Wall clock time and date at job start Tue Mar 31 2020 10:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35911 * 117.00167 * 2 1 4 4 C 1.38749 * 120.05273 * 0.21128 * 3 2 1 5 5 C 1.38123 * 119.94338 * 180.27414 * 4 3 2 6 6 C 1.38286 * 120.05428 * 359.76341 * 5 4 3 7 7 C 1.38240 * 120.11196 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.97188 * 179.97438 * 7 6 5 9 9 H 1.09007 * 109.47075 * 205.01732 * 8 7 6 10 10 O 1.42896 * 109.47385 * 325.01983 * 8 7 6 11 11 C 1.52998 * 109.47315 * 85.02066 * 8 7 6 12 12 N 1.46905 * 109.47312 * 178.44689 * 11 8 7 13 13 C 1.46847 * 110.99819 * 164.04402 * 12 11 8 14 14 C 1.53035 * 109.52127 * 185.84057 * 13 12 11 15 15 C 1.53122 * 109.28024 * 300.81949 * 14 13 12 16 16 C 1.53116 * 109.15695 * 57.65483 * 15 14 13 17 17 H 1.09004 * 109.50103 * 62.28730 * 16 15 14 18 18 C 1.50697 * 109.50422 * 182.40236 * 16 15 14 19 19 H 1.07999 * 120.00102 * 119.99887 * 18 16 15 20 20 C 1.37881 * 120.00174 * 300.00563 * 18 16 15 21 21 N 1.31516 * 119.99677 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 120.00218 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47241 * 59.99569 * 22 20 18 24 24 H 1.48496 * 109.47460 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46788 * 299.99940 * 22 20 18 26 26 C 1.46849 * 110.99962 * 288.25528 * 12 11 8 27 27 C 1.38163 * 120.05528 * 0.02562 * 7 6 5 28 28 H 1.09006 * 109.47063 * 59.99795 * 1 2 3 29 29 H 1.08997 * 109.47656 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47335 * 300.00323 * 1 2 3 31 31 H 1.08002 * 120.03138 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.97093 * 179.74722 * 5 4 3 33 33 H 1.07999 * 119.94537 * 179.97438 * 6 5 4 34 34 H 0.96703 * 113.99925 * 59.99720 * 10 8 7 35 35 H 1.08992 * 109.47290 * 298.44835 * 11 8 7 36 36 H 1.09011 * 109.47217 * 58.45051 * 11 8 7 37 37 H 1.09002 * 109.46442 * 305.86141 * 13 12 11 38 38 H 1.09002 * 109.46322 * 65.83914 * 13 12 11 39 39 H 1.08993 * 109.50419 * 60.76759 * 14 13 12 40 40 H 1.09003 * 109.49975 * 180.88231 * 14 13 12 41 41 H 1.08993 * 109.52267 * 177.56069 * 15 14 13 42 42 H 1.09001 * 109.52201 * 297.68924 * 15 14 13 43 43 H 0.97000 * 119.99290 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.46099 * 294.17464 * 26 12 11 45 45 H 1.09000 * 109.45996 * 54.14854 * 26 12 11 46 46 H 1.07998 * 120.02946 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3753 0.0044 5 6 1.9208 3.6048 -0.0013 6 6 3.3019 3.6758 -0.0065 7 6 4.0559 2.5172 -0.0055 8 6 5.5607 2.5982 -0.0117 9 1 5.9719 1.6863 -0.4448 10 8 5.9739 3.7234 -0.7897 11 6 6.0690 2.7557 1.4227 12 7 7.5374 2.7974 1.4202 13 6 8.0513 3.3179 2.6935 14 6 9.5699 3.4839 2.6026 15 6 10.2088 2.1282 2.2888 16 6 9.6210 1.5858 0.9832 17 1 9.8637 2.2644 0.1653 18 6 10.2010 0.2246 0.6975 19 1 9.5505 -0.6338 0.6186 20 6 11.5623 0.0751 0.5369 21 7 12.3544 1.1206 0.6326 22 14 12.2814 -1.6123 0.1834 23 1 11.7108 -2.1382 -1.0828 24 1 13.7567 -1.5045 0.0538 25 1 11.9480 -2.5356 1.2977 26 6 8.1009 1.4748 1.1210 27 6 3.4311 1.2849 0.0003 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2128 2.3204 0.0083 32 1 1.3339 4.5114 -0.0020 33 1 3.7922 4.6381 -0.0114 34 1 5.6438 4.5710 -0.4615 35 1 5.6800 3.6815 1.8465 36 1 5.7306 1.9110 2.0230 37 1 7.5921 4.2841 2.9028 38 1 7.8098 2.6199 3.4952 39 1 9.8117 4.1923 1.8103 40 1 9.9529 3.8554 3.5531 41 1 11.2865 2.2498 2.1804 42 1 10.0008 1.4310 3.1004 43 1 13.3120 1.0154 0.5192 44 1 7.8590 0.7855 1.9300 45 1 7.6779 1.1024 0.1880 46 1 4.0206 0.3800 0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397727228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:06 Heat of formation + Delta-G solvation = -86.057529 kcal Electronic energy + Delta-G solvation = -25195.297316 eV Core-core repulsion = 21662.872002 eV Total energy + Delta-G solvation = -3532.425314 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.27145 -40.11614 -38.93965 -37.22165 -35.43788 -33.62241 -32.47191 -31.68765 -31.18914 -28.83326 -28.00374 -26.96355 -25.24973 -23.63137 -23.14790 -22.91064 -21.68697 -20.35913 -19.18179 -18.43899 -17.41355 -17.33755 -16.93812 -16.76421 -16.65136 -16.27194 -16.04734 -15.67917 -15.30306 -14.86289 -14.55801 -14.49344 -14.25262 -14.16944 -13.91351 -13.68581 -13.27954 -13.10569 -12.90940 -12.83618 -12.63837 -12.58594 -12.48721 -12.29782 -11.95844 -11.83500 -11.79083 -11.62986 -11.35832 -11.10260 -10.83173 -10.62957 -10.36924 -9.83535 -9.19544 -9.08430 -8.07645 -6.22028 0.27569 0.46187 1.40499 1.42381 1.49890 2.33652 2.42681 2.69933 3.03384 3.18868 3.60521 3.78134 3.84866 3.95781 4.11493 4.15916 4.23730 4.29597 4.31020 4.38603 4.39446 4.41272 4.53379 4.59064 4.61059 4.69259 4.72009 4.77246 4.87381 4.89949 5.00727 5.03726 5.11645 5.20024 5.30236 5.41534 5.45475 5.52578 5.59696 5.63450 5.78579 5.97149 6.14023 6.21187 6.34655 6.44522 6.46248 6.90329 6.93417 7.45536 8.96887 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017095 B = 0.003252 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.471170 B = 8608.131337 C = 9664.613208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.114 3.886 4 C -0.209 4.209 5 C -0.074 4.074 6 C -0.151 4.151 7 C -0.078 4.078 8 C 0.160 3.840 9 H 0.081 0.919 10 O -0.553 6.553 11 C 0.036 3.964 12 N -0.538 5.538 13 C 0.066 3.934 14 C -0.110 4.110 15 C -0.105 4.105 16 C 0.055 3.945 17 H -0.006 1.006 18 C -0.540 4.540 19 H 0.049 0.951 20 C 0.014 3.986 21 N -0.915 5.915 22 Si 0.954 3.046 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.271 1.271 26 C 0.082 3.918 27 C -0.168 4.168 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.068 0.932 31 H 0.153 0.847 32 H 0.159 0.841 33 H 0.146 0.854 34 H 0.383 0.617 35 H 0.100 0.900 36 H 0.036 0.964 37 H 0.094 0.906 38 H 0.025 0.975 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.021 0.979 43 H 0.261 0.739 44 H 0.012 0.988 45 H 0.051 0.949 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.322 6.188 2.144 26.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.069 3.931 4 C -0.228 4.228 5 C -0.092 4.092 6 C -0.169 4.169 7 C -0.079 4.079 8 C 0.100 3.900 9 H 0.099 0.901 10 O -0.360 6.360 11 C -0.092 4.092 12 N -0.262 5.262 13 C -0.061 4.061 14 C -0.148 4.148 15 C -0.143 4.143 16 C 0.037 3.963 17 H 0.012 0.988 18 C -0.579 4.579 19 H 0.067 0.933 20 C -0.184 4.184 21 N -0.554 5.554 22 Si 0.779 3.221 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.196 1.196 26 C -0.046 4.046 27 C -0.187 4.187 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.086 0.914 31 H 0.170 0.830 32 H 0.176 0.824 33 H 0.164 0.836 34 H 0.233 0.767 35 H 0.118 0.882 36 H 0.054 0.946 37 H 0.112 0.888 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.040 0.960 43 H 0.070 0.930 44 H 0.030 0.970 45 H 0.069 0.931 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -24.614 5.907 1.428 25.353 hybrid contribution 0.208 -1.345 0.621 1.496 sum -24.407 4.562 2.049 24.914 Atomic orbital electron populations 1.23345 0.76284 1.05492 1.02427 1.86061 1.23686 1.27145 1.88754 1.19128 0.92013 0.85189 0.96732 1.21558 1.01219 0.91845 1.08161 1.21293 0.94193 0.98028 0.95692 1.21100 0.94438 0.98048 1.03345 1.20299 0.95807 0.93409 0.98370 1.20581 0.88039 0.90273 0.91126 0.90115 1.86682 1.77116 1.17195 1.54990 1.22751 0.87905 1.02307 0.96219 1.61846 1.05953 1.25375 1.33022 1.22066 0.95439 0.99642 0.88953 1.21577 0.94888 0.97570 1.00718 1.21469 1.01366 0.94577 0.96911 1.18539 0.89907 0.94357 0.93533 0.98775 1.21514 0.92670 0.94835 1.48851 0.93287 1.25722 0.97547 1.00169 0.95005 1.70032 1.04100 1.30782 1.50477 0.85682 0.77202 0.80336 0.78855 1.19786 1.20718 1.19598 1.21986 0.96701 0.88006 0.97860 1.20331 0.92395 0.98208 1.07807 0.91493 0.86705 0.91390 0.82951 0.82383 0.83607 0.76726 0.88210 0.94578 0.88781 0.95720 0.93090 0.91042 0.92379 0.95990 0.93023 0.96980 0.93072 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.54 10.50 -92.55 -0.97 -8.52 16 3 C 0.11 2.62 6.69 22.50 0.15 2.77 16 4 C -0.21 -3.56 9.04 22.36 0.20 -3.36 16 5 C -0.07 -1.14 10.04 22.25 0.22 -0.92 16 6 C -0.15 -2.80 9.32 22.28 0.21 -2.59 16 7 C -0.08 -1.90 5.00 -19.88 -0.10 -2.00 16 8 C 0.16 4.60 3.22 29.85 0.10 4.70 16 9 H 0.08 2.79 6.50 -2.38 -0.02 2.77 16 10 O -0.55 -16.24 13.03 -148.98 -1.94 -18.18 16 11 C 0.04 1.04 4.61 86.30 0.40 1.44 16 12 N -0.54 -19.68 4.51 -896.34 -4.04 -23.72 16 13 C 0.07 2.22 5.44 86.33 0.47 2.69 16 14 C -0.11 -4.28 6.09 30.65 0.19 -4.10 16 15 C -0.10 -5.21 5.02 30.67 0.15 -5.05 16 16 C 0.06 2.96 2.26 -11.49 -0.03 2.93 16 17 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 18 C -0.54 -31.32 8.56 25.60 0.22 -31.10 16 19 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 20 C 0.01 0.83 5.30 84.66 0.45 1.28 16 21 N -0.91 -54.75 11.35 21.45 0.24 -54.51 16 22 Si 0.95 45.14 29.54 68.60 2.03 47.17 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 26 C 0.08 3.67 4.53 86.33 0.39 4.06 16 27 C -0.17 -4.44 9.62 22.36 0.22 -4.22 16 28 H 0.07 0.61 7.67 -2.38 -0.02 0.59 16 29 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.60 7.65 -2.39 -0.02 0.58 16 31 H 0.15 1.67 6.30 -2.91 -0.02 1.66 16 32 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 33 H 0.15 1.95 6.61 -2.91 -0.02 1.94 16 34 H 0.38 7.68 7.39 -74.05 -0.55 7.13 16 35 H 0.10 2.26 7.87 -2.39 -0.02 2.24 16 36 H 0.04 1.06 8.06 -2.38 -0.02 1.04 16 37 H 0.09 2.49 7.96 -2.39 -0.02 2.47 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.06 3.25 6.15 -2.39 -0.01 3.23 16 42 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 44 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.05 2.33 6.47 -2.39 -0.02 2.32 16 46 H 0.12 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -71.14 362.60 0.09 -71.05 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.42 Total: 18.84 kcal Atomic # 6 Polarization: -36.49 SS G_CDS: 4.35 Total: -32.14 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -3.80 Total: -78.23 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -2.91 Total: -26.69 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -71.14 0.09 -71.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397727228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.008 kcal (2) G-P(sol) polarization free energy of solvation -71.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds