Wall clock time and date at job start Tue Mar 31 2020 10:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 113.99996 * 2 1 4 4 C 1.53004 * 109.47142 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47233 * 175.14993 * 4 3 2 6 6 C 1.52996 * 109.46745 * 55.15231 * 4 3 2 7 7 C 1.50705 * 109.46984 * 174.99719 * 6 4 3 8 8 C 1.38235 * 119.99701 * 89.99821 * 7 6 4 9 9 C 1.38238 * 119.99992 * 180.02562 * 8 7 6 10 10 C 1.38231 * 119.99775 * 359.97438 * 9 8 7 11 11 C 1.38230 * 120.00299 * 0.26056 * 10 9 8 12 12 C 1.38235 * 120.00368 * 270.02607 * 7 6 4 13 13 N 1.46501 * 109.47118 * 295.15211 * 4 3 2 14 14 C 1.46494 * 120.00083 * 65.61051 * 13 4 3 15 15 C 1.34771 * 119.99576 * 245.61053 * 13 4 3 16 16 O 1.21280 * 120.00404 * 0.02562 * 15 13 4 17 17 C 1.50702 * 119.99620 * 180.02562 * 15 13 4 18 18 C 1.53004 * 109.47402 * 180.02562 * 17 15 13 19 19 C 1.50702 * 109.47402 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99925 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99693 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99596 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47208 * 89.99498 * 23 21 19 25 25 H 1.48494 * 109.47034 * 209.99614 * 23 21 19 26 26 H 1.48497 * 109.47088 * 329.99795 * 23 21 19 27 27 H 1.09006 * 109.47015 * 59.99663 * 1 2 3 28 28 H 1.08999 * 109.47778 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47353 * 299.99811 * 1 2 3 30 30 H 1.09008 * 109.47350 * 60.00145 * 3 2 1 31 31 H 1.09000 * 109.47409 * 300.00271 * 3 2 1 32 32 H 1.08999 * 109.47259 * 55.00474 * 6 4 3 33 33 H 1.08996 * 109.47354 * 294.99754 * 6 4 3 34 34 H 1.08006 * 120.00161 * 0.02562 * 8 7 6 35 35 H 1.07997 * 119.99749 * 179.97438 * 9 8 7 36 36 H 1.08001 * 119.99466 * 179.97438 * 10 9 8 37 37 H 1.08000 * 120.00204 * 179.72828 * 11 10 9 38 38 H 1.08003 * 119.99604 * 359.97438 * 12 7 6 39 39 H 1.08995 * 109.47272 * 95.35817 * 14 13 4 40 40 H 1.08992 * 109.47280 * 215.36084 * 14 13 4 41 41 H 1.08997 * 109.47291 * 335.36124 * 14 13 4 42 42 H 1.09002 * 109.47333 * 299.99812 * 17 15 13 43 43 H 1.08999 * 109.47679 * 59.99984 * 17 15 13 44 44 H 1.09002 * 109.46717 * 300.00181 * 18 17 15 45 45 H 1.09006 * 109.47006 * 59.99708 * 18 17 15 46 46 H 0.96999 * 120.00021 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9785 2.1767 -0.0862 6 6 3.9791 0.3225 -1.1828 7 6 5.4844 0.3042 -1.2545 8 6 6.1968 -0.6677 -0.5772 9 6 7.5775 -0.6842 -0.6425 10 6 8.2457 0.2708 -1.3856 11 6 7.5336 1.2456 -2.0590 12 6 6.1527 1.2596 -1.9972 13 7 3.9754 0.5611 1.2512 14 6 3.6147 -0.8284 1.5434 15 6 4.7120 1.2658 2.1328 16 8 5.0102 2.4162 1.8911 17 6 5.1650 0.6242 3.4189 18 6 5.9778 1.6327 4.2334 19 6 6.4314 0.9909 5.5192 20 1 6.1668 -0.0340 5.7339 21 6 7.1841 1.7121 6.4216 22 7 7.5067 2.9599 6.1599 23 14 7.7470 0.9163 8.0152 24 1 9.0682 0.2712 7.8066 25 1 7.8636 1.9530 9.0719 26 1 6.7566 -0.1080 8.4337 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6886 1.8464 0.8901 31 1 1.6885 1.8464 -0.8899 32 1 3.5765 0.7383 -2.1064 33 1 3.6093 -0.6943 -1.0506 34 1 5.6746 -1.4142 0.0031 35 1 8.1341 -1.4433 -0.1130 36 1 9.3245 0.2581 -1.4362 37 1 8.0559 1.9944 -2.6360 38 1 5.5960 2.0189 -2.5263 39 1 4.4283 -1.4867 1.2391 40 1 3.4373 -0.9405 2.6129 41 1 2.7100 -1.0919 0.9955 42 1 4.2944 0.3102 3.9948 43 1 5.7839 -0.2443 3.1935 44 1 6.8484 1.9470 3.6577 45 1 5.3585 2.5009 4.4589 46 1 8.0360 3.4674 6.7949 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360442428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:23 Heat of formation + Delta-G solvation = -84.540413 kcal Electronic energy + Delta-G solvation = -25784.972111 eV Core-core repulsion = 22252.612584 eV Total energy + Delta-G solvation = -3532.359527 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.31228 -39.91739 -38.92691 -36.73437 -35.58911 -34.11348 -32.81637 -31.76327 -31.19577 -27.89759 -27.87526 -27.40951 -26.26828 -24.16701 -23.42989 -22.65686 -21.45845 -19.89098 -18.87382 -17.96555 -17.83271 -17.16352 -16.93775 -16.80332 -16.47325 -16.14977 -16.12373 -15.82805 -15.69118 -14.62759 -14.58889 -14.27806 -14.17034 -14.01507 -13.83980 -13.54277 -13.28761 -13.24718 -13.09119 -12.91361 -12.85773 -12.78453 -12.45831 -12.41431 -12.03936 -11.92969 -11.78878 -11.61748 -11.56955 -11.29990 -10.70692 -10.56868 -10.45898 -9.78242 -9.70134 -9.37754 -8.17748 -6.32048 0.49110 0.54702 1.41281 1.44352 1.55276 1.74754 2.10891 2.43348 2.83197 2.89699 3.15018 3.68091 3.88816 3.97940 4.08534 4.15637 4.20597 4.28176 4.32299 4.41587 4.45816 4.48343 4.55080 4.59142 4.62826 4.63800 4.69678 4.72684 4.78779 4.92357 4.95499 5.03040 5.08244 5.19160 5.25506 5.29767 5.48012 5.59942 5.62494 5.66117 5.68010 5.79346 5.85242 6.17912 6.18017 6.19730 6.48521 6.86031 7.33514 7.38522 8.95054 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.004369 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.179327 B = 6406.612739 C = 7983.141579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.391 6.391 3 C 0.062 3.938 4 C 0.145 3.855 5 H 0.084 0.916 6 C -0.072 4.072 7 C -0.089 4.089 8 C -0.125 4.125 9 C -0.135 4.135 10 C -0.141 4.141 11 C -0.133 4.133 12 C -0.132 4.132 13 N -0.597 5.597 14 C 0.066 3.934 15 C 0.511 3.489 16 O -0.590 6.590 17 C -0.114 4.114 18 C 0.047 3.953 19 C -0.542 4.542 20 H 0.074 0.926 21 C -0.005 4.005 22 N -0.938 5.938 23 Si 0.973 3.027 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.255 1.255 27 H 0.052 0.948 28 H 0.101 0.899 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.095 0.905 44 H -0.022 1.022 45 H -0.020 1.020 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.963 -10.927 -18.766 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.310 6.310 3 C -0.016 4.016 4 C 0.041 3.959 5 H 0.102 0.898 6 C -0.110 4.110 7 C -0.089 4.089 8 C -0.142 4.142 9 C -0.153 4.153 10 C -0.159 4.159 11 C -0.151 4.151 12 C -0.150 4.150 13 N -0.330 5.330 14 C -0.075 4.075 15 C 0.301 3.699 16 O -0.470 6.470 17 C -0.154 4.154 18 C 0.010 3.990 19 C -0.580 4.580 20 H 0.092 0.908 21 C -0.203 4.203 22 N -0.578 5.578 23 Si 0.797 3.203 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.178 1.178 27 H 0.070 0.930 28 H 0.119 0.881 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.132 0.868 42 H 0.116 0.884 43 H 0.113 0.887 44 H -0.004 1.004 45 H -0.002 1.002 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.639 -10.373 -18.838 24.453 hybrid contribution 0.564 0.625 1.005 1.311 sum -11.075 -9.748 -17.834 23.145 Atomic orbital electron populations 1.22906 0.79871 1.03861 1.00422 1.87786 1.20955 1.26942 1.95363 1.22841 0.91918 0.85577 1.01236 1.21193 0.92750 0.97968 0.83953 0.89826 1.20845 0.90108 1.02256 0.97759 1.20064 0.96584 0.95312 0.96913 1.21342 0.94296 0.99432 0.99159 1.21437 0.95089 0.99669 0.99136 1.21413 1.00738 0.95671 0.98044 1.21411 0.94664 0.98876 1.00102 1.21327 0.94840 0.98797 1.00023 1.47846 1.52223 1.14373 1.18568 1.22267 1.02575 0.79899 1.02764 1.21258 0.76817 0.85822 0.85974 1.90620 1.58009 1.20136 1.78284 1.21593 1.01289 1.00012 0.92470 1.18642 0.93250 0.93379 0.93749 1.21685 1.33251 0.99343 1.03700 0.90774 1.26126 0.96109 0.95273 1.02754 1.70184 1.39036 1.10717 1.37831 0.85330 0.79029 0.78173 0.77780 1.19696 1.21074 1.17849 0.92951 0.88094 0.94452 0.94234 0.89927 0.88066 0.88615 0.85123 0.85191 0.85007 0.84684 0.84785 0.92104 0.91236 0.86833 0.88379 0.88687 1.00396 1.00153 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.39 -6.68 7.02 -148.98 -1.05 -7.73 16 3 C 0.06 1.22 5.73 71.98 0.41 1.63 16 4 C 0.14 3.65 2.53 44.99 0.11 3.76 16 5 H 0.08 2.63 6.92 -2.39 -0.02 2.61 16 6 C -0.07 -1.45 4.43 29.85 0.13 -1.32 16 7 C -0.09 -2.25 4.95 -19.86 -0.10 -2.35 16 8 C -0.12 -3.29 9.21 22.27 0.21 -3.09 16 9 C -0.14 -3.67 10.05 22.27 0.22 -3.45 16 10 C -0.14 -3.74 10.05 22.27 0.22 -3.52 16 11 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 12 C -0.13 -3.37 9.70 22.27 0.22 -3.15 16 13 N -0.60 -17.61 2.14 -822.63 -1.76 -19.37 16 14 C 0.07 1.46 8.76 127.77 1.12 2.58 16 15 C 0.51 21.10 7.67 87.66 0.67 21.77 16 16 O -0.59 -30.19 15.32 -3.03 -0.05 -30.24 16 17 C -0.11 -4.91 4.26 29.85 0.13 -4.78 16 18 C 0.05 2.75 4.26 29.85 0.13 2.88 16 19 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 20 H 0.07 3.96 7.74 -2.91 -0.02 3.94 16 21 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 22 N -0.94 -60.65 13.29 21.45 0.28 -60.36 16 23 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 26 H -0.25 -10.92 7.11 99.48 0.71 -10.21 16 27 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 1.59 8.09 -2.39 -0.02 1.57 16 33 H 0.10 1.73 6.74 -2.39 -0.02 1.72 16 34 H 0.13 3.03 5.61 -2.91 -0.02 3.01 16 35 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 37 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.06 1.21 5.77 -2.39 -0.01 1.20 16 40 H 0.07 1.53 6.66 -2.39 -0.02 1.52 16 41 H 0.11 2.11 4.93 -2.39 -0.01 2.09 16 42 H 0.10 3.78 7.41 -2.39 -0.02 3.76 16 43 H 0.09 3.72 8.11 -2.39 -0.02 3.70 16 44 H -0.02 -1.48 8.10 -2.39 -0.02 -1.50 16 45 H -0.02 -1.31 8.10 -2.38 -0.02 -1.32 16 46 H 0.26 15.87 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -79.69 371.28 6.05 -73.64 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.95 Total: 19.01 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 5.64 Total: -22.00 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -1.48 Total: -79.74 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -1.09 Total: -37.97 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -79.69 6.05 -73.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360442428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.899 kcal (2) G-P(sol) polarization free energy of solvation -79.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds