Wall clock time and date at job start Tue Mar 31 2020 10:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35911 * 117.00167 * 2 1 4 4 C 1.38749 * 120.05273 * 0.21128 * 3 2 1 5 5 C 1.38123 * 119.94338 * 180.27414 * 4 3 2 6 6 C 1.38286 * 120.05428 * 359.76341 * 5 4 3 7 7 C 1.38240 * 120.11196 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.97188 * 179.97438 * 7 6 5 9 9 H 1.09007 * 109.47075 * 205.01732 * 8 7 6 10 10 O 1.42896 * 109.47385 * 325.01983 * 8 7 6 11 11 C 1.52998 * 109.47315 * 85.02066 * 8 7 6 12 12 N 1.46905 * 109.47312 * 178.44689 * 11 8 7 13 13 C 1.46847 * 110.99819 * 164.04402 * 12 11 8 14 14 C 1.53035 * 109.52127 * 185.84057 * 13 12 11 15 15 C 1.53122 * 109.28024 * 300.81949 * 14 13 12 16 16 C 1.53116 * 109.15695 * 57.65483 * 15 14 13 17 17 H 1.09004 * 109.50103 * 62.28730 * 16 15 14 18 18 C 1.50697 * 109.50422 * 182.40236 * 16 15 14 19 19 H 1.07999 * 120.00102 * 119.99887 * 18 16 15 20 20 C 1.37881 * 120.00174 * 300.00563 * 18 16 15 21 21 N 1.31516 * 119.99677 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 120.00218 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47241 * 59.99569 * 22 20 18 24 24 H 1.48496 * 109.47460 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46788 * 299.99940 * 22 20 18 26 26 C 1.46849 * 110.99962 * 288.25528 * 12 11 8 27 27 C 1.38163 * 120.05528 * 0.02562 * 7 6 5 28 28 H 1.09006 * 109.47063 * 59.99795 * 1 2 3 29 29 H 1.08997 * 109.47656 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47335 * 300.00323 * 1 2 3 31 31 H 1.08002 * 120.03138 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.97093 * 179.74722 * 5 4 3 33 33 H 1.07999 * 119.94537 * 179.97438 * 6 5 4 34 34 H 0.96703 * 113.99925 * 59.99720 * 10 8 7 35 35 H 1.08992 * 109.47290 * 298.44835 * 11 8 7 36 36 H 1.09011 * 109.47217 * 58.45051 * 11 8 7 37 37 H 1.09002 * 109.46442 * 305.86141 * 13 12 11 38 38 H 1.09002 * 109.46322 * 65.83914 * 13 12 11 39 39 H 1.08993 * 109.50419 * 60.76759 * 14 13 12 40 40 H 1.09003 * 109.49975 * 180.88231 * 14 13 12 41 41 H 1.08993 * 109.52267 * 177.56069 * 15 14 13 42 42 H 1.09001 * 109.52201 * 297.68924 * 15 14 13 43 43 H 0.97000 * 119.99290 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.46099 * 294.17464 * 26 12 11 45 45 H 1.09000 * 109.45996 * 54.14854 * 26 12 11 46 46 H 1.07998 * 120.02946 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3753 0.0044 5 6 1.9208 3.6048 -0.0013 6 6 3.3019 3.6758 -0.0065 7 6 4.0559 2.5172 -0.0055 8 6 5.5607 2.5982 -0.0117 9 1 5.9719 1.6863 -0.4448 10 8 5.9739 3.7234 -0.7897 11 6 6.0690 2.7557 1.4227 12 7 7.5374 2.7974 1.4202 13 6 8.0513 3.3179 2.6935 14 6 9.5699 3.4839 2.6026 15 6 10.2088 2.1282 2.2888 16 6 9.6210 1.5858 0.9832 17 1 9.8637 2.2644 0.1653 18 6 10.2010 0.2246 0.6975 19 1 9.5505 -0.6338 0.6186 20 6 11.5623 0.0751 0.5369 21 7 12.3544 1.1206 0.6326 22 14 12.2814 -1.6123 0.1834 23 1 11.7108 -2.1382 -1.0828 24 1 13.7567 -1.5045 0.0538 25 1 11.9480 -2.5356 1.2977 26 6 8.1009 1.4748 1.1210 27 6 3.4311 1.2849 0.0003 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2128 2.3204 0.0083 32 1 1.3339 4.5114 -0.0020 33 1 3.7922 4.6381 -0.0114 34 1 5.6438 4.5710 -0.4615 35 1 5.6800 3.6815 1.8465 36 1 5.7306 1.9110 2.0230 37 1 7.5921 4.2841 2.9028 38 1 7.8098 2.6199 3.4952 39 1 9.8117 4.1923 1.8103 40 1 9.9529 3.8554 3.5531 41 1 11.2865 2.2498 2.1804 42 1 10.0008 1.4310 3.1004 43 1 13.3120 1.0154 0.5192 44 1 7.8590 0.7855 1.9300 45 1 7.6779 1.1024 0.1880 46 1 4.0206 0.3800 0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397727228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:06 Heat of formation + Delta-G solvation = -64.803925 kcal Electronic energy + Delta-G solvation = -25194.375690 eV Core-core repulsion = 21662.872002 eV Total energy + Delta-G solvation = -3531.503689 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.43588 -38.86665 -37.72868 -36.14949 -33.58363 -32.11465 -31.32945 -30.35812 -29.82495 -27.84305 -27.17405 -24.93006 -23.91582 -22.79167 -21.75528 -21.25252 -20.63674 -18.59488 -18.28195 -16.58422 -16.56437 -16.21703 -15.97748 -15.90729 -15.24234 -14.84310 -14.58823 -14.36331 -14.01434 -13.68352 -13.44513 -13.04352 -12.89271 -12.78896 -12.53160 -12.37400 -12.17520 -11.92175 -11.68312 -11.46970 -11.36291 -11.22687 -10.89802 -10.84321 -10.62377 -10.60587 -10.06852 -9.95705 -9.76520 -9.39817 -9.09212 -8.88756 -8.63526 -8.38530 -8.24306 -7.59859 -5.91789 -3.97777 1.11187 1.27299 3.02029 3.36322 3.40755 3.43359 3.54659 4.26701 4.49619 4.55707 4.63004 4.78383 4.80680 4.83718 4.96133 5.06111 5.15699 5.16064 5.28497 5.38055 5.43120 5.45495 5.69664 5.76826 5.80404 5.91458 5.99405 6.09516 6.10706 6.23144 6.28707 6.44403 6.45060 6.53938 6.59315 6.75573 6.80465 7.02895 7.18265 7.27429 7.44291 7.68285 7.78502 7.83563 7.89799 8.15921 8.23839 8.54081 9.06128 9.66118 11.14217 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017095 B = 0.003252 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.471170 B = 8608.131337 C = 9664.613208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.127 3.873 4 C -0.213 4.213 5 C -0.079 4.079 6 C -0.149 4.149 7 C -0.068 4.068 8 C 0.152 3.848 9 H 0.112 0.888 10 O -0.533 6.533 11 C 0.031 3.969 12 N -0.528 5.528 13 C 0.065 3.935 14 C -0.117 4.117 15 C -0.111 4.111 16 C 0.056 3.944 17 H 0.036 0.964 18 C -0.515 4.515 19 H 0.052 0.948 20 C 0.063 3.937 21 N -0.889 5.889 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.279 1.279 26 C 0.066 3.934 27 C -0.141 4.141 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.366 0.634 35 H 0.069 0.931 36 H 0.038 0.962 37 H 0.056 0.944 38 H 0.021 0.979 39 H 0.061 0.939 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.028 0.972 43 H 0.260 0.740 44 H 0.017 0.983 45 H 0.059 0.941 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.678 4.993 1.373 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.232 4.232 5 C -0.097 4.097 6 C -0.167 4.167 7 C -0.069 4.069 8 C 0.092 3.908 9 H 0.130 0.870 10 O -0.337 6.337 11 C -0.098 4.098 12 N -0.252 5.252 13 C -0.063 4.063 14 C -0.154 4.154 15 C -0.149 4.149 16 C 0.038 3.962 17 H 0.054 0.946 18 C -0.554 4.554 19 H 0.070 0.930 20 C -0.138 4.138 21 N -0.527 5.527 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.204 1.204 26 C -0.060 4.060 27 C -0.160 4.160 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.213 0.787 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.078 0.922 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.944 4.700 0.649 22.452 hybrid contribution -0.538 -0.994 0.894 1.441 sum -22.483 3.706 1.543 22.838 Atomic orbital electron populations 1.23042 0.78512 1.03911 1.01234 1.86094 1.21276 1.26968 1.88724 1.18991 0.92232 0.84151 0.96387 1.21203 0.99857 0.92470 1.09659 1.20873 0.94444 0.96926 0.97437 1.20809 0.93738 0.98030 1.04124 1.20526 0.97137 0.92637 0.96647 1.20853 0.86603 0.91461 0.91882 0.87020 1.86722 1.76528 1.16098 1.54398 1.22697 0.90583 1.00881 0.95652 1.61919 1.03556 1.27655 1.32097 1.22027 0.97122 0.97727 0.89452 1.21669 0.93139 1.00741 0.99897 1.21659 1.03127 0.92092 0.98043 1.18636 0.87076 0.96268 0.94255 0.94617 1.21123 0.92059 0.93766 1.48426 0.92950 1.24927 0.97182 0.96429 0.95268 1.69885 1.03956 1.28857 1.50033 0.86700 0.77897 0.84791 0.78827 1.20286 1.21349 1.20426 1.22366 0.99253 0.86098 0.98329 1.20292 0.91382 0.98398 1.05937 0.92709 0.88259 0.92726 0.85657 0.85765 0.85834 0.78750 0.91258 0.94429 0.92581 0.96073 0.91986 0.93608 0.89101 0.95268 0.93046 0.96450 0.92219 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.58 10.50 -19.46 -0.20 -3.78 16 3 C 0.13 1.51 6.69 -39.22 -0.26 1.25 16 4 C -0.21 -2.11 9.04 -39.43 -0.36 -2.47 16 5 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 6 C -0.15 -1.58 9.32 -39.56 -0.37 -1.95 16 7 C -0.07 -0.86 5.00 -104.65 -0.52 -1.38 16 8 C 0.15 2.18 3.22 -27.89 -0.09 2.09 16 9 H 0.11 1.80 6.50 -51.93 -0.34 1.46 16 10 O -0.53 -8.00 13.03 -35.23 -0.46 -8.46 16 11 C 0.03 0.46 4.61 -3.82 -0.02 0.44 16 12 N -0.53 -9.79 4.51 -234.66 -1.06 -10.84 16 13 C 0.06 1.14 5.44 -3.83 -0.02 1.12 16 14 C -0.12 -2.31 6.09 -26.65 -0.16 -2.47 16 15 C -0.11 -2.67 5.02 -26.61 -0.13 -2.81 16 16 C 0.06 1.44 2.26 -91.69 -0.21 1.23 16 17 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 18 C -0.51 -14.36 8.56 -34.44 -0.29 -14.65 16 19 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 20 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 21 N -0.89 -25.73 11.35 55.43 0.63 -25.10 16 22 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.07 1.43 4.53 -3.83 -0.02 1.42 16 27 C -0.14 -1.82 9.62 -39.44 -0.38 -2.20 16 28 H 0.05 0.31 7.67 -51.93 -0.40 -0.08 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 31 H 0.13 0.93 6.30 -52.49 -0.33 0.60 16 32 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 33 H 0.12 1.06 6.61 -52.49 -0.35 0.71 16 34 H 0.37 4.05 7.39 45.56 0.34 4.38 16 35 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 36 H 0.04 0.57 8.06 -51.92 -0.42 0.15 16 37 H 0.06 0.86 7.96 -51.93 -0.41 0.44 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 1.28 6.47 -51.93 -0.34 0.95 16 46 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -31.37 362.60 -9.70 -41.07 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.72 Total: 3.76 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -2.34 Total: -18.67 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: -0.43 Total: -35.94 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.66 Total: -12.25 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.37 -9.70 -41.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397727228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.735 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds