Wall clock time and date at job start Tue Mar 31 2020 09:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42898 * 109.46698 * 2 1 4 4 C 1.42902 * 113.99875 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.57161 * 29.84747 * 4 3 2 6 6 C 1.53095 * 109.52516 * 269.68743 * 4 3 2 7 7 O 1.42905 * 109.41496 * 182.48155 * 6 4 3 8 8 C 1.42901 * 114.09104 * 61.16153 * 7 6 4 9 9 C 1.53089 * 109.41856 * 298.83553 * 8 7 6 10 10 C 1.53179 * 109.16011 * 57.61509 * 9 8 7 11 11 H 1.08998 * 109.61743 * 62.92861 * 10 9 8 12 12 N 1.46905 * 109.54268 * 183.15311 * 10 9 8 13 13 C 1.46894 * 110.99871 * 274.55180 * 12 10 9 14 14 C 1.50700 * 109.47358 * 179.97438 * 13 12 10 15 15 C 1.38643 * 119.74249 * 89.99991 * 14 13 12 16 16 C 1.37621 * 120.24520 * 180.02562 * 15 14 13 17 17 C 1.40714 * 119.74475 * 0.02562 * 16 15 14 18 18 C 1.41398 * 120.24295 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00118 * 335.86329 * 18 17 16 20 20 C 1.39950 * 120.00038 * 155.86801 * 18 17 16 21 21 N 1.30826 * 119.99575 * 342.02239 * 20 18 17 22 22 Si 1.86800 * 120.00049 * 162.29776 * 20 18 17 23 23 H 1.48503 * 109.46850 * 89.99693 * 22 20 18 24 24 H 1.48497 * 109.47014 * 209.99674 * 22 20 18 25 25 H 1.48495 * 109.46998 * 330.00320 * 22 20 18 26 26 C 1.40716 * 119.51294 * 0.27240 * 17 16 15 27 27 C 1.37622 * 119.74409 * 359.46835 * 26 17 16 28 28 H 1.08995 * 109.47252 * 59.99718 * 1 2 3 29 29 H 1.09002 * 109.46689 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46928 * 299.99711 * 1 2 3 31 31 H 1.08994 * 109.46751 * 240.00657 * 2 1 3 32 32 H 1.08995 * 109.47252 * 120.00282 * 2 1 3 33 33 H 1.09000 * 109.47905 * 302.46804 * 6 4 3 34 34 H 1.08999 * 109.47619 * 62.50366 * 6 4 3 35 35 H 1.08997 * 109.48554 * 58.82877 * 8 7 6 36 36 H 1.09009 * 109.47508 * 178.84552 * 8 7 6 37 37 H 1.09003 * 109.52295 * 297.70831 * 9 8 7 38 38 H 1.09000 * 109.52363 * 177.51942 * 9 8 7 39 39 H 1.00900 * 110.99492 * 150.60189 * 12 10 9 40 40 H 1.09001 * 109.47174 * 60.00318 * 13 12 10 41 41 H 1.08995 * 109.47945 * 300.00396 * 13 12 10 42 42 H 1.07996 * 119.87707 * 0.02989 * 15 14 13 43 43 H 1.07997 * 120.12528 * 180.02562 * 16 15 14 44 44 H 0.97001 * 119.99390 * 179.97438 * 21 20 18 45 45 H 1.08007 * 120.13001 * 179.71227 * 26 17 16 46 46 H 1.08000 * 119.87489 * 180.27435 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8654 0.6010 -0.5102 6 6 3.9397 1.5087 1.4437 7 8 5.3585 1.6797 1.4416 8 6 5.7993 2.8894 0.8216 9 6 5.3653 2.8964 -0.6464 10 6 3.8427 2.7470 -0.7212 11 1 3.3670 3.6023 -0.2415 12 7 3.4243 2.6769 -2.1277 13 6 3.2461 4.0215 -2.6915 14 6 2.8185 3.9096 -4.1323 15 6 1.4695 3.8495 -4.4467 16 6 1.0675 3.7466 -5.7588 17 6 2.0315 3.7020 -6.7829 18 6 1.6302 3.5970 -8.1347 19 1 0.6694 3.1699 -8.3811 20 6 2.4781 4.0464 -9.1533 21 7 3.4588 4.8661 -8.8739 22 14 2.2050 3.4821 -10.9129 23 1 1.2879 4.4274 -11.5991 24 1 3.5055 3.4464 -11.6288 25 1 1.6042 2.1241 -10.9096 26 6 3.3980 3.7575 -6.4515 27 6 3.7769 3.8656 -5.1329 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.4735 2.3444 1.9656 34 1 3.6866 0.5771 1.9498 35 1 5.3576 3.7432 1.3354 36 1 6.8860 2.9525 0.8799 37 1 5.8390 2.0661 -1.1703 38 1 5.6621 3.8374 -1.1095 39 1 2.5833 2.1284 -2.2278 40 1 4.1878 4.5675 -2.6338 41 1 2.4820 4.5546 -2.1258 42 1 0.7315 3.8835 -3.6590 43 1 0.0162 3.7004 -6.0016 44 1 4.0467 5.1773 -9.5799 45 1 4.1464 3.7193 -7.2292 46 1 4.8249 3.9128 -4.8765 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362030242.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:04 Heat of formation + Delta-G solvation = -102.088937 kcal Electronic energy + Delta-G solvation = -24980.825525 eV Core-core repulsion = 21447.705037 eV Total energy + Delta-G solvation = -3533.120488 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.94851 -39.51551 -38.47525 -37.05393 -35.49675 -33.22015 -32.43722 -31.38483 -31.03846 -30.34500 -28.03403 -25.54416 -24.49554 -24.03470 -23.41305 -22.83542 -21.63842 -21.20280 -19.21538 -18.17300 -17.57349 -17.32215 -17.16766 -16.45535 -16.36659 -15.95688 -15.68941 -15.60746 -15.55579 -14.98804 -14.74540 -14.33369 -14.06468 -13.97437 -13.80545 -13.52685 -13.38175 -13.26238 -13.14647 -12.82169 -12.71590 -12.46276 -12.42336 -12.26222 -12.11928 -12.07149 -11.81698 -11.52045 -11.31941 -11.23348 -11.00019 -10.99247 -10.27040 -9.39866 -9.33999 -9.15820 -8.63590 -6.32653 0.95521 1.15909 1.37608 1.48247 1.54127 2.20914 2.44016 2.68801 2.99682 3.26979 3.60925 3.79097 3.80369 4.02635 4.08203 4.16982 4.19749 4.28390 4.32521 4.32637 4.45534 4.48038 4.54314 4.57914 4.65505 4.66617 4.71614 4.81905 4.84883 4.89732 5.01754 5.05160 5.06929 5.16571 5.23959 5.27821 5.39281 5.47448 5.71943 5.94495 5.99844 6.10383 6.14989 6.27534 6.29252 6.39928 6.47195 6.71780 6.95070 7.05194 8.33585 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019471 B = 0.002979 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.708815 B = 9397.013656 C =10352.653127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.395 6.395 4 C 0.060 3.940 5 H 0.070 0.930 6 C 0.049 3.951 7 O -0.390 6.390 8 C 0.059 3.941 9 C -0.138 4.138 10 C 0.088 3.912 11 H 0.046 0.954 12 N -0.681 5.681 13 C 0.135 3.865 14 C -0.200 4.200 15 C -0.085 4.085 16 C -0.244 4.244 17 C 0.081 3.919 18 C -0.504 4.504 19 H 0.073 0.927 20 C 0.035 3.965 21 N -0.825 5.825 22 Si 0.981 3.019 23 H -0.262 1.262 24 H -0.265 1.265 25 H -0.260 1.260 26 C -0.191 4.191 27 C -0.084 4.084 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.116 0.884 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.341 0.659 40 H 0.070 0.930 41 H 0.027 0.973 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.288 0.712 45 H 0.098 0.902 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.578 -6.371 18.201 19.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.315 6.315 4 C 0.002 3.998 5 H 0.088 0.912 6 C -0.029 4.029 7 O -0.309 6.309 8 C -0.017 4.017 9 C -0.177 4.177 10 C -0.022 4.022 11 H 0.064 0.936 12 N -0.312 5.312 13 C 0.007 3.993 14 C -0.202 4.202 15 C -0.103 4.103 16 C -0.263 4.263 17 C 0.078 3.922 18 C -0.533 4.533 19 H 0.092 0.908 20 C -0.179 4.179 21 N -0.451 5.451 22 Si 0.802 3.198 23 H -0.186 1.186 24 H -0.190 1.190 25 H -0.184 1.184 26 C -0.211 4.211 27 C -0.103 4.103 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.134 0.866 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.160 0.840 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.127 0.873 43 H 0.112 0.888 44 H 0.098 0.902 45 H 0.116 0.884 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.403 -6.261 17.952 19.163 hybrid contribution -1.037 0.263 -0.907 1.402 sum 1.366 -5.999 17.045 18.121 Atomic orbital electron populations 1.21760 0.92957 1.03364 1.02572 1.22720 0.96247 0.82693 1.00881 1.87890 1.20249 1.28264 1.95051 1.22877 0.81640 0.98487 0.96838 0.91222 1.23026 0.81310 1.03453 0.95083 1.87928 1.21461 1.42294 1.79223 1.22792 1.01414 0.86643 0.90894 1.22227 0.93897 1.03653 0.97921 1.21711 0.96174 0.96089 0.88262 0.93565 1.60650 1.39969 1.14886 1.15740 1.20462 0.99013 0.89419 0.90453 1.19299 0.92622 1.13864 0.94389 1.20658 0.95171 0.99338 0.95145 1.21129 0.97585 1.14080 0.93548 1.17953 0.92197 0.88472 0.93533 1.19836 1.03894 1.37937 0.91642 0.90838 1.26761 0.93349 0.92081 1.05759 1.69885 1.15073 1.23023 1.37133 0.85223 0.78968 0.79791 0.75837 1.18623 1.18960 1.18361 1.21270 0.96085 1.08476 0.95256 1.20710 0.97813 0.99122 0.92605 0.93102 0.89162 0.91740 0.93381 0.91646 0.91941 0.87370 0.91964 0.86629 0.91215 0.90080 0.84014 0.91160 0.95471 0.87253 0.88770 0.90163 0.88354 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 10.28 71.98 0.74 -1.73 16 2 C 0.05 0.94 6.47 71.98 0.47 1.40 16 3 O -0.39 -9.25 9.29 -148.98 -1.38 -10.63 16 4 C 0.06 1.34 2.31 30.69 0.07 1.41 16 5 H 0.07 1.66 7.79 -2.39 -0.02 1.64 16 6 C 0.05 0.92 6.47 72.01 0.47 1.38 16 7 O -0.39 -8.10 10.77 -148.98 -1.60 -9.71 16 8 C 0.06 1.04 6.84 72.01 0.49 1.54 16 9 C -0.14 -3.02 5.63 30.68 0.17 -2.85 16 10 C 0.09 2.18 2.28 45.03 0.10 2.28 16 11 H 0.05 1.18 7.80 -2.39 -0.02 1.16 16 12 N -0.68 -21.11 6.30 -494.96 -3.12 -24.23 16 13 C 0.13 4.58 5.60 85.56 0.48 5.06 16 14 C -0.20 -8.59 5.42 -19.67 -0.11 -8.70 16 15 C -0.08 -3.77 9.67 22.22 0.21 -3.55 16 16 C -0.24 -12.35 9.80 22.73 0.22 -12.13 16 17 C 0.08 4.50 5.57 -21.29 -0.12 4.38 16 18 C -0.50 -28.01 9.06 23.46 0.21 -27.80 16 19 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 20 C 0.04 1.82 5.14 85.26 0.44 2.26 16 21 N -0.83 -44.14 10.96 21.83 0.24 -43.90 16 22 Si 0.98 38.97 29.59 68.60 2.03 41.00 16 23 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 24 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 25 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 26 C -0.19 -10.39 8.70 22.73 0.20 -10.19 16 27 C -0.08 -3.98 9.67 22.22 0.21 -3.76 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.05 0.93 8.09 -2.39 -0.02 0.91 16 32 H 0.07 0.95 7.96 -2.39 -0.02 0.93 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.11 1.68 7.96 -2.39 -0.02 1.66 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.74 7.58 -2.39 -0.02 1.72 16 39 H 0.34 11.22 7.77 -89.69 -0.70 10.52 16 40 H 0.07 2.28 7.48 -2.39 -0.02 2.26 16 41 H 0.03 0.89 8.00 -2.39 -0.02 0.87 16 42 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 43 H 0.09 4.54 8.06 -2.91 -0.02 4.51 16 44 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 45 H 0.10 5.60 6.16 -2.91 -0.02 5.58 16 46 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -61.29 371.09 0.68 -60.60 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: 0.26 Total: 37.85 kcal Atomic # 6 Polarization: -55.26 SS G_CDS: 4.27 Total: -50.99 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -2.88 Total: -68.13 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -2.99 Total: -20.34 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -61.29 0.68 -60.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362030242.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.485 kcal (2) G-P(sol) polarization free energy of solvation -61.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds