Wall clock time and date at job start Tue Mar 31 2020 10:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35985 * 116.99970 * 2 1 4 4 C 1.38723 * 120.00187 * 0.02562 * 3 2 1 5 5 C 1.38105 * 119.99754 * 179.97438 * 4 3 2 6 6 C 1.38723 * 120.00359 * 0.05098 * 5 4 3 7 7 O 1.35984 * 119.99890 * 179.97438 * 6 5 4 8 8 C 1.42901 * 117.00091 * 359.95430 * 7 6 5 9 9 C 1.38678 * 119.99749 * 359.94915 * 6 5 4 10 10 C 1.50693 * 119.99578 * 180.30095 * 9 6 5 11 11 N 1.46899 * 109.47226 * 79.72942 * 10 9 6 12 12 C 1.46844 * 111.00041 * 66.04413 * 11 10 9 13 13 C 1.53038 * 109.52092 * 174.16161 * 12 11 10 14 14 C 1.53123 * 109.28125 * 59.17754 * 13 12 11 15 15 C 1.53118 * 109.15917 * 302.34859 * 14 13 12 16 16 H 1.09003 * 109.50127 * 297.70704 * 15 14 13 17 17 C 1.50705 * 109.50513 * 177.63307 * 15 14 13 18 18 H 1.07993 * 119.99780 * 239.99974 * 17 15 14 19 19 C 1.37885 * 119.99914 * 59.99337 * 17 15 14 20 20 N 1.31515 * 119.99815 * 0.02562 * 19 17 15 21 21 Si 1.86787 * 119.99849 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47283 * 90.00354 * 21 19 17 23 23 H 1.48507 * 109.47294 * 210.00064 * 21 19 17 24 24 H 1.48505 * 109.47579 * 330.00048 * 21 19 17 25 25 C 1.46844 * 110.99608 * 301.83077 * 11 10 9 26 26 C 1.38155 * 119.99899 * 0.02702 * 9 6 5 27 27 H 1.09005 * 109.46899 * 59.99953 * 1 2 3 28 28 H 1.08997 * 109.47467 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46775 * 300.00775 * 1 2 3 30 30 H 1.08004 * 119.99547 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.99705 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.46870 * 300.00289 * 8 7 6 33 33 H 1.09000 * 109.47318 * 59.99885 * 8 7 6 34 34 H 1.08996 * 109.46751 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.47054 * 199.72747 * 10 9 6 36 36 H 1.09002 * 109.47466 * 319.72116 * 10 9 6 37 37 H 1.09000 * 109.45949 * 294.17128 * 12 11 10 38 38 H 1.09002 * 109.46397 * 54.14718 * 12 11 10 39 39 H 1.09005 * 109.50411 * 179.11596 * 13 12 11 40 40 H 1.08994 * 109.50527 * 299.23647 * 13 12 11 41 41 H 1.09005 * 109.52111 * 62.24798 * 14 13 12 42 42 H 1.08998 * 109.52352 * 182.37652 * 14 13 12 43 43 H 0.96998 * 119.99870 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.46474 * 305.85428 * 25 11 10 45 45 H 1.08997 * 109.46039 * 65.82752 * 25 11 10 46 46 H 1.08000 * 119.99257 * 179.97438 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3751 0.0005 5 6 1.9180 3.6056 0.0011 6 6 3.3033 3.6782 0.0000 7 8 3.9206 4.8898 0.0000 8 6 3.0807 6.0459 0.0001 9 6 4.0585 2.5151 -0.0005 10 6 5.5634 2.5940 0.0052 11 7 6.0345 2.8623 1.3704 12 6 5.7406 1.7319 2.2603 13 6 6.3712 1.9832 3.6318 14 6 5.8054 3.2795 4.2186 15 6 6.0824 4.4325 3.2500 16 1 7.1588 4.5617 3.1364 17 6 5.4778 5.7018 3.7926 18 1 4.7266 6.2286 3.2230 19 6 5.8838 6.1906 5.0163 20 7 6.7990 5.5492 5.7097 21 14 5.1339 7.7634 5.6892 22 1 3.9334 7.4328 6.4985 23 1 6.1293 8.4608 6.5426 24 1 4.7428 8.6473 4.5618 25 6 5.4601 4.1101 1.8895 26 6 3.4312 1.2841 -0.0006 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2123 2.3185 0.0005 31 1 1.3297 4.5114 0.0019 32 1 2.4514 6.0378 -0.8898 33 1 2.4515 6.0378 0.8901 34 1 3.6986 6.9438 -0.0004 35 1 5.9781 1.6479 -0.3429 36 1 5.8876 3.3978 -0.6558 37 1 4.6612 1.6276 2.3706 38 1 6.1520 0.8171 1.8335 39 1 6.1396 1.1513 4.2969 40 1 7.4521 2.0739 3.5243 41 1 4.7300 3.1751 4.3626 42 1 6.2831 3.4846 5.1767 43 1 7.0848 5.8932 6.5704 44 1 5.6679 4.9227 1.1934 45 1 4.3821 3.9947 2.0014 46 1 4.0195 0.3784 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397794595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:09 Heat of formation + Delta-G solvation = -45.726228 kcal Electronic energy + Delta-G solvation = -26598.090582 eV Core-core repulsion = 23067.414164 eV Total energy + Delta-G solvation = -3530.676418 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.62580 -39.02551 -37.85183 -36.22267 -33.87896 -32.14909 -30.56468 -29.71491 -29.47078 -27.47560 -26.79903 -25.64580 -24.83397 -22.51516 -21.94841 -21.19198 -20.64604 -18.57617 -17.75322 -17.42630 -16.70179 -16.35027 -15.80257 -15.44148 -14.91139 -14.73006 -14.62139 -14.17107 -14.08106 -13.72497 -13.39156 -13.11216 -12.73865 -12.63012 -12.40754 -12.31938 -12.09129 -11.88549 -11.56985 -11.50409 -11.36285 -11.03426 -10.90344 -10.71560 -10.57420 -10.54325 -10.23820 -9.96759 -9.70991 -9.36034 -8.99958 -8.72562 -8.57410 -8.22502 -7.63232 -7.45569 -5.89705 -3.94757 1.30739 1.58577 3.25652 3.32909 3.39836 3.41637 3.57140 3.79308 4.47155 4.70937 4.76289 4.87501 4.97101 5.01462 5.15396 5.24539 5.30501 5.39417 5.39877 5.40262 5.53452 5.64793 5.75671 5.86271 5.88455 5.99923 6.08807 6.21368 6.31639 6.34037 6.36351 6.47596 6.63772 6.69148 6.79837 6.86755 6.92171 7.20990 7.33432 7.34912 7.52740 7.63105 7.81531 7.84838 7.98482 8.21359 8.28852 8.59864 9.09397 9.68300 11.16417 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.004744 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.641134 B = 5900.768534 C = 6487.074046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C 0.083 3.917 4 C -0.172 4.172 5 C -0.173 4.173 6 C 0.115 3.885 7 O -0.298 6.298 8 C 0.028 3.972 9 C -0.108 4.108 10 C 0.101 3.899 11 N -0.525 5.525 12 C 0.060 3.940 13 C -0.117 4.117 14 C -0.109 4.109 15 C 0.052 3.948 16 H 0.031 0.969 17 C -0.506 4.506 18 H 0.051 0.949 19 C 0.062 3.938 20 N -0.889 5.889 21 Si 0.887 3.113 22 H -0.283 1.283 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.073 3.927 26 C -0.103 4.103 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.025 0.975 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.059 0.941 41 H 0.026 0.974 42 H 0.089 0.911 43 H 0.258 0.742 44 H 0.070 0.930 45 H 0.022 0.978 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.744 -7.480 -12.798 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.039 3.961 4 C -0.191 4.191 5 C -0.192 4.192 6 C 0.069 3.931 7 O -0.211 6.211 8 C -0.068 4.068 9 C -0.111 4.111 10 C -0.028 4.028 11 N -0.247 5.247 12 C -0.068 4.068 13 C -0.155 4.155 14 C -0.148 4.148 15 C 0.033 3.967 16 H 0.049 0.951 17 C -0.545 4.545 18 H 0.069 0.931 19 C -0.139 4.139 20 N -0.528 5.528 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.053 4.053 26 C -0.123 4.123 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.045 0.955 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.040 0.960 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.809 -7.532 -12.629 17.676 hybrid contribution -2.099 1.024 0.582 2.406 sum -11.908 -6.509 -12.047 18.146 Atomic orbital electron populations 1.22977 0.78989 1.03527 1.01073 1.86058 1.20843 1.26924 1.89589 1.18826 0.92200 0.84007 1.01095 1.20923 0.99577 0.91792 1.06775 1.20992 0.93415 0.98234 1.06559 1.18689 0.90469 0.85952 0.98039 1.86354 1.34560 1.11810 1.88359 1.23006 0.96006 0.87220 1.00536 1.19978 0.98622 0.89732 1.02724 1.21166 0.86358 1.02120 0.93119 1.62439 1.57674 1.04217 1.00417 1.22044 0.97779 0.92751 0.94229 1.21673 1.00567 0.99126 0.94144 1.21636 0.97966 0.92597 1.02552 1.18714 0.96644 0.92886 0.88456 0.95054 1.21125 1.22247 1.07851 1.03268 0.93057 1.24928 0.95085 0.96888 0.97001 1.69897 1.30384 1.39037 1.13504 0.86691 0.78913 0.83961 0.78943 1.20952 1.21289 1.20060 1.22428 0.95794 0.88669 0.98409 1.20123 0.91094 0.97361 1.03677 0.93029 0.88546 0.92882 0.85682 0.85377 0.93520 0.92668 0.88118 0.90717 0.89741 0.95637 0.92659 0.93761 0.92175 0.95511 0.89308 0.93200 0.91208 0.95962 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.15 10.50 -19.69 -0.21 -4.35 16 3 C 0.08 1.18 6.69 -39.24 -0.26 0.92 16 4 C -0.17 -2.27 9.03 -39.45 -0.36 -2.62 16 5 C -0.17 -2.44 9.03 -39.45 -0.36 -2.80 16 6 C 0.11 1.84 5.15 -39.24 -0.20 1.64 16 7 O -0.30 -4.89 6.37 -19.69 -0.13 -5.01 16 8 C 0.03 0.35 9.81 101.05 0.99 1.35 16 9 C -0.11 -1.72 4.09 -104.49 -0.43 -2.15 16 10 C 0.10 1.63 5.39 -4.98 -0.03 1.60 16 11 N -0.53 -10.22 4.86 -236.12 -1.15 -11.37 16 12 C 0.06 1.13 5.00 -3.84 -0.02 1.11 16 13 C -0.12 -2.42 6.09 -26.65 -0.16 -2.59 16 14 C -0.11 -2.71 5.02 -26.61 -0.13 -2.84 16 15 C 0.05 1.34 2.26 -91.69 -0.21 1.13 16 16 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 17 C -0.51 -14.05 8.57 -34.43 -0.29 -14.34 16 18 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -25.78 11.35 55.43 0.63 -25.15 16 21 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.07 1.62 2.96 -3.83 -0.01 1.61 16 26 C -0.10 -1.53 8.84 -39.45 -0.35 -1.88 16 27 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 30 H 0.13 1.31 6.29 -52.48 -0.33 0.98 16 31 H 0.13 1.53 6.29 -52.48 -0.33 1.20 16 32 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 33 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.05 7.92 -51.93 -0.41 0.64 16 36 H 0.08 1.36 7.85 -51.93 -0.41 0.95 16 37 H 0.03 0.50 7.01 -51.93 -0.36 0.14 16 38 H 0.05 0.91 8.06 -51.93 -0.42 0.49 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.07 1.57 6.65 -51.93 -0.35 1.23 16 45 H 0.02 0.51 5.79 -51.93 -0.30 0.21 16 46 H 0.13 1.79 8.03 -52.49 -0.42 1.37 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -30.87 352.58 -8.80 -39.67 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.32 Total: 1.49 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -0.92 Total: -16.98 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.52 Total: -36.52 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.33 Total: -9.36 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.87 -8.80 -39.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397794595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.059 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds