Wall clock time and date at job start Tue Mar 31 2020 11:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35991 * 117.00206 * 2 1 4 4 C 1.38563 * 120.07377 * 359.97438 * 3 2 1 5 5 C 1.38238 * 120.00370 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.14333 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.14864 * 0.02562 * 6 5 4 8 8 C 1.38570 * 119.99585 * 359.71632 * 7 6 5 9 9 O 1.36000 * 120.07263 * 180.27542 * 8 7 6 10 10 C 1.42900 * 116.99741 * 0.28279 * 9 8 7 11 11 C 1.52997 * 109.47020 * 179.97438 * 10 9 8 12 12 N 1.46907 * 109.47380 * 65.01884 * 11 10 9 13 13 C 1.46845 * 110.99983 * 200.01761 * 12 11 10 14 14 C 1.53044 * 109.51935 * 174.15819 * 13 12 11 15 15 C 1.53122 * 109.27758 * 59.17872 * 14 13 12 16 16 C 1.50702 * 109.57233 * 182.40742 * 15 14 13 17 17 H 1.08003 * 119.99881 * 119.71475 * 16 15 14 18 18 C 1.37878 * 119.99904 * 299.71512 * 16 15 14 19 19 N 1.31513 * 120.00388 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00013 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47235 * 59.99714 * 20 18 16 22 22 H 1.48492 * 109.47312 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47010 * 300.00107 * 20 18 16 24 24 C 1.53112 * 109.15895 * 302.34433 * 15 14 13 25 25 C 1.46847 * 111.00017 * 75.80484 * 12 11 10 26 26 H 1.08993 * 109.47183 * 59.99998 * 1 2 3 27 27 H 1.08998 * 109.46922 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47056 * 299.99783 * 1 2 3 29 29 H 1.08004 * 119.99906 * 359.97438 * 4 3 2 30 30 H 1.07993 * 119.93305 * 179.97438 * 5 4 3 31 31 H 1.07997 * 119.92376 * 179.97438 * 6 5 4 32 32 H 1.07994 * 120.00130 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.47073 * 299.99469 * 10 9 8 34 34 H 1.08999 * 109.47649 * 59.99471 * 10 9 8 35 35 H 1.08994 * 109.47534 * 185.01929 * 11 10 9 36 36 H 1.08999 * 109.47254 * 305.01904 * 11 10 9 37 37 H 1.08996 * 109.46309 * 294.17148 * 13 12 11 38 38 H 1.09001 * 109.46200 * 54.14530 * 13 12 11 39 39 H 1.08992 * 109.50499 * 299.23431 * 14 13 12 40 40 H 1.09000 * 109.49977 * 179.11813 * 14 13 12 41 41 H 1.09001 * 109.51952 * 62.24800 * 15 14 13 42 42 H 0.96996 * 120.00569 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.50585 * 297.71160 * 24 15 14 44 44 H 1.09000 * 109.50245 * 177.59773 * 24 15 14 45 45 H 1.09005 * 109.45852 * 305.85764 * 25 12 11 46 46 H 1.08990 * 109.46130 * 65.83378 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3748 -0.0005 5 6 1.9224 3.6057 -0.0011 6 6 3.3030 3.6797 -0.0016 7 6 4.0604 2.5233 -0.0021 8 6 3.4360 1.2862 0.0038 9 8 4.1795 0.1475 0.0089 10 6 5.6003 0.3005 0.0141 11 6 6.2618 -1.0790 0.0201 12 7 5.9510 -1.7766 -1.2349 13 6 6.1424 -3.2256 -1.0929 14 6 5.6723 -3.9307 -2.3673 15 6 6.4747 -3.4055 -3.5610 16 6 5.9769 -4.0524 -4.8278 17 1 5.5737 -3.4428 -5.6230 18 6 6.0361 -5.4224 -4.9717 19 7 6.5275 -6.1646 -4.0036 20 14 5.4197 -6.2241 -6.5422 21 1 6.1952 -5.7081 -7.6988 22 1 5.5930 -7.6958 -6.4477 23 1 3.9813 -5.9056 -6.7290 24 6 6.2969 -1.8878 -3.6573 25 6 6.7489 -1.2419 -2.3457 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2146 2.3196 -0.0014 30 1 1.3343 4.5114 -0.0019 31 1 3.7908 4.6433 -0.0024 32 1 5.1386 2.5839 -0.0030 33 1 5.9100 0.8485 -0.8758 34 1 5.9031 0.8521 0.9041 35 1 7.3415 -0.9639 0.1140 36 1 5.8838 -1.6596 0.8616 37 1 7.1988 -3.4380 -0.9289 38 1 5.5632 -3.5869 -0.2432 39 1 4.6126 -3.7301 -2.5245 40 1 5.8290 -5.0048 -2.2677 41 1 7.5300 -3.6406 -3.4223 42 1 6.5695 -7.1284 -4.1049 43 1 5.2470 -1.6549 -3.8349 44 1 6.8998 -1.5023 -4.4795 45 1 6.6101 -0.1624 -2.4057 46 1 7.8024 -1.4637 -2.1758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397261214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:11 Heat of formation + Delta-G solvation = -48.220616 kcal Electronic energy + Delta-G solvation = -25274.640621 eV Core-core repulsion = 21743.856038 eV Total energy + Delta-G solvation = -3530.784582 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.50015 -38.74106 -37.88379 -36.77737 -34.03239 -31.71747 -30.38335 -30.24652 -29.72435 -28.42709 -27.23998 -25.46669 -23.29802 -22.34101 -22.15005 -21.63273 -20.55710 -18.74276 -18.45296 -17.25854 -16.47510 -16.39713 -16.08057 -15.56035 -15.04180 -14.79159 -14.65325 -14.41536 -14.24872 -14.04308 -13.49196 -12.97331 -12.90085 -12.71075 -12.38298 -12.21583 -12.18823 -11.93902 -11.65115 -11.27491 -11.20552 -11.17398 -11.11463 -10.85522 -10.70104 -10.61408 -10.35985 -10.12994 -9.88063 -9.36247 -8.88185 -8.81885 -8.64753 -8.22793 -7.79044 -7.65753 -5.91185 -3.96144 1.20843 1.39943 3.26992 3.30055 3.37120 3.41186 3.44464 3.67414 4.39751 4.50648 4.68750 4.79046 4.90384 5.03616 5.08073 5.09782 5.20795 5.29757 5.33939 5.37983 5.39547 5.44428 5.53803 5.64747 5.78655 5.89433 5.96297 6.10985 6.15827 6.18461 6.27481 6.39156 6.39603 6.60568 6.68255 6.69526 6.92809 7.11973 7.16888 7.25221 7.51440 7.65921 7.68876 7.78419 7.90144 8.13172 8.23134 8.55488 9.07171 9.67744 11.15044 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017342 B = 0.003254 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.197187 B = 8603.431949 C = 9286.537351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.300 6.300 3 C 0.097 3.903 4 C -0.176 4.176 5 C -0.127 4.127 6 C -0.118 4.118 7 C -0.180 4.180 8 C 0.112 3.888 9 O -0.280 6.280 10 C 0.067 3.933 11 C 0.054 3.946 12 N -0.527 5.527 13 C 0.060 3.940 14 C -0.104 4.104 15 C 0.049 3.951 16 C -0.510 4.510 17 H 0.053 0.947 18 C 0.061 3.939 19 N -0.893 5.893 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.106 4.106 25 C 0.059 3.941 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.051 0.949 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.132 0.868 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.021 0.979 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.092 0.908 41 H 0.019 0.981 42 H 0.259 0.741 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.990 17.723 11.811 22.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.213 6.213 3 C 0.052 3.948 4 C -0.194 4.194 5 C -0.145 4.145 6 C -0.137 4.137 7 C -0.199 4.199 8 C 0.065 3.935 9 O -0.193 6.193 10 C -0.009 4.009 11 C -0.075 4.075 12 N -0.252 5.252 13 C -0.067 4.067 14 C -0.142 4.142 15 C 0.030 3.970 16 C -0.548 4.548 17 H 0.071 0.929 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.718 3.282 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.144 4.144 25 C -0.069 4.069 26 H 0.072 0.928 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.149 0.851 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.150 0.850 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.110 0.890 41 H 0.038 0.962 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -7.413 17.185 11.742 22.094 hybrid contribution 0.443 -0.234 -0.663 0.831 sum -6.970 16.951 11.080 21.417 Atomic orbital electron populations 1.23047 0.78902 1.04048 1.00780 1.86266 1.20677 1.25628 1.88725 1.18324 0.89359 0.85317 1.01841 1.21043 0.99808 0.91646 1.06942 1.20775 0.94550 0.96830 1.02380 1.20819 0.93746 0.97716 1.01387 1.21093 1.00408 0.91221 1.07178 1.18397 0.88551 0.86646 0.99886 1.86347 1.18236 1.26964 1.87750 1.22908 0.78879 0.98693 1.00408 1.22098 0.96957 0.93760 0.94697 1.61936 1.56063 1.04721 1.02517 1.22274 0.97929 0.85917 1.00603 1.21654 0.99135 1.01387 0.92021 1.18669 0.95606 0.88737 0.93945 1.21184 1.40706 0.91692 1.01212 0.92853 1.24961 0.95305 0.97441 0.96293 1.69865 1.46173 1.05186 1.31990 0.86700 0.79423 0.78111 0.83992 1.20420 1.21401 1.20305 1.21663 1.00461 0.99024 0.93209 1.22175 0.94021 0.97798 0.92897 0.92850 0.88161 0.93058 0.85064 0.85942 0.85899 0.84977 0.92052 0.92416 0.93074 0.90186 0.96095 0.92538 0.93709 0.89010 0.96246 0.93099 0.92454 0.93333 0.92752 0.95877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.30 -4.46 10.28 -34.21 -0.35 -4.82 16 3 C 0.10 1.38 6.70 -39.12 -0.26 1.11 16 4 C -0.18 -1.95 9.04 -39.46 -0.36 -2.30 16 5 C -0.13 -1.26 10.04 -39.57 -0.40 -1.66 16 6 C -0.12 -1.20 10.04 -39.57 -0.40 -1.60 16 7 C -0.18 -2.13 9.04 -39.46 -0.36 -2.49 16 8 C 0.11 1.64 6.70 -39.12 -0.26 1.38 16 9 O -0.28 -4.59 9.87 -34.24 -0.34 -4.93 16 10 C 0.07 0.89 4.93 37.16 0.18 1.07 16 11 C 0.05 0.78 5.39 -3.82 -0.02 0.76 16 12 N -0.53 -9.85 4.53 -234.67 -1.06 -10.91 16 13 C 0.06 1.22 5.43 -3.83 -0.02 1.20 16 14 C -0.10 -2.55 5.12 -26.65 -0.14 -2.68 16 15 C 0.05 1.25 2.16 -91.65 -0.20 1.06 16 16 C -0.51 -14.38 8.56 -34.44 -0.29 -14.68 16 17 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.71 5.31 -17.82 -0.09 1.62 16 19 N -0.89 -25.89 11.37 55.43 0.63 -25.26 16 20 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.11 -2.32 5.32 -26.66 -0.14 -2.46 16 25 C 0.06 1.09 5.29 -3.84 -0.02 1.07 16 26 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 29 H 0.13 1.12 6.30 -52.48 -0.33 0.79 16 30 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 31 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.13 1.32 6.30 -52.49 -0.33 0.99 16 33 H 0.06 0.79 6.21 -51.93 -0.32 0.47 16 34 H 0.06 0.60 7.68 -51.93 -0.40 0.21 16 35 H 0.05 0.67 8.00 -51.93 -0.42 0.25 16 36 H 0.08 1.15 7.79 -51.93 -0.40 0.75 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 39 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.09 2.48 6.18 -51.93 -0.32 2.16 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 0.89 6.65 -51.93 -0.35 0.55 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -31.86 363.31 -9.88 -41.74 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.42 Total: -0.68 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -1.78 Total: -17.34 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.43 Total: -36.17 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.69 Total: -9.74 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.86 -9.88 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397261214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.483 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds