Wall clock time and date at job start Tue Mar 31 2020 09:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42898 * 109.46698 * 2 1 4 4 C 1.42902 * 113.99875 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.57161 * 29.84747 * 4 3 2 6 6 C 1.53095 * 109.52516 * 269.68743 * 4 3 2 7 7 O 1.42905 * 109.41496 * 182.48155 * 6 4 3 8 8 C 1.42901 * 114.09104 * 61.16153 * 7 6 4 9 9 C 1.53089 * 109.41856 * 298.83553 * 8 7 6 10 10 C 1.53179 * 109.16011 * 57.61509 * 9 8 7 11 11 H 1.08998 * 109.61743 * 62.92861 * 10 9 8 12 12 N 1.46905 * 109.54268 * 183.15311 * 10 9 8 13 13 C 1.46894 * 110.99871 * 274.55180 * 12 10 9 14 14 C 1.50700 * 109.47358 * 179.97438 * 13 12 10 15 15 C 1.38643 * 119.74249 * 89.99991 * 14 13 12 16 16 C 1.37621 * 120.24520 * 180.02562 * 15 14 13 17 17 C 1.40714 * 119.74475 * 0.02562 * 16 15 14 18 18 C 1.41398 * 120.24295 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00118 * 335.86329 * 18 17 16 20 20 C 1.39950 * 120.00038 * 155.86801 * 18 17 16 21 21 N 1.30826 * 119.99575 * 342.02239 * 20 18 17 22 22 Si 1.86800 * 120.00049 * 162.29776 * 20 18 17 23 23 H 1.48503 * 109.46850 * 89.99693 * 22 20 18 24 24 H 1.48497 * 109.47014 * 209.99674 * 22 20 18 25 25 H 1.48495 * 109.46998 * 330.00320 * 22 20 18 26 26 C 1.40716 * 119.51294 * 0.27240 * 17 16 15 27 27 C 1.37622 * 119.74409 * 359.46835 * 26 17 16 28 28 H 1.08995 * 109.47252 * 59.99718 * 1 2 3 29 29 H 1.09002 * 109.46689 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46928 * 299.99711 * 1 2 3 31 31 H 1.08994 * 109.46751 * 240.00657 * 2 1 3 32 32 H 1.08995 * 109.47252 * 120.00282 * 2 1 3 33 33 H 1.09000 * 109.47905 * 302.46804 * 6 4 3 34 34 H 1.08999 * 109.47619 * 62.50366 * 6 4 3 35 35 H 1.08997 * 109.48554 * 58.82877 * 8 7 6 36 36 H 1.09009 * 109.47508 * 178.84552 * 8 7 6 37 37 H 1.09003 * 109.52295 * 297.70831 * 9 8 7 38 38 H 1.09000 * 109.52363 * 177.51942 * 9 8 7 39 39 H 1.00900 * 110.99492 * 150.60189 * 12 10 9 40 40 H 1.09001 * 109.47174 * 60.00318 * 13 12 10 41 41 H 1.08995 * 109.47945 * 300.00396 * 13 12 10 42 42 H 1.07996 * 119.87707 * 0.02989 * 15 14 13 43 43 H 1.07997 * 120.12528 * 180.02562 * 16 15 14 44 44 H 0.97001 * 119.99390 * 179.97438 * 21 20 18 45 45 H 1.08007 * 120.13001 * 179.71227 * 26 17 16 46 46 H 1.08000 * 119.87489 * 180.27435 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8654 0.6010 -0.5102 6 6 3.9397 1.5087 1.4437 7 8 5.3585 1.6797 1.4416 8 6 5.7993 2.8894 0.8216 9 6 5.3653 2.8964 -0.6464 10 6 3.8427 2.7470 -0.7212 11 1 3.3670 3.6023 -0.2415 12 7 3.4243 2.6769 -2.1277 13 6 3.2461 4.0215 -2.6915 14 6 2.8185 3.9096 -4.1323 15 6 1.4695 3.8495 -4.4467 16 6 1.0675 3.7466 -5.7588 17 6 2.0315 3.7020 -6.7829 18 6 1.6302 3.5970 -8.1347 19 1 0.6694 3.1699 -8.3811 20 6 2.4781 4.0464 -9.1533 21 7 3.4588 4.8661 -8.8739 22 14 2.2050 3.4821 -10.9129 23 1 1.2879 4.4274 -11.5991 24 1 3.5055 3.4464 -11.6288 25 1 1.6042 2.1241 -10.9096 26 6 3.3980 3.7575 -6.4515 27 6 3.7769 3.8656 -5.1329 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.4735 2.3444 1.9656 34 1 3.6866 0.5771 1.9498 35 1 5.3576 3.7432 1.3354 36 1 6.8860 2.9525 0.8799 37 1 5.8390 2.0661 -1.1703 38 1 5.6621 3.8374 -1.1095 39 1 2.5833 2.1284 -2.2278 40 1 4.1878 4.5675 -2.6338 41 1 2.4820 4.5546 -2.1258 42 1 0.7315 3.8835 -3.6590 43 1 0.0162 3.7004 -6.0016 44 1 4.0467 5.1773 -9.5799 45 1 4.1464 3.7193 -7.2292 46 1 4.8249 3.9128 -4.8765 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362030242.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:05 Heat of formation + Delta-G solvation = -85.687838 kcal Electronic energy + Delta-G solvation = -24980.114320 eV Core-core repulsion = 21447.705037 eV Total energy + Delta-G solvation = -3532.409283 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.01333 -37.71316 -37.60692 -35.72688 -33.73201 -31.97245 -31.50839 -29.95570 -29.35494 -29.07292 -26.40648 -24.16287 -23.62103 -22.91853 -22.35560 -20.92112 -20.28792 -19.79220 -17.27024 -17.25554 -16.67609 -16.31415 -15.56926 -15.31777 -15.27893 -14.82083 -14.54545 -14.12844 -13.91800 -13.62522 -13.39718 -13.09088 -13.01884 -12.60587 -12.51124 -12.32370 -12.06192 -11.89351 -11.66865 -11.50641 -11.42279 -11.24606 -11.04024 -10.96039 -10.94499 -10.59183 -10.43514 -10.30484 -10.15038 -9.59831 -9.38048 -9.32352 -9.10096 -8.06538 -7.40904 -7.27887 -6.74583 -4.32635 2.76504 3.07456 3.11166 3.11489 3.20101 3.28348 3.81530 3.94293 4.32463 4.53936 4.66969 4.70473 4.90527 4.92688 4.98403 5.06590 5.12480 5.20869 5.37653 5.40358 5.49121 5.52816 5.58713 5.73459 5.75658 5.78752 5.88218 5.91543 5.97800 5.98775 6.21767 6.29677 6.40962 6.48269 6.82309 6.98621 7.09264 7.13754 7.32764 7.39021 7.41140 7.64430 7.75800 7.92847 8.08379 8.18604 8.33116 8.67345 8.92090 9.00951 10.19985 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019471 B = 0.002979 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.708815 B = 9397.013656 C =10352.653127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.378 6.378 4 C 0.056 3.944 5 H 0.078 0.922 6 C 0.045 3.955 7 O -0.378 6.378 8 C 0.058 3.942 9 C -0.142 4.142 10 C 0.089 3.911 11 H 0.047 0.953 12 N -0.675 5.675 13 C 0.126 3.874 14 C -0.213 4.213 15 C -0.084 4.084 16 C -0.228 4.228 17 C 0.113 3.887 18 C -0.464 4.464 19 H 0.076 0.924 20 C 0.076 3.924 21 N -0.793 5.793 22 Si 0.906 3.094 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.261 1.261 26 C -0.168 4.168 27 C -0.078 4.078 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.346 0.654 40 H 0.060 0.940 41 H 0.019 0.981 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.280 0.720 45 H 0.116 0.884 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.385 -5.937 16.655 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.298 6.298 4 C -0.003 4.003 5 H 0.096 0.904 6 C -0.033 4.033 7 O -0.297 6.297 8 C -0.019 4.019 9 C -0.181 4.181 10 C -0.022 4.022 11 H 0.065 0.935 12 N -0.308 5.308 13 C -0.002 4.002 14 C -0.214 4.214 15 C -0.103 4.103 16 C -0.248 4.248 17 C 0.110 3.890 18 C -0.493 4.493 19 H 0.094 0.906 20 C -0.141 4.141 21 N -0.418 5.418 22 Si 0.730 3.270 23 H -0.195 1.195 24 H -0.201 1.201 25 H -0.185 1.185 26 C -0.187 4.187 27 C -0.097 4.097 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.166 0.834 40 H 0.079 0.921 41 H 0.037 0.963 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.134 0.866 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.205 -5.829 16.379 17.525 hybrid contribution -0.976 0.125 -0.587 1.146 sum 1.230 -5.704 15.792 16.835 Atomic orbital electron populations 1.21749 0.93625 1.02260 1.03270 1.22552 0.95682 0.83588 1.00196 1.87912 1.20151 1.26784 1.94912 1.22942 0.81628 0.99685 0.96046 0.90416 1.23003 0.81733 1.02370 0.96164 1.87933 1.20989 1.41577 1.79214 1.22700 1.00205 0.86677 0.92363 1.22256 0.95168 1.04134 0.96511 1.21605 0.95247 0.95253 0.90071 0.93482 1.60722 1.40321 1.16192 1.13519 1.20581 0.98394 0.88193 0.92998 1.18883 0.93188 1.16881 0.92466 1.20364 0.94096 1.00431 0.95379 1.20923 0.97526 1.13567 0.92739 1.17616 0.91425 0.87304 0.92615 1.19587 1.03049 1.36027 0.90664 0.90556 1.25907 0.93980 0.92668 1.01569 1.69835 1.14240 1.22319 1.35414 0.86352 0.78642 0.80408 0.81557 1.19544 1.20092 1.18474 1.21307 0.96491 1.06499 0.94446 1.20484 0.96476 0.99627 0.93157 0.91467 0.91112 0.92058 0.92832 0.93592 0.92445 0.88924 0.93157 0.88443 0.90025 0.90178 0.83401 0.92115 0.96320 0.89928 0.89218 0.90923 0.86569 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.99 16 2 C 0.06 0.56 6.47 37.16 0.24 0.81 16 3 O -0.38 -4.72 9.29 -35.23 -0.33 -5.05 16 4 C 0.06 0.67 2.31 -26.59 -0.06 0.61 16 5 H 0.08 0.97 7.79 -51.93 -0.40 0.57 16 6 C 0.05 0.48 6.47 37.21 0.24 0.72 16 7 O -0.38 -4.39 10.77 -35.23 -0.38 -4.77 16 8 C 0.06 0.58 6.84 37.20 0.25 0.83 16 9 C -0.14 -1.68 5.63 -26.59 -0.15 -1.83 16 10 C 0.09 1.18 2.28 -67.52 -0.15 1.03 16 11 H 0.05 0.65 7.80 -51.93 -0.41 0.25 16 12 N -0.68 -10.94 6.30 -107.80 -0.68 -11.62 16 13 C 0.13 2.26 5.60 -4.98 -0.03 2.23 16 14 C -0.21 -4.65 5.42 -104.33 -0.56 -5.21 16 15 C -0.08 -1.90 9.67 -39.66 -0.38 -2.28 16 16 C -0.23 -5.67 9.80 -38.87 -0.38 -6.05 16 17 C 0.11 3.05 5.57 -106.82 -0.60 2.45 16 18 C -0.46 -12.45 9.06 -37.74 -0.34 -12.79 16 19 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 20 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 21 N -0.79 -20.65 10.96 55.55 0.61 -20.04 16 22 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 26 C -0.17 -4.42 8.70 -38.87 -0.34 -4.76 16 27 C -0.08 -1.86 9.67 -39.66 -0.38 -2.24 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 32 H 0.05 0.39 7.96 -51.93 -0.41 -0.03 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.85 7.96 -51.93 -0.41 0.43 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 0.94 7.58 -51.93 -0.39 0.55 16 39 H 0.35 5.89 7.77 -39.29 -0.31 5.58 16 40 H 0.06 1.05 7.48 -51.93 -0.39 0.66 16 41 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 42 H 0.08 1.68 8.06 -52.49 -0.42 1.25 16 43 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 44 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 45 H 0.12 3.16 6.16 -52.48 -0.32 2.84 16 46 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -27.99 371.09 -10.23 -38.22 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -7.66 Total: 9.57 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: -2.35 Total: -25.62 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: -0.07 Total: -31.66 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.71 Total: -9.83 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.99 -10.23 -38.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362030242.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.470 kcal (2) G-P(sol) polarization free energy of solvation -27.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds