0.79056 0.79012 0.83417 1.20695 1.21254 1.19901 0.94308 0.89769 0.94110 0.92562 0.92512 0.90455 0.89792 0.86139 0.86228 0.86410 0.86423 0.86496 0.93532 0.91472 0.88846 0.90496 0.90485 0.95937 0.96003 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.86 7.02 -35.23 -0.25 -4.11 16 3 C 0.05 0.57 5.73 37.16 0.21 0.78 16 4 C 0.15 1.95 2.53 -67.93 -0.17 1.78 16 5 H 0.11 1.72 6.92 -51.93 -0.36 1.36 16 6 C -0.08 -0.94 4.43 -27.88 -0.12 -1.06 16 7 C -0.08 -1.01 4.95 -104.62 -0.52 -1.53 16 8 C -0.11 -1.49 9.21 -39.58 -0.36 -1.86 16 9 C -0.12 -1.59 10.05 -39.58 -0.40 -1.98 16 10 C -0.12 -1.65 10.05 -39.59 -0.40 -2.05 16 11 C -0.12 -1.54 10.05 -39.59 -0.40 -1.94 16 12 C -0.12 -1.53 9.70 -39.58 -0.38 -1.92 16 13 N -0.61 -9.29 2.14 -173.95 -0.37 -9.66 16 14 C 0.07 0.88 8.76 59.84 0.52 1.41 16 15 C 0.51 10.36 7.67 -10.99 -0.08 10.27 16 16 O -0.54 -12.99 15.32 5.56 0.09 -12.91 16 17 C -0.13 -2.68 4.26 -27.88 -0.12 -2.80 16 18 C 0.04 1.06 4.26 -27.88 -0.12 0.94 16 19 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 20 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -27.87 13.29 55.43 0.74 -27.14 16 23 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.08 0.90 6.74 -51.93 -0.35 0.55 16 34 H 0.12 1.50 5.61 -52.48 -0.29 1.20 16 35 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.05 0.53 5.77 -51.93 -0.30 0.23 16 40 H 0.07 0.83 6.66 -51.93 -0.35 0.48 16 41 H 0.09 1.02 4.93 -51.93 -0.26 0.77 16 42 H 0.08 1.52 7.41 -51.93 -0.38 1.13 16 43 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 44 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 45 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 46 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -34.95 371.28 -8.18 -43.13 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.32 Total: 0.64 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -1.64 Total: -12.49 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.36 Total: -36.80 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.16 Total: -17.02 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.95 -8.18 -43.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360442428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.932 kcal (2) G-P(sol) polarization free energy of solvation -34.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds