Wall clock time and date at job start Tue Mar 31 2020 10:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00241 * 2 1 4 4 C 1.53003 * 110.01784 * 304.21481 * 3 2 1 5 5 N 1.46897 * 109.46775 * 301.88180 * 4 3 2 6 6 C 1.46902 * 110.99975 * 183.81025 * 5 4 3 7 7 C 1.50704 * 109.46919 * 179.97438 * 6 5 4 8 8 C 1.38319 * 119.96750 * 269.72286 * 7 6 5 9 9 C 1.38281 * 120.14266 * 179.77097 * 8 7 6 10 10 C 1.38130 * 120.06198 * 0.51090 * 9 8 7 11 11 C 1.38859 * 119.93155 * 359.74551 * 10 9 8 12 12 O 1.35747 * 120.06518 * 179.97438 * 11 10 9 13 13 C 1.34825 * 117.00165 * 354.71319 * 12 11 10 14 14 H 1.08001 * 120.00566 * 5.12823 * 13 12 11 15 15 C 1.38656 * 119.99748 * 185.12787 * 13 12 11 16 16 N 1.31556 * 120.00568 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99713 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47318 * 59.99824 * 17 15 13 19 19 H 1.48501 * 109.47060 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46885 * 299.99430 * 17 15 13 21 21 C 1.38077 * 119.96310 * 90.00838 * 7 6 5 22 22 C 1.54270 * 110.03414 * 65.60226 * 3 2 1 23 23 C 1.54965 * 104.16014 * 95.75319 * 22 3 2 24 24 C 1.54892 * 102.77364 * 37.89134 * 23 22 3 25 25 C 1.53871 * 110.03810 * 182.82025 * 3 2 1 26 26 H 1.09002 * 109.47387 * 65.82669 * 1 2 3 27 27 H 1.09001 * 109.47125 * 185.83275 * 1 2 3 28 28 H 1.09007 * 109.47174 * 305.83100 * 1 2 3 29 29 H 1.09002 * 109.47604 * 181.88229 * 4 3 2 30 30 H 1.09001 * 109.47384 * 61.87721 * 4 3 2 31 31 H 1.00897 * 111.00201 * 307.76969 * 5 4 3 32 32 H 1.09005 * 109.46768 * 60.00235 * 6 5 4 33 33 H 1.08999 * 109.47509 * 300.00220 * 6 5 4 34 34 H 1.08007 * 119.92924 * 0.02562 * 8 7 6 35 35 H 1.07997 * 119.97356 * 180.26035 * 9 8 7 36 36 H 1.07999 * 120.02965 * 179.76897 * 10 9 8 37 37 H 0.96994 * 120.00126 * 180.02562 * 16 15 13 38 38 H 1.07996 * 120.03386 * 359.94804 * 21 7 6 39 39 H 1.09003 * 110.49300 * 214.40810 * 22 3 2 40 40 H 1.09008 * 110.48453 * 337.04814 * 22 3 2 41 41 H 1.08993 * 110.72114 * 279.57347 * 23 22 3 42 42 H 1.08998 * 110.76229 * 156.22199 * 23 22 3 43 43 H 1.08998 * 110.48582 * 203.39927 * 24 23 22 44 44 H 1.09007 * 110.48335 * 80.75987 * 24 23 22 45 45 H 1.09003 * 110.03178 * 359.95050 * 25 3 2 46 46 H 1.09001 * 110.03532 * 121.37620 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4848 2.1127 -1.1888 5 7 1.7969 1.4048 -2.4375 6 6 1.3871 2.1942 -3.6067 7 6 1.7231 1.4378 -4.8662 8 6 2.9533 1.6172 -5.4725 9 6 3.2672 0.9215 -6.6256 10 6 2.3483 0.0529 -7.1814 11 6 1.1104 -0.1254 -6.5781 12 8 0.2050 -0.9780 -7.1223 13 6 0.5257 -1.5372 -8.3065 14 1 1.5004 -1.3653 -8.7387 15 6 -0.3961 -2.3330 -8.9696 16 7 -1.5836 -2.5421 -8.4435 17 14 0.0484 -3.1083 -10.6099 18 1 1.2274 -3.9941 -10.4355 19 1 -1.1010 -3.9057 -11.1082 20 1 0.3718 -2.0410 -11.5904 21 6 0.8002 0.5710 -5.4170 22 6 1.6783 2.0317 1.3199 23 6 2.9175 1.7770 2.2148 24 6 4.0912 1.8660 1.2079 25 6 3.5437 1.1997 -0.0711 26 1 -0.3634 0.4208 -0.9375 27 1 -0.3633 -1.0224 0.1044 28 1 -0.3634 0.6016 0.8332 29 1 1.9587 3.0943 -1.1994 30 1 0.4051 2.2314 -1.0986 31 1 2.7771 1.1703 -2.4850 32 1 1.9150 3.1479 -3.6043 33 1 0.3128 2.3734 -3.5657 34 1 3.6719 2.2990 -5.0420 35 1 4.2301 1.0605 -7.0944 36 1 2.5925 -0.4874 -8.0841 37 1 -2.2282 -3.0991 -8.9072 38 1 -0.1616 0.4342 -4.9453 39 1 1.5470 3.0996 1.1453 40 1 0.7840 1.6060 1.7752 41 1 2.8701 0.7861 2.6663 42 1 3.0062 2.5477 2.9805 43 1 4.9570 1.3196 1.5821 44 1 4.3501 2.9071 1.0149 45 1 3.8446 0.1526 -0.1048 46 1 3.9136 1.7234 -0.9526 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380318114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:56 Heat of formation + Delta-G solvation = -74.372815 kcal Electronic energy + Delta-G solvation = -24831.512114 eV Core-core repulsion = 21299.593487 eV Total energy + Delta-G solvation = -3531.918627 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.90245 -40.61485 -38.55917 -36.56572 -36.30188 -34.28459 -32.42781 -30.82642 -29.85140 -29.55979 -27.63425 -27.31655 -26.00809 -24.22385 -23.23057 -22.28343 -21.45588 -20.44379 -19.52967 -18.78777 -17.92649 -16.94996 -16.72314 -16.51282 -16.31539 -16.07519 -15.95120 -15.66967 -15.35827 -15.22148 -14.86109 -14.56593 -14.36825 -14.04936 -13.98815 -13.61424 -13.44325 -12.96867 -12.95581 -12.66879 -12.58393 -12.41760 -12.32961 -12.24824 -12.15371 -12.06128 -11.96828 -11.80241 -11.43735 -11.31023 -11.17247 -10.79755 -10.31179 -9.68100 -9.29744 -8.96830 -8.46180 -6.14957 0.53663 0.75674 1.34386 1.45697 1.51089 2.18280 2.74133 2.90344 3.14942 3.40441 3.53252 3.61521 3.67465 3.93572 4.00043 4.12923 4.24280 4.31713 4.34761 4.41268 4.43184 4.52891 4.57365 4.60393 4.61569 4.65788 4.66929 4.76656 4.81091 4.88203 4.98230 4.99364 5.05455 5.10027 5.11847 5.13232 5.22140 5.31529 5.34111 5.48618 5.67484 5.74267 5.77654 6.02005 6.04482 6.25778 6.36784 6.55389 6.98183 7.80398 8.77195 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.023305 B = 0.002742 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.145476 B =10209.901383 C =10848.234616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.388 6.388 3 C 0.110 3.890 4 C 0.039 3.961 5 N -0.688 5.688 6 C 0.112 3.888 7 C -0.038 4.038 8 C -0.183 4.183 9 C -0.071 4.071 10 C -0.246 4.246 11 C 0.111 3.889 12 O -0.235 6.235 13 C -0.414 4.414 14 H 0.101 0.899 15 C -0.024 4.024 16 N -0.923 5.923 17 Si 1.019 2.981 18 H -0.257 1.257 19 H -0.271 1.271 20 H -0.257 1.257 21 C -0.183 4.183 22 C -0.147 4.147 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.116 4.116 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.345 0.655 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.118 0.882 37 H 0.272 0.728 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.957 12.752 18.401 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.307 6.307 3 C 0.071 3.929 4 C -0.090 4.090 5 N -0.321 5.321 6 C -0.016 4.016 7 C -0.038 4.038 8 C -0.202 4.202 9 C -0.089 4.089 10 C -0.265 4.265 11 C 0.061 3.939 12 O -0.141 6.141 13 C -0.491 4.491 14 H 0.118 0.882 15 C -0.221 4.221 16 N -0.561 5.561 17 Si 0.838 3.162 18 H -0.182 1.182 19 H -0.196 1.196 20 H -0.181 1.181 21 C -0.203 4.203 22 C -0.185 4.185 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.153 4.153 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.165 0.835 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.135 0.865 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.076 12.040 18.455 24.230 hybrid contribution -0.025 -0.017 -1.026 1.026 sum 10.052 12.023 17.429 23.439 Atomic orbital electron populations 1.22753 0.81148 1.02598 1.00188 1.87956 1.20114 1.27837 1.94825 1.22361 0.94042 0.83098 0.93425 1.22647 1.01441 0.95782 0.89122 1.60309 1.25645 1.45541 1.00618 1.20765 1.01012 0.93565 0.86237 1.19573 0.93296 0.95271 0.95695 1.20984 0.97018 1.04288 0.97925 1.21136 0.98506 0.93875 0.95391 1.21310 0.95040 1.06178 1.03993 1.19917 0.90033 0.90089 0.93830 1.83943 1.41814 1.52748 1.35642 1.21790 1.01975 1.29559 0.95730 0.88151 1.26616 0.94430 0.97364 1.03727 1.70186 1.06767 1.38239 1.40898 0.84644 0.78375 0.78360 0.74794 1.18155 1.19596 1.18078 1.20188 1.01345 1.01925 0.96847 1.22980 0.99444 1.01147 0.94942 1.22448 0.93800 1.01862 0.97526 1.22357 0.98083 1.01208 0.93952 1.22182 0.91903 1.01803 0.99437 0.94471 0.90220 0.92546 0.92531 0.91036 0.83517 0.91960 0.91038 0.83463 0.83596 0.86455 0.91864 0.88114 0.89424 0.90940 0.92162 0.89895 0.90848 0.90222 0.91791 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.15 113.37 1.15 1.82 16 2 O -0.39 -10.02 10.13 -148.98 -1.51 -11.53 16 3 C 0.11 2.13 0.77 -10.07 -0.01 2.13 16 4 C 0.04 0.77 3.82 86.30 0.33 1.10 16 5 N -0.69 -17.39 6.36 -517.91 -3.30 -20.69 16 6 C 0.11 2.95 5.81 85.56 0.50 3.45 16 7 C -0.04 -1.30 5.39 -19.88 -0.11 -1.41 16 8 C -0.18 -5.65 9.70 22.30 0.22 -5.43 16 9 C -0.07 -2.45 10.04 22.25 0.22 -2.23 16 10 C -0.25 -11.01 9.17 22.39 0.21 -10.80 16 11 C 0.11 5.78 6.65 22.58 0.15 5.93 16 12 O -0.23 -14.68 9.76 -22.65 -0.22 -14.90 16 13 C -0.41 -24.87 9.49 67.92 0.64 -24.22 16 14 H 0.10 5.51 5.20 -2.91 -0.02 5.50 16 15 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 16 N -0.92 -58.13 13.67 21.61 0.30 -57.83 16 17 Si 1.02 43.80 29.55 68.60 2.03 45.82 16 18 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 21 C -0.18 -8.26 9.65 22.39 0.22 -8.04 16 22 C -0.15 -2.15 5.88 31.70 0.19 -1.96 16 23 C -0.12 -1.54 6.91 31.91 0.22 -1.32 16 24 C -0.12 -1.51 6.83 31.67 0.22 -1.30 16 25 C -0.12 -2.02 5.69 31.32 0.18 -1.84 16 26 H 0.04 0.94 6.78 -2.39 -0.02 0.92 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.06 1.00 6.20 -2.38 -0.01 0.99 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 1.46 6.79 -2.39 -0.02 1.44 16 31 H 0.35 8.45 7.08 -89.70 -0.64 7.81 16 32 H 0.06 1.29 8.08 -2.38 -0.02 1.27 16 33 H 0.07 1.95 8.08 -2.39 -0.02 1.93 16 34 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 36 H 0.12 5.33 5.64 -2.91 -0.02 5.31 16 37 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 38 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 39 H 0.09 1.03 7.85 -2.39 -0.02 1.01 16 40 H 0.07 1.09 6.14 -2.38 -0.01 1.08 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.06 1.35 7.96 -2.39 -0.02 1.33 16 46 H 0.08 1.21 6.71 -2.39 -0.02 1.19 16 Total: -1.00 -73.89 366.07 2.43 -71.47 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.34 Total: 32.75 kcal Atomic # 6 Polarization: -49.87 SS G_CDS: 4.78 Total: -45.09 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -3.00 Total: -78.52 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -1.73 Total: -26.43 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -73.89 2.43 -71.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380318114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.906 kcal (2) G-P(sol) polarization free energy of solvation -73.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds