Wall clock time and date at job start Tue Mar 31 2020 10:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35985 * 116.99970 * 2 1 4 4 C 1.38723 * 120.00187 * 0.02562 * 3 2 1 5 5 C 1.38105 * 119.99754 * 179.97438 * 4 3 2 6 6 C 1.38723 * 120.00359 * 0.05098 * 5 4 3 7 7 O 1.35984 * 119.99890 * 179.97438 * 6 5 4 8 8 C 1.42901 * 117.00091 * 359.95430 * 7 6 5 9 9 C 1.38678 * 119.99749 * 359.94915 * 6 5 4 10 10 C 1.50693 * 119.99578 * 180.30095 * 9 6 5 11 11 N 1.46899 * 109.47226 * 79.72942 * 10 9 6 12 12 C 1.46844 * 111.00041 * 66.04413 * 11 10 9 13 13 C 1.53038 * 109.52092 * 174.16161 * 12 11 10 14 14 C 1.53123 * 109.28125 * 59.17754 * 13 12 11 15 15 C 1.53118 * 109.15917 * 302.34859 * 14 13 12 16 16 H 1.09003 * 109.50127 * 297.70704 * 15 14 13 17 17 C 1.50705 * 109.50513 * 177.63307 * 15 14 13 18 18 H 1.07993 * 119.99780 * 239.99974 * 17 15 14 19 19 C 1.37885 * 119.99914 * 59.99337 * 17 15 14 20 20 N 1.31515 * 119.99815 * 0.02562 * 19 17 15 21 21 Si 1.86787 * 119.99849 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47283 * 90.00354 * 21 19 17 23 23 H 1.48507 * 109.47294 * 210.00064 * 21 19 17 24 24 H 1.48505 * 109.47579 * 330.00048 * 21 19 17 25 25 C 1.46844 * 110.99608 * 301.83077 * 11 10 9 26 26 C 1.38155 * 119.99899 * 0.02702 * 9 6 5 27 27 H 1.09005 * 109.46899 * 59.99953 * 1 2 3 28 28 H 1.08997 * 109.47467 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46775 * 300.00775 * 1 2 3 30 30 H 1.08004 * 119.99547 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.99705 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.46870 * 300.00289 * 8 7 6 33 33 H 1.09000 * 109.47318 * 59.99885 * 8 7 6 34 34 H 1.08996 * 109.46751 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.47054 * 199.72747 * 10 9 6 36 36 H 1.09002 * 109.47466 * 319.72116 * 10 9 6 37 37 H 1.09000 * 109.45949 * 294.17128 * 12 11 10 38 38 H 1.09002 * 109.46397 * 54.14718 * 12 11 10 39 39 H 1.09005 * 109.50411 * 179.11596 * 13 12 11 40 40 H 1.08994 * 109.50527 * 299.23647 * 13 12 11 41 41 H 1.09005 * 109.52111 * 62.24798 * 14 13 12 42 42 H 1.08998 * 109.52352 * 182.37652 * 14 13 12 43 43 H 0.96998 * 119.99870 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.46474 * 305.85428 * 25 11 10 45 45 H 1.08997 * 109.46039 * 65.82752 * 25 11 10 46 46 H 1.08000 * 119.99257 * 179.97438 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3751 0.0005 5 6 1.9180 3.6056 0.0011 6 6 3.3033 3.6782 0.0000 7 8 3.9206 4.8898 0.0000 8 6 3.0807 6.0459 0.0001 9 6 4.0585 2.5151 -0.0005 10 6 5.5634 2.5940 0.0052 11 7 6.0345 2.8623 1.3704 12 6 5.7406 1.7319 2.2603 13 6 6.3712 1.9832 3.6318 14 6 5.8054 3.2795 4.2186 15 6 6.0824 4.4325 3.2500 16 1 7.1588 4.5617 3.1364 17 6 5.4778 5.7018 3.7926 18 1 4.7266 6.2286 3.2230 19 6 5.8838 6.1906 5.0163 20 7 6.7990 5.5492 5.7097 21 14 5.1339 7.7634 5.6892 22 1 3.9334 7.4328 6.4985 23 1 6.1293 8.4608 6.5426 24 1 4.7428 8.6473 4.5618 25 6 5.4601 4.1101 1.8895 26 6 3.4312 1.2841 -0.0006 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2123 2.3185 0.0005 31 1 1.3297 4.5114 0.0019 32 1 2.4514 6.0378 -0.8898 33 1 2.4515 6.0378 0.8901 34 1 3.6986 6.9438 -0.0004 35 1 5.9781 1.6479 -0.3429 36 1 5.8876 3.3978 -0.6558 37 1 4.6612 1.6276 2.3706 38 1 6.1520 0.8171 1.8335 39 1 6.1396 1.1513 4.2969 40 1 7.4521 2.0739 3.5243 41 1 4.7300 3.1751 4.3626 42 1 6.2831 3.4846 5.1767 43 1 7.0848 5.8932 6.5704 44 1 5.6679 4.9227 1.1934 45 1 4.3821 3.9947 2.0014 46 1 4.0195 0.3784 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397794595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:08 Heat of formation + Delta-G solvation = -64.775744 kcal Electronic energy + Delta-G solvation = -26598.916631 eV Core-core repulsion = 23067.414164 eV Total energy + Delta-G solvation = -3531.502467 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.74929 -40.09410 -39.34125 -37.37411 -35.61996 -33.88910 -31.84466 -31.58258 -30.58227 -28.43363 -27.73035 -26.98282 -26.86300 -23.94317 -23.27799 -22.78945 -21.95390 -20.27171 -18.94186 -18.50428 -18.30599 -17.73685 -17.00395 -16.60506 -16.44468 -16.12126 -15.72723 -15.69306 -15.45426 -15.01093 -14.79484 -14.60917 -14.33279 -13.91353 -13.81908 -13.65404 -13.38896 -13.17418 -12.91722 -12.84490 -12.75972 -12.57519 -12.44020 -12.30066 -12.16626 -11.82712 -11.64167 -11.61719 -11.36137 -11.30557 -10.81052 -10.56894 -10.34340 -9.92806 -9.09675 -8.63330 -8.04132 -6.17421 0.22593 0.49584 1.40616 1.41102 1.51309 2.37365 2.44314 2.53049 2.69799 3.22466 3.30387 3.75241 3.77408 4.10166 4.18830 4.23926 4.30036 4.34886 4.37029 4.40769 4.41708 4.47400 4.51840 4.57546 4.72820 4.73074 4.76390 4.85426 4.88612 4.91130 5.00250 5.07331 5.14884 5.20449 5.27471 5.30946 5.36017 5.44411 5.56176 5.64218 5.66480 6.01159 6.18916 6.26360 6.37434 6.42746 6.53386 6.58190 6.94963 7.49410 9.00817 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.004744 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.641134 B = 5900.768534 C = 6487.074046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.078 3.922 4 C -0.169 4.169 5 C -0.178 4.178 6 C 0.092 3.908 7 O -0.323 6.323 8 C 0.022 3.978 9 C -0.124 4.124 10 C 0.104 3.896 11 N -0.537 5.537 12 C 0.068 3.932 13 C -0.112 4.112 14 C -0.101 4.101 15 C 0.049 3.951 16 H -0.007 1.007 17 C -0.526 4.526 18 H 0.050 0.950 19 C 0.013 3.987 20 N -0.918 5.918 21 Si 0.951 3.049 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.265 1.265 25 C 0.100 3.900 26 C -0.111 4.111 27 H 0.065 0.935 28 H 0.119 0.881 29 H 0.057 0.943 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.020 0.980 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.013 0.987 42 H 0.057 0.943 43 H 0.259 0.741 44 H 0.060 0.940 45 H 0.013 0.987 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.670 -8.266 -13.816 20.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.033 3.967 4 C -0.188 4.188 5 C -0.197 4.197 6 C 0.047 3.953 7 O -0.237 6.237 8 C -0.072 4.072 9 C -0.127 4.127 10 C -0.023 4.023 11 N -0.259 5.259 12 C -0.060 4.060 13 C -0.150 4.150 14 C -0.139 4.139 15 C 0.030 3.970 16 H 0.011 0.989 17 C -0.564 4.564 18 H 0.068 0.932 19 C -0.186 4.186 20 N -0.557 5.557 21 Si 0.777 3.223 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.190 1.190 25 C -0.027 4.027 26 C -0.130 4.130 27 H 0.084 0.916 28 H 0.137 0.863 29 H 0.076 0.924 30 H 0.171 0.829 31 H 0.164 0.836 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.038 0.962 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.032 0.968 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.751 -8.328 -13.669 19.856 hybrid contribution -1.561 1.220 0.870 2.164 sum -13.312 -7.109 -12.799 19.787 Atomic orbital electron populations 1.23300 0.76785 1.05460 1.01960 1.86044 1.23146 1.26316 1.89373 1.18967 0.92283 0.84851 1.00594 1.21255 1.01046 0.91101 1.05389 1.21264 0.92912 0.99493 1.05985 1.18962 0.91464 0.85870 0.99045 1.86285 1.36051 1.12681 1.88654 1.23169 0.96154 0.86374 1.01544 1.19947 0.98192 0.90369 1.04151 1.21153 0.87186 1.03185 0.90799 1.62353 1.58081 1.03403 1.02061 1.21997 0.97344 0.93651 0.93019 1.21602 0.99959 0.97557 0.95851 1.21434 0.96823 0.94599 1.01092 1.18669 0.94296 0.93037 0.91010 0.98926 1.21457 1.22402 1.08878 1.03694 0.93193 1.25718 0.95476 1.00106 0.97262 1.70047 1.31458 1.40495 1.13733 0.85663 0.78108 0.80109 0.78420 1.20377 1.20956 1.18959 1.21947 0.94731 0.90007 0.95992 1.20269 0.91859 0.97269 1.03608 0.91616 0.86282 0.92406 0.82910 0.83564 0.90791 0.93246 0.87769 0.88200 0.90197 0.96221 0.89326 0.91526 0.92886 0.96788 0.92473 0.93217 0.92165 0.96840 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.33 -7.83 10.50 -93.38 -0.98 -8.81 16 3 C 0.08 2.05 6.69 22.49 0.15 2.20 16 4 C -0.17 -4.06 9.03 22.35 0.20 -3.86 16 5 C -0.18 -4.72 9.03 22.35 0.20 -4.52 16 6 C 0.09 2.90 5.15 22.49 0.12 3.01 16 7 O -0.32 -10.59 6.37 -93.37 -0.59 -11.19 16 8 C 0.02 0.56 9.81 113.37 1.11 1.67 16 9 C -0.12 -3.82 4.09 -19.78 -0.08 -3.91 16 10 C 0.10 3.27 5.39 85.56 0.46 3.73 16 11 N -0.54 -20.70 4.86 -900.96 -4.38 -25.08 16 12 C 0.07 2.45 5.00 86.33 0.43 2.88 16 13 C -0.11 -4.60 6.09 30.65 0.19 -4.41 16 14 C -0.10 -5.16 5.02 30.67 0.15 -5.00 16 15 C 0.05 2.61 2.26 -11.49 -0.03 2.58 16 16 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 17 C -0.53 -30.01 8.57 25.60 0.22 -29.79 16 18 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 19 C 0.01 0.72 5.30 84.66 0.45 1.17 16 20 N -0.92 -54.76 11.35 21.45 0.24 -54.52 16 21 Si 0.95 44.40 29.54 68.60 2.03 46.42 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 C 0.10 4.54 2.96 86.33 0.26 4.80 16 26 C -0.11 -3.09 8.84 22.35 0.20 -2.90 16 27 H 0.07 0.76 7.66 -2.38 -0.02 0.74 16 28 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 0.77 7.66 -2.39 -0.02 0.76 16 30 H 0.15 2.69 6.29 -2.91 -0.02 2.67 16 31 H 0.15 3.20 6.29 -2.91 -0.02 3.18 16 32 H 0.07 1.41 7.66 -2.39 -0.02 1.40 16 33 H 0.05 1.27 7.66 -2.39 -0.02 1.25 16 34 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.10 2.59 7.92 -2.39 -0.02 2.57 16 36 H 0.08 2.55 7.85 -2.39 -0.02 2.53 16 37 H 0.02 0.74 7.01 -2.39 -0.02 0.73 16 38 H 0.09 2.65 8.06 -2.39 -0.02 2.63 16 39 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 40 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.06 3.25 6.15 -2.39 -0.01 3.24 16 43 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 44 H 0.06 2.80 6.65 -2.39 -0.02 2.79 16 45 H 0.01 0.63 5.79 -2.39 -0.01 0.62 16 46 H 0.14 3.56 8.03 -2.91 -0.02 3.53 16 Total: -1.00 -68.26 352.58 2.42 -65.84 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.96 Total: 18.30 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 5.14 Total: -30.96 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -4.13 Total: -79.59 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -1.58 Total: -20.00 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -68.26 2.42 -65.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397794595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.060 kcal (2) G-P(sol) polarization free energy of solvation -68.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds