Wall clock time and date at job start Tue Mar 31 2020 10:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00241 * 2 1 4 4 C 1.53003 * 110.01784 * 304.21481 * 3 2 1 5 5 N 1.46897 * 109.46775 * 301.88180 * 4 3 2 6 6 C 1.46902 * 110.99975 * 183.81025 * 5 4 3 7 7 C 1.50704 * 109.46919 * 179.97438 * 6 5 4 8 8 C 1.38319 * 119.96750 * 269.72286 * 7 6 5 9 9 C 1.38281 * 120.14266 * 179.77097 * 8 7 6 10 10 C 1.38130 * 120.06198 * 0.51090 * 9 8 7 11 11 C 1.38859 * 119.93155 * 359.74551 * 10 9 8 12 12 O 1.35747 * 120.06518 * 179.97438 * 11 10 9 13 13 C 1.34825 * 117.00165 * 354.71319 * 12 11 10 14 14 H 1.08001 * 120.00566 * 5.12823 * 13 12 11 15 15 C 1.38656 * 119.99748 * 185.12787 * 13 12 11 16 16 N 1.31556 * 120.00568 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99713 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47318 * 59.99824 * 17 15 13 19 19 H 1.48501 * 109.47060 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46885 * 299.99430 * 17 15 13 21 21 C 1.38077 * 119.96310 * 90.00838 * 7 6 5 22 22 C 1.54270 * 110.03414 * 65.60226 * 3 2 1 23 23 C 1.54965 * 104.16014 * 95.75319 * 22 3 2 24 24 C 1.54892 * 102.77364 * 37.89134 * 23 22 3 25 25 C 1.53871 * 110.03810 * 182.82025 * 3 2 1 26 26 H 1.09002 * 109.47387 * 65.82669 * 1 2 3 27 27 H 1.09001 * 109.47125 * 185.83275 * 1 2 3 28 28 H 1.09007 * 109.47174 * 305.83100 * 1 2 3 29 29 H 1.09002 * 109.47604 * 181.88229 * 4 3 2 30 30 H 1.09001 * 109.47384 * 61.87721 * 4 3 2 31 31 H 1.00897 * 111.00201 * 307.76969 * 5 4 3 32 32 H 1.09005 * 109.46768 * 60.00235 * 6 5 4 33 33 H 1.08999 * 109.47509 * 300.00220 * 6 5 4 34 34 H 1.08007 * 119.92924 * 0.02562 * 8 7 6 35 35 H 1.07997 * 119.97356 * 180.26035 * 9 8 7 36 36 H 1.07999 * 120.02965 * 179.76897 * 10 9 8 37 37 H 0.96994 * 120.00126 * 180.02562 * 16 15 13 38 38 H 1.07996 * 120.03386 * 359.94804 * 21 7 6 39 39 H 1.09003 * 110.49300 * 214.40810 * 22 3 2 40 40 H 1.09008 * 110.48453 * 337.04814 * 22 3 2 41 41 H 1.08993 * 110.72114 * 279.57347 * 23 22 3 42 42 H 1.08998 * 110.76229 * 156.22199 * 23 22 3 43 43 H 1.08998 * 110.48582 * 203.39927 * 24 23 22 44 44 H 1.09007 * 110.48335 * 80.75987 * 24 23 22 45 45 H 1.09003 * 110.03178 * 359.95050 * 25 3 2 46 46 H 1.09001 * 110.03532 * 121.37620 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4848 2.1127 -1.1888 5 7 1.7969 1.4048 -2.4375 6 6 1.3871 2.1942 -3.6067 7 6 1.7231 1.4378 -4.8662 8 6 2.9533 1.6172 -5.4725 9 6 3.2672 0.9215 -6.6256 10 6 2.3483 0.0529 -7.1814 11 6 1.1104 -0.1254 -6.5781 12 8 0.2050 -0.9780 -7.1223 13 6 0.5257 -1.5372 -8.3065 14 1 1.5004 -1.3653 -8.7387 15 6 -0.3961 -2.3330 -8.9696 16 7 -1.5836 -2.5421 -8.4435 17 14 0.0484 -3.1083 -10.6099 18 1 1.2274 -3.9941 -10.4355 19 1 -1.1010 -3.9057 -11.1082 20 1 0.3718 -2.0410 -11.5904 21 6 0.8002 0.5710 -5.4170 22 6 1.6783 2.0317 1.3199 23 6 2.9175 1.7770 2.2148 24 6 4.0912 1.8660 1.2079 25 6 3.5437 1.1997 -0.0711 26 1 -0.3634 0.4208 -0.9375 27 1 -0.3633 -1.0224 0.1044 28 1 -0.3634 0.6016 0.8332 29 1 1.9587 3.0943 -1.1994 30 1 0.4051 2.2314 -1.0986 31 1 2.7771 1.1703 -2.4850 32 1 1.9150 3.1479 -3.6043 33 1 0.3128 2.3734 -3.5657 34 1 3.6719 2.2990 -5.0420 35 1 4.2301 1.0605 -7.0944 36 1 2.5925 -0.4874 -8.0841 37 1 -2.2282 -3.0991 -8.9072 38 1 -0.1616 0.4342 -4.9453 39 1 1.5470 3.0996 1.1453 40 1 0.7840 1.6060 1.7752 41 1 2.8701 0.7861 2.6663 42 1 3.0062 2.5477 2.9805 43 1 4.9570 1.3196 1.5821 44 1 4.3501 2.9071 1.0149 45 1 3.8446 0.1526 -0.1048 46 1 3.9136 1.7234 -0.9526 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380318114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:57 Heat of formation + Delta-G solvation = -54.132916 kcal Electronic energy + Delta-G solvation = -24830.634446 eV Core-core repulsion = 21299.593487 eV Total energy + Delta-G solvation = -3531.040959 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.94635 -38.99853 -36.89691 -35.75594 -35.08091 -32.25275 -31.07330 -29.23697 -29.15434 -28.44054 -26.60831 -25.49249 -24.76044 -23.22808 -21.59846 -20.92517 -20.51102 -19.61493 -17.73934 -17.12224 -16.82667 -16.02251 -15.54870 -15.28234 -14.95780 -14.55712 -14.52019 -14.46347 -14.30764 -13.75457 -13.49080 -13.27117 -13.24416 -13.01736 -12.45986 -12.25006 -12.04265 -11.80188 -11.65230 -11.58129 -11.44906 -11.34765 -11.21456 -11.14841 -10.83309 -10.77130 -10.70285 -10.55659 -10.50031 -10.40221 -9.41887 -9.29096 -8.80598 -8.33228 -8.01495 -7.19330 -6.40535 -3.99631 2.15614 2.41132 3.15648 3.16643 3.19411 3.69431 3.99951 4.23947 4.32397 4.37749 4.63479 4.78023 4.92967 5.03939 5.10813 5.15586 5.18260 5.27186 5.30749 5.38629 5.43446 5.46064 5.51529 5.59637 5.61661 5.64130 5.71681 5.72767 5.80805 5.85221 5.89192 5.92576 5.95913 6.02122 6.13392 6.21829 6.40682 6.69895 6.96359 7.05044 7.11162 7.26827 7.35346 7.38824 7.48081 7.53949 7.86461 8.04390 9.04985 9.76193 10.77583 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.023305 B = 0.002742 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.145476 B =10209.901383 C =10848.234616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.117 3.883 4 C 0.035 3.965 5 N -0.672 5.672 6 C 0.106 3.894 7 C -0.047 4.047 8 C -0.208 4.208 9 C -0.076 4.076 10 C -0.233 4.233 11 C 0.152 3.848 12 O -0.178 6.178 13 C -0.392 4.392 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.864 5.864 17 Si 0.940 3.060 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.165 4.165 22 C -0.151 4.151 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.114 4.114 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.344 0.656 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.270 0.730 38 H 0.116 0.884 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.075 10.296 17.468 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.077 3.923 4 C -0.094 4.094 5 N -0.304 5.304 6 C -0.022 4.022 7 C -0.048 4.048 8 C -0.227 4.227 9 C -0.094 4.094 10 C -0.252 4.252 11 C 0.099 3.901 12 O -0.082 6.082 13 C -0.468 4.468 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.499 5.499 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.196 1.196 21 C -0.185 4.185 22 C -0.189 4.189 23 C -0.157 4.157 24 C -0.161 4.161 25 C -0.151 4.151 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.163 0.837 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.143 0.857 37 H 0.080 0.920 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.153 9.540 17.483 21.162 hybrid contribution 0.703 0.528 -0.974 1.312 sum 7.855 10.068 16.509 20.872 Atomic orbital electron populations 1.22750 0.81544 1.02316 1.00140 1.87988 1.19473 1.25915 1.94653 1.22143 0.93691 0.83926 0.92565 1.22617 1.01380 0.95090 0.90333 1.60397 1.25458 1.44611 0.99938 1.20812 1.00635 0.93027 0.87718 1.19126 0.93920 0.97003 0.94736 1.20405 0.97151 1.05695 0.99455 1.20681 0.97844 0.95603 0.95276 1.21178 0.95118 1.05033 1.03884 1.19356 0.89168 0.89162 0.92439 1.83981 1.39535 1.50112 1.34545 1.21265 1.01151 1.29077 0.95302 0.89204 1.25272 0.94757 0.97036 0.99426 1.70029 1.05127 1.36213 1.38497 0.85798 0.78238 0.79112 0.80367 1.19520 1.20301 1.19559 1.20004 1.00664 1.00669 0.97126 1.22990 0.99156 1.00632 0.96087 1.22441 0.94247 1.01787 0.97269 1.22358 0.98054 1.00555 0.95120 1.22150 0.92352 1.02623 0.98021 0.92935 0.90028 0.94701 0.94638 0.90714 0.83664 0.95042 0.90663 0.88159 0.87605 0.85684 0.92022 0.86593 0.90912 0.90720 0.91147 0.91646 0.91333 0.91665 0.89907 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.15 101.05 1.03 1.35 16 2 O -0.36 -4.74 10.13 -35.23 -0.36 -5.10 16 3 C 0.12 1.23 0.77 -89.50 -0.07 1.16 16 4 C 0.04 0.39 3.82 -3.82 -0.01 0.38 16 5 N -0.67 -9.17 6.36 -115.05 -0.73 -9.90 16 6 C 0.11 1.54 5.81 -4.97 -0.03 1.51 16 7 C -0.05 -0.86 5.39 -104.65 -0.56 -1.42 16 8 C -0.21 -3.63 9.70 -39.54 -0.38 -4.01 16 9 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 10 C -0.23 -5.18 9.17 -39.39 -0.36 -5.54 16 11 C 0.15 3.77 6.65 -39.11 -0.26 3.51 16 12 O -0.18 -5.20 9.76 0.07 0.00 -5.19 16 13 C -0.39 -11.14 9.49 30.89 0.29 -10.85 16 14 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 15 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 16 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16 17 Si 0.94 20.80 29.55 -169.99 -5.02 15.78 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 21 C -0.16 -3.60 9.65 -39.40 -0.38 -3.98 16 22 C -0.15 -1.29 5.88 -25.03 -0.15 -1.44 16 23 C -0.12 -0.93 6.91 -24.70 -0.17 -1.10 16 24 C -0.12 -0.96 6.83 -25.07 -0.17 -1.13 16 25 C -0.11 -1.11 5.69 -25.62 -0.15 -1.26 16 26 H 0.05 0.65 6.78 -51.93 -0.35 0.30 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.03 0.32 6.20 -51.92 -0.32 0.00 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.83 6.79 -51.93 -0.35 0.47 16 31 H 0.34 4.65 7.08 -39.29 -0.28 4.38 16 32 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 34 H 0.10 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 38 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 39 H 0.07 0.55 7.85 -51.93 -0.41 0.15 16 40 H 0.07 0.64 6.14 -51.92 -0.32 0.32 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.90 7.96 -51.93 -0.41 0.49 16 46 H 0.07 0.66 6.71 -51.93 -0.35 0.31 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -31.26 366.07 -8.85 -40.11 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -7.14 Total: 7.36 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -1.87 Total: -23.62 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.03 Total: -34.84 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.36 Total: -10.29 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.26 -8.85 -40.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380318114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.025 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds