Wall clock time and date at job start Tue Mar 31 2020 11:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35991 * 117.00206 * 2 1 4 4 C 1.38563 * 120.07377 * 359.97438 * 3 2 1 5 5 C 1.38238 * 120.00370 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.14333 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.14864 * 0.02562 * 6 5 4 8 8 C 1.38570 * 119.99585 * 359.71632 * 7 6 5 9 9 O 1.36000 * 120.07263 * 180.27542 * 8 7 6 10 10 C 1.42900 * 116.99741 * 0.28279 * 9 8 7 11 11 C 1.52997 * 109.47020 * 179.97438 * 10 9 8 12 12 N 1.46907 * 109.47380 * 65.01884 * 11 10 9 13 13 C 1.46845 * 110.99983 * 200.01761 * 12 11 10 14 14 C 1.53044 * 109.51935 * 174.15819 * 13 12 11 15 15 C 1.53122 * 109.27758 * 59.17872 * 14 13 12 16 16 C 1.50702 * 109.57233 * 182.40742 * 15 14 13 17 17 H 1.08003 * 119.99881 * 119.71475 * 16 15 14 18 18 C 1.37878 * 119.99904 * 299.71512 * 16 15 14 19 19 N 1.31513 * 120.00388 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00013 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47235 * 59.99714 * 20 18 16 22 22 H 1.48492 * 109.47312 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47010 * 300.00107 * 20 18 16 24 24 C 1.53112 * 109.15895 * 302.34433 * 15 14 13 25 25 C 1.46847 * 111.00017 * 75.80484 * 12 11 10 26 26 H 1.08993 * 109.47183 * 59.99998 * 1 2 3 27 27 H 1.08998 * 109.46922 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47056 * 299.99783 * 1 2 3 29 29 H 1.08004 * 119.99906 * 359.97438 * 4 3 2 30 30 H 1.07993 * 119.93305 * 179.97438 * 5 4 3 31 31 H 1.07997 * 119.92376 * 179.97438 * 6 5 4 32 32 H 1.07994 * 120.00130 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.47073 * 299.99469 * 10 9 8 34 34 H 1.08999 * 109.47649 * 59.99471 * 10 9 8 35 35 H 1.08994 * 109.47534 * 185.01929 * 11 10 9 36 36 H 1.08999 * 109.47254 * 305.01904 * 11 10 9 37 37 H 1.08996 * 109.46309 * 294.17148 * 13 12 11 38 38 H 1.09001 * 109.46200 * 54.14530 * 13 12 11 39 39 H 1.08992 * 109.50499 * 299.23431 * 14 13 12 40 40 H 1.09000 * 109.49977 * 179.11813 * 14 13 12 41 41 H 1.09001 * 109.51952 * 62.24800 * 15 14 13 42 42 H 0.96996 * 120.00569 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.50585 * 297.71160 * 24 15 14 44 44 H 1.09000 * 109.50245 * 177.59773 * 24 15 14 45 45 H 1.09005 * 109.45852 * 305.85764 * 25 12 11 46 46 H 1.08990 * 109.46130 * 65.83378 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3748 -0.0005 5 6 1.9224 3.6057 -0.0011 6 6 3.3030 3.6797 -0.0016 7 6 4.0604 2.5233 -0.0021 8 6 3.4360 1.2862 0.0038 9 8 4.1795 0.1475 0.0089 10 6 5.6003 0.3005 0.0141 11 6 6.2618 -1.0790 0.0201 12 7 5.9510 -1.7766 -1.2349 13 6 6.1424 -3.2256 -1.0929 14 6 5.6723 -3.9307 -2.3673 15 6 6.4747 -3.4055 -3.5610 16 6 5.9769 -4.0524 -4.8278 17 1 5.5737 -3.4428 -5.6230 18 6 6.0361 -5.4224 -4.9717 19 7 6.5275 -6.1646 -4.0036 20 14 5.4197 -6.2241 -6.5422 21 1 6.1952 -5.7081 -7.6988 22 1 5.5930 -7.6958 -6.4477 23 1 3.9813 -5.9056 -6.7290 24 6 6.2969 -1.8878 -3.6573 25 6 6.7489 -1.2419 -2.3457 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2146 2.3196 -0.0014 30 1 1.3343 4.5114 -0.0019 31 1 3.7908 4.6433 -0.0024 32 1 5.1386 2.5839 -0.0030 33 1 5.9100 0.8485 -0.8758 34 1 5.9031 0.8521 0.9041 35 1 7.3415 -0.9639 0.1140 36 1 5.8838 -1.6596 0.8616 37 1 7.1988 -3.4380 -0.9289 38 1 5.5632 -3.5869 -0.2432 39 1 4.6126 -3.7301 -2.5245 40 1 5.8290 -5.0048 -2.2677 41 1 7.5300 -3.6406 -3.4223 42 1 6.5695 -7.1284 -4.1049 43 1 5.2470 -1.6549 -3.8349 44 1 6.8998 -1.5023 -4.4795 45 1 6.6101 -0.1624 -2.4057 46 1 7.8024 -1.4637 -2.1758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397261214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:10 Heat of formation + Delta-G solvation = -67.386289 kcal Electronic energy + Delta-G solvation = -25275.471707 eV Core-core repulsion = 21743.856038 eV Total energy + Delta-G solvation = -3531.615668 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.40189 -40.02093 -39.16192 -37.70066 -35.83395 -33.53918 -31.66056 -31.21275 -31.10823 -29.73041 -28.02238 -27.31582 -24.66500 -23.73206 -23.20965 -23.12076 -21.76664 -20.37470 -19.56524 -18.46555 -18.16617 -17.37832 -17.28609 -16.72785 -16.48680 -15.99794 -15.64605 -15.56331 -15.51429 -15.32524 -14.88221 -14.68733 -14.35710 -14.13090 -13.72038 -13.48998 -13.36215 -13.01380 -12.94797 -12.81480 -12.75203 -12.57700 -12.28306 -12.11657 -11.98153 -11.96044 -11.91672 -11.69169 -11.65234 -11.36330 -10.77969 -10.66709 -10.36946 -9.65417 -9.11370 -8.70743 -8.07833 -6.21242 0.37553 0.54322 1.40304 1.42320 1.49787 2.36417 2.43758 2.46620 2.83648 3.02080 3.18696 3.84727 3.97935 4.06622 4.10738 4.18019 4.22212 4.32156 4.35052 4.37947 4.40810 4.47241 4.51734 4.55257 4.56495 4.64085 4.72137 4.73614 4.82676 4.87292 4.90236 4.96647 5.10425 5.23186 5.29872 5.33604 5.40102 5.56272 5.59033 5.62508 5.84322 6.00326 6.02804 6.22973 6.30685 6.38941 6.41403 6.77429 6.89625 7.46079 8.96652 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017342 B = 0.003254 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.197187 B = 8603.431949 C = 9286.537351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.066 3.934 4 C -0.176 4.176 5 C -0.124 4.124 6 C -0.119 4.119 7 C -0.182 4.182 8 C 0.076 3.924 9 O -0.315 6.315 10 C 0.068 3.932 11 C 0.053 3.947 12 N -0.543 5.543 13 C 0.072 3.928 14 C -0.094 4.094 15 C 0.047 3.953 16 C -0.537 4.537 17 H 0.048 0.952 18 C 0.012 3.988 19 N -0.917 5.917 20 Si 0.953 3.047 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.274 1.274 24 C -0.099 4.099 25 C 0.067 3.933 26 H 0.063 0.937 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.022 0.978 38 H 0.067 0.933 39 H 0.022 0.978 40 H 0.062 0.938 41 H -0.008 1.008 42 H 0.260 0.740 43 H 0.041 0.959 44 H 0.054 0.946 45 H 0.083 0.917 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.300 20.372 12.265 24.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.021 3.979 4 C -0.195 4.195 5 C -0.142 4.142 6 C -0.137 4.137 7 C -0.201 4.201 8 C 0.030 3.970 9 O -0.229 6.229 10 C -0.007 4.007 11 C -0.074 4.074 12 N -0.268 5.268 13 C -0.056 4.056 14 C -0.133 4.133 15 C 0.028 3.972 16 C -0.575 4.575 17 H 0.067 0.933 18 C -0.186 4.186 19 N -0.557 5.557 20 Si 0.779 3.221 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.199 1.199 24 C -0.137 4.137 25 C -0.061 4.061 26 H 0.082 0.918 27 H 0.124 0.876 28 H 0.089 0.911 29 H 0.170 0.830 30 H 0.172 0.828 31 H 0.171 0.829 32 H 0.166 0.834 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.040 0.960 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.080 0.920 41 H 0.010 0.990 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.726 19.859 12.204 24.557 hybrid contribution 0.487 -0.991 -0.785 1.355 sum -7.239 18.868 11.419 23.212 Atomic orbital electron populations 1.23273 0.76943 1.04995 1.02182 1.86192 1.23019 1.26888 1.89250 1.18755 0.89828 0.85956 1.03389 1.21367 1.00887 0.91215 1.06011 1.21231 0.94966 0.97459 1.00564 1.21249 0.94041 0.98431 0.99965 1.21364 1.01451 0.90746 1.06494 1.18806 0.88967 0.87137 1.02085 1.86280 1.19483 1.28595 1.88579 1.22975 0.77925 0.97799 1.02006 1.22217 0.98645 0.94218 0.92360 1.61847 1.56758 1.03607 1.04585 1.22007 0.97820 0.87327 0.98410 1.21409 0.97618 1.00127 0.94117 1.18628 0.93728 0.91331 0.93485 1.21568 1.41205 0.92412 1.02273 0.93341 1.25744 0.95412 0.97985 0.99471 1.70002 1.46717 1.05348 1.33598 0.85689 0.78917 0.77263 0.80250 1.19550 1.20734 1.19919 1.21527 0.99718 0.96655 0.95836 1.22078 0.94060 0.98964 0.90990 0.91837 0.87596 0.91122 0.82967 0.82782 0.82882 0.83370 0.91710 0.89346 0.90662 0.90168 0.96019 0.91481 0.95934 0.91985 0.98977 0.93043 0.93992 0.92738 0.89895 0.95278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.34 -10.36 10.28 -79.58 -0.82 -11.17 16 3 C 0.07 1.85 6.70 22.57 0.15 2.00 16 4 C -0.18 -3.60 9.04 22.35 0.20 -3.39 16 5 C -0.12 -2.07 10.04 22.28 0.22 -1.84 16 6 C -0.12 -2.03 10.04 22.28 0.22 -1.81 16 7 C -0.18 -3.92 9.04 22.35 0.20 -3.72 16 8 C 0.08 2.18 6.70 22.57 0.15 2.33 16 9 O -0.32 -10.25 9.87 -79.69 -0.79 -11.04 16 10 C 0.07 1.68 4.93 71.98 0.36 2.03 16 11 C 0.05 1.47 5.39 86.30 0.47 1.93 16 12 N -0.54 -19.94 4.53 -896.37 -4.06 -24.01 16 13 C 0.07 2.97 5.43 86.33 0.47 3.44 16 14 C -0.09 -4.82 5.12 30.65 0.16 -4.67 16 15 C 0.05 2.48 2.16 -11.46 -0.02 2.46 16 16 C -0.54 -31.19 8.56 25.60 0.22 -30.97 16 17 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 18 C 0.01 0.71 5.31 84.66 0.45 1.16 16 19 N -0.92 -54.66 11.37 21.45 0.24 -54.42 16 20 Si 0.95 45.23 29.54 68.60 2.03 47.25 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 24 C -0.10 -4.41 5.32 30.64 0.16 -4.25 16 25 C 0.07 2.40 5.29 86.32 0.46 2.86 16 26 H 0.06 1.03 7.66 -2.39 -0.02 1.02 16 27 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 29 H 0.15 2.27 6.30 -2.91 -0.02 2.25 16 30 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 31 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.15 2.54 6.30 -2.91 -0.02 2.52 16 33 H 0.06 1.52 6.21 -2.39 -0.01 1.50 16 34 H 0.09 1.60 7.68 -2.39 -0.02 1.59 16 35 H 0.08 1.74 8.00 -2.39 -0.02 1.72 16 36 H 0.08 2.21 7.79 -2.39 -0.02 2.19 16 37 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 39 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 3.51 6.18 -2.39 -0.01 3.50 16 41 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 42 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 44 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.08 2.54 6.65 -2.38 -0.02 2.52 16 46 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -72.06 363.31 2.53 -69.53 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.95 Total: 14.79 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 4.98 Total: -30.94 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -3.82 Total: -78.42 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -1.60 Total: -22.21 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -72.06 2.53 -69.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397261214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.140 kcal (2) G-P(sol) polarization free energy of solvation -72.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds