Wall clock time and date at job start Tue Mar 31 2020 11:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35995 * 117.00373 * 2 1 4 4 C 1.38561 * 120.06921 * 359.97408 * 3 2 1 5 5 C 1.38247 * 119.99676 * 180.02562 * 4 3 2 6 6 C 1.38254 * 120.14245 * 359.74288 * 5 4 3 7 7 C 1.50703 * 119.92367 * 180.25243 * 6 5 4 8 8 N 1.46898 * 109.47629 * 270.25632 * 7 6 5 9 9 C 1.46848 * 111.00109 * 294.21475 * 8 7 6 10 10 C 1.53034 * 109.52734 * 174.15781 * 9 8 7 11 11 C 1.53124 * 109.27697 * 59.17346 * 10 9 8 12 12 C 1.50698 * 109.57343 * 182.40907 * 11 10 9 13 13 H 1.08001 * 119.99677 * 119.71363 * 12 11 10 14 14 C 1.37871 * 120.00126 * 299.72172 * 12 11 10 15 15 N 1.31514 * 119.99858 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00179 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.46816 * 90.00367 * 16 14 12 18 18 H 1.48502 * 109.46914 * 210.00288 * 16 14 12 19 19 H 1.48501 * 109.47111 * 330.00358 * 16 14 12 20 20 C 1.53112 * 109.16231 * 302.35103 * 11 10 9 21 21 C 1.46842 * 111.00235 * 169.99839 * 8 7 6 22 22 C 1.38238 * 120.15025 * 0.51541 * 6 5 4 23 23 C 1.38570 * 119.99772 * 359.48447 * 22 6 5 24 24 O 1.35986 * 120.07459 * 180.23600 * 23 22 6 25 25 C 1.42902 * 116.99897 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47311 * 300.00792 * 1 2 3 27 27 H 1.09007 * 109.47007 * 59.99750 * 1 2 3 28 28 H 1.09003 * 109.47911 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00615 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.92711 * 180.02562 * 5 4 3 31 31 H 1.08997 * 109.47116 * 30.25966 * 7 6 5 32 32 H 1.09006 * 109.47066 * 150.25630 * 7 6 5 33 33 H 1.09004 * 109.46196 * 294.17384 * 9 8 7 34 34 H 1.09006 * 109.46175 * 54.13765 * 9 8 7 35 35 H 1.09001 * 109.49953 * 299.23876 * 10 9 8 36 36 H 1.08995 * 109.53603 * 179.13788 * 10 9 8 37 37 H 1.08996 * 109.51897 * 62.25354 * 11 10 9 38 38 H 0.97004 * 120.00299 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.50479 * 297.71216 * 20 11 10 40 40 H 1.08996 * 109.53620 * 177.61462 * 20 11 10 41 41 H 1.08995 * 109.46821 * 305.85821 * 21 8 7 42 42 H 1.09008 * 109.45783 * 65.83973 * 21 8 7 43 43 H 1.08002 * 120.00519 * 179.76978 * 22 6 5 44 44 H 1.09004 * 109.47171 * 180.02562 * 25 24 23 45 45 H 1.08995 * 109.47254 * 300.00109 * 25 24 23 46 46 H 1.08999 * 109.47402 * 60.00178 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3747 -0.0005 5 6 1.9226 3.6057 -0.0011 6 6 3.3031 3.6796 0.0043 7 6 3.9839 5.0241 0.0094 8 7 4.2049 5.4665 -1.3738 9 6 5.1600 4.5880 -2.0611 10 6 5.2549 4.9891 -3.5349 11 6 5.7117 6.4473 -3.6335 12 6 5.7506 6.8674 -5.0802 13 1 5.1343 7.6860 -5.4215 14 6 6.5727 6.2066 -5.9681 15 7 6.6069 6.5736 -7.2306 16 14 7.6390 4.7909 -5.3778 17 1 6.8876 3.5169 -5.5097 18 1 8.8737 4.7249 -6.2001 19 1 8.0031 5.0057 -3.9542 20 6 4.7264 7.3354 -2.8690 21 6 4.6467 6.8663 -1.4144 22 6 4.0604 2.5232 -0.0005 23 6 3.4360 1.2861 0.0000 24 8 4.1794 0.1475 0.0001 25 6 5.6002 0.3004 -0.0009 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 0.2147 2.3197 -0.0014 30 1 1.3344 4.5115 -0.0011 31 1 3.3542 5.7482 0.5263 32 1 4.9422 4.9442 0.5228 33 1 6.1408 4.6826 -1.5951 34 1 4.8211 3.5546 -1.9870 35 1 4.2774 4.8814 -4.0049 36 1 5.9752 4.3470 -4.0417 37 1 6.7059 6.5477 -3.1982 38 1 7.1856 6.1090 -7.8553 39 1 3.7405 7.2647 -3.3286 40 1 5.0687 8.3698 -2.8995 41 1 3.9352 7.4877 -0.8708 42 1 5.6301 6.9502 -0.9516 43 1 5.1387 2.5837 -0.0001 44 1 6.0715 -0.6825 -0.0012 45 1 5.9059 0.8497 -0.8914 46 1 5.9072 0.8506 0.8885 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397279839.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:15 Heat of formation + Delta-G solvation = -41.984335 kcal Electronic energy + Delta-G solvation = -25681.291007 eV Core-core repulsion = 22150.776850 eV Total energy + Delta-G solvation = -3530.514157 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.69169 -38.75888 -38.48099 -36.94696 -34.06375 -31.94889 -30.59913 -30.40167 -29.97347 -27.94988 -27.37538 -26.23989 -24.13726 -22.72099 -22.14082 -21.61656 -20.81111 -18.82344 -18.47263 -17.13511 -16.77928 -16.66602 -16.21168 -15.70521 -15.34887 -14.88983 -14.74347 -14.59523 -14.43566 -14.27534 -13.48980 -13.36322 -13.02372 -12.91757 -12.70608 -12.40315 -12.33710 -11.99050 -11.88947 -11.67571 -11.51310 -11.30623 -11.19394 -11.10647 -10.88661 -10.80833 -10.53440 -10.06018 -9.88894 -9.60110 -9.05803 -8.92244 -8.74579 -8.48519 -7.97958 -7.78730 -6.03922 -4.01927 1.20940 1.38747 3.15141 3.18449 3.28325 3.37211 3.39853 3.59422 4.38725 4.43497 4.66082 4.73397 4.85138 4.95828 4.98321 5.04759 5.07744 5.17354 5.27282 5.27695 5.34281 5.38976 5.43029 5.50293 5.57150 5.65184 5.73901 5.87970 5.92024 6.05468 6.12863 6.19274 6.20980 6.37925 6.46334 6.57455 6.61691 6.76075 6.85854 6.93929 6.96086 7.24947 7.41569 7.48949 7.53842 7.66537 7.82290 8.57209 9.00932 9.59344 11.09718 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016187 B = 0.003925 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.408393 B = 7132.341650 C = 7767.861080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.093 3.907 4 C -0.173 4.173 5 C -0.094 4.094 6 C -0.066 4.066 7 C 0.094 3.906 8 N -0.527 5.527 9 C 0.052 3.948 10 C -0.115 4.115 11 C 0.013 3.987 12 C -0.509 4.509 13 H 0.073 0.927 14 C 0.068 3.932 15 N -0.903 5.903 16 Si 0.886 3.114 17 H -0.279 1.279 18 H -0.298 1.298 19 H -0.268 1.268 20 C -0.096 4.096 21 C 0.057 3.943 22 C -0.164 4.164 23 C 0.097 3.903 24 O -0.309 6.309 25 C 0.026 3.974 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.022 0.978 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.021 0.979 38 H 0.263 0.737 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.026 0.974 43 H 0.132 0.868 44 H 0.099 0.901 45 H 0.056 0.944 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.691 -10.579 19.129 23.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.048 3.952 4 C -0.191 4.191 5 C -0.113 4.113 6 C -0.067 4.067 7 C -0.033 4.033 8 N -0.252 5.252 9 C -0.075 4.075 10 C -0.153 4.153 11 C -0.006 4.006 12 C -0.547 4.547 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.542 5.542 16 Si 0.717 3.283 17 H -0.206 1.206 18 H -0.226 1.226 19 H -0.193 1.193 20 C -0.134 4.134 21 C -0.070 4.070 22 C -0.184 4.184 23 C 0.052 3.948 24 O -0.222 6.222 25 C -0.070 4.070 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.151 0.849 30 H 0.146 0.854 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.150 0.850 44 H 0.117 0.883 45 H 0.075 0.925 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.021 -11.015 18.700 23.503 hybrid contribution 1.399 -0.526 0.486 1.572 sum -7.622 -11.540 19.186 23.651 Atomic orbital electron populations 1.23037 0.78809 1.03741 1.01210 1.86152 1.20821 1.26104 1.89239 1.18217 0.89068 0.85162 1.02746 1.21031 0.99783 0.91483 1.06841 1.20713 0.93750 0.96978 0.99820 1.19482 0.93477 0.94143 0.99586 1.20993 0.98443 0.93059 0.90818 1.61948 1.47516 1.02845 1.12892 1.22274 0.92319 0.96294 0.96617 1.22002 1.01564 0.99508 0.92207 1.19180 0.94076 0.90681 0.96620 1.21068 1.24766 1.17769 0.91095 0.90860 1.25019 0.96503 0.97002 0.94740 1.69902 1.39534 1.41742 1.03010 0.86863 0.79648 0.83130 0.78687 1.20581 1.22594 1.19295 1.21490 1.00927 0.98851 0.92092 1.22202 0.97529 0.87983 0.99316 1.20988 1.00222 0.90745 1.06400 1.18174 0.88229 0.85961 1.02448 1.86142 1.18586 1.28315 1.89187 1.23067 0.78730 1.03764 1.01397 0.92860 0.92668 0.88426 0.84879 0.85361 0.90013 0.94534 0.95940 0.91640 0.91304 0.93529 0.96143 0.92765 0.91770 0.92346 0.91744 0.95616 0.85043 0.88263 0.92519 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.00 10.28 -34.23 -0.35 -4.35 16 3 C 0.09 1.26 6.70 -39.12 -0.26 1.00 16 4 C -0.17 -2.02 9.04 -39.46 -0.36 -2.38 16 5 C -0.09 -1.14 9.69 -39.57 -0.38 -1.53 16 6 C -0.07 -0.87 4.89 -104.61 -0.51 -1.38 16 7 C 0.09 1.24 5.12 -4.98 -0.03 1.21 16 8 N -0.53 -8.62 4.65 -236.11 -1.10 -9.71 16 9 C 0.05 0.95 5.15 -3.83 -0.02 0.93 16 10 C -0.12 -2.54 4.84 -26.65 -0.13 -2.67 16 11 C 0.01 0.31 1.75 -91.65 -0.16 0.15 16 12 C -0.51 -14.39 9.15 -34.44 -0.32 -14.70 16 13 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 14 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 15 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 16 Si 0.89 22.25 24.37 -169.99 -4.14 18.10 16 17 H -0.28 -6.85 6.89 56.52 0.39 -6.46 16 18 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 19 H -0.27 -6.42 6.53 56.52 0.37 -6.05 16 20 C -0.10 -1.90 5.32 -26.65 -0.14 -2.04 16 21 C 0.06 0.93 5.46 -3.84 -0.02 0.91 16 22 C -0.16 -2.19 6.86 -39.46 -0.27 -2.46 16 23 C 0.10 1.37 6.70 -39.12 -0.26 1.11 16 24 O -0.31 -4.27 10.28 -34.20 -0.35 -4.62 16 25 C 0.03 0.26 9.81 101.05 0.99 1.25 16 26 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 27 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.13 1.20 6.30 -52.49 -0.33 0.86 16 30 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 31 H 0.08 0.93 7.93 -51.93 -0.41 0.52 16 32 H 0.04 0.46 8.07 -51.93 -0.42 0.04 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 1.13 5.75 -51.93 -0.30 0.84 16 35 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.05 1.08 3.38 -51.93 -0.18 0.91 16 37 H 0.02 0.50 7.19 -51.93 -0.37 0.13 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.06 0.90 8.01 -51.93 -0.42 0.48 16 42 H 0.03 0.41 8.14 -51.92 -0.42 -0.01 16 43 H 0.13 1.60 6.19 -52.49 -0.32 1.28 16 44 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 46 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -32.83 354.62 -8.12 -40.96 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -7.32 Total: -1.05 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -0.97 Total: -17.47 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.32 Total: -36.90 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.70 Total: -8.98 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.10 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.83 -8.12 -40.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397279839.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.029 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds