Wall clock time and date at job start Tue Mar 31 2020 10:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35975 * 117.00575 * 2 1 4 4 C 1.38723 * 119.99756 * 0.02562 * 3 2 1 5 5 C 1.38113 * 119.99936 * 179.70185 * 4 3 2 6 6 C 1.38716 * 119.99817 * 0.54816 * 5 4 3 7 7 O 1.35985 * 120.00147 * 179.72136 * 6 5 4 8 8 C 1.42901 * 116.99650 * 359.72908 * 7 6 5 9 9 C 1.38673 * 120.00239 * 359.45193 * 6 5 4 10 10 C 1.50702 * 120.00481 * 180.29882 * 9 6 5 11 11 N 1.46898 * 109.47235 * 79.99335 * 10 9 6 12 12 C 1.46847 * 110.99696 * 66.05264 * 11 10 9 13 13 C 1.53035 * 109.52332 * 185.83654 * 12 11 10 14 14 C 1.53119 * 109.27987 * 300.82310 * 13 12 11 15 15 C 1.53118 * 109.16436 * 57.65006 * 14 13 12 16 16 H 1.08998 * 109.49748 * 62.32726 * 15 14 13 17 17 C 1.50696 * 109.50252 * 182.40652 * 15 14 13 18 18 H 1.08002 * 119.99816 * 120.00639 * 17 15 14 19 19 C 1.37877 * 120.00213 * 299.99779 * 17 15 14 20 20 N 1.31507 * 119.99963 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 119.99972 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47110 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46838 * 120.00250 * 21 19 17 24 24 H 1.48496 * 109.47093 * 240.00196 * 21 19 17 25 25 C 1.46851 * 110.99970 * 190.26008 * 11 10 9 26 26 C 1.38155 * 119.99955 * 0.27031 * 9 6 5 27 27 H 1.08996 * 109.47396 * 300.00618 * 1 2 3 28 28 H 1.09005 * 109.46807 * 59.99903 * 1 2 3 29 29 H 1.08997 * 109.47645 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00014 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.00025 * 180.29303 * 5 4 3 32 32 H 1.09005 * 109.47329 * 179.97438 * 8 7 6 33 33 H 1.08996 * 109.47352 * 299.99791 * 8 7 6 34 34 H 1.08999 * 109.47144 * 59.99816 * 8 7 6 35 35 H 1.08999 * 109.47159 * 199.99891 * 10 9 6 36 36 H 1.09004 * 109.46692 * 319.99395 * 10 9 6 37 37 H 1.09000 * 109.46172 * 305.85418 * 12 11 10 38 38 H 1.09002 * 109.46581 * 65.82236 * 12 11 10 39 39 H 1.09005 * 109.50165 * 60.75650 * 13 12 11 40 40 H 1.09000 * 109.50535 * 180.87689 * 13 12 11 41 41 H 1.09000 * 109.52425 * 177.56267 * 14 13 12 42 42 H 1.09000 * 109.51817 * 297.68086 * 14 13 12 43 43 H 0.96996 * 120.00346 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.45995 * 294.17860 * 25 11 10 45 45 H 1.08994 * 109.46341 * 54.14577 * 25 11 10 46 46 H 1.07997 * 120.00394 * 179.97438 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9180 3.6055 0.0068 6 6 3.3033 3.6780 0.0010 7 8 3.9207 4.8896 0.0014 8 6 3.0808 6.0457 0.0019 9 6 4.0585 2.5150 0.0004 10 6 5.5635 2.5937 0.0010 11 7 6.0395 2.8587 1.3652 12 6 5.7487 1.7259 2.2533 13 6 6.1248 2.0932 3.6905 14 6 7.6144 2.4430 3.7496 15 6 7.8994 3.5932 2.7800 16 1 7.3393 4.4760 3.0881 17 6 9.3739 3.9045 2.7883 18 1 9.9485 3.8213 1.8776 19 6 9.9893 4.2957 3.9585 20 7 9.2897 4.3966 5.0674 21 14 11.8168 4.6823 3.9686 22 1 12.3702 4.4939 2.6034 23 1 12.0227 6.0895 4.3958 24 1 12.5102 3.7713 4.9143 25 6 7.4718 3.1825 1.3692 26 6 3.4313 1.2840 0.0000 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2124 2.3185 0.0005 31 1 1.3299 4.5113 0.0120 32 1 3.6987 6.9437 0.0026 33 1 2.4515 6.0380 -0.8880 34 1 2.4516 6.0373 0.8919 35 1 5.9769 1.6485 -0.3510 36 1 5.8853 3.3992 -0.6591 37 1 4.6856 1.4902 2.2050 38 1 6.3277 0.8583 1.9368 39 1 5.5363 2.9523 4.0125 40 1 5.9234 1.2467 4.3470 41 1 7.8772 2.7469 4.7628 42 1 8.2046 1.5716 3.4662 43 1 9.7227 4.6715 5.8907 44 1 8.0427 2.3080 1.0568 45 1 7.6603 4.0046 0.6788 46 1 4.0194 0.3782 -0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397794600.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:14 Heat of formation + Delta-G solvation = -49.153452 kcal Electronic energy + Delta-G solvation = -25684.046420 eV Core-core repulsion = 22153.221387 eV Total energy + Delta-G solvation = -3530.825033 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.51807 -38.94757 -38.05151 -36.30552 -33.88809 -32.16358 -30.77605 -29.78379 -29.57452 -27.53027 -26.87429 -25.64803 -24.83494 -22.27890 -22.05235 -21.47247 -20.57473 -18.48059 -17.93138 -17.49034 -16.76229 -16.30099 -15.89021 -15.48873 -14.95987 -14.79150 -14.62495 -14.39838 -14.10083 -13.69013 -13.37093 -13.11826 -12.82239 -12.69706 -12.61411 -12.39633 -12.13910 -11.81175 -11.65977 -11.60588 -11.53430 -11.05480 -10.91537 -10.71869 -10.60445 -10.49914 -10.39493 -10.00364 -9.74883 -9.38025 -9.00881 -8.83145 -8.60107 -8.23127 -7.64827 -7.48950 -5.90550 -3.96272 1.23994 1.52917 3.19713 3.34083 3.41940 3.45906 3.48862 3.71399 4.47983 4.65359 4.71674 4.81055 4.91392 4.96222 5.07488 5.13353 5.22082 5.25904 5.36689 5.39476 5.45917 5.55820 5.65000 5.81069 5.84116 5.93758 6.00376 6.15424 6.25309 6.27653 6.37211 6.39863 6.52208 6.63381 6.68011 6.84188 6.86047 7.08400 7.28521 7.32875 7.50338 7.58110 7.80309 7.83885 7.94931 8.18781 8.26827 8.56960 9.08303 9.67523 11.15376 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.003455 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.206077 B = 8101.713616 C = 8779.970185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.085 3.915 4 C -0.172 4.172 5 C -0.176 4.176 6 C 0.119 3.881 7 O -0.296 6.296 8 C 0.029 3.971 9 C -0.061 4.061 10 C 0.101 3.899 11 N -0.526 5.526 12 C 0.061 3.939 13 C -0.116 4.116 14 C -0.110 4.110 15 C 0.056 3.944 16 H 0.034 0.966 17 C -0.511 4.511 18 H 0.053 0.947 19 C 0.062 3.938 20 N -0.888 5.888 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.070 3.930 26 C -0.107 4.107 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.099 0.901 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.035 0.965 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.021 0.979 39 H 0.058 0.942 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.029 0.971 43 H 0.258 0.742 44 H 0.017 0.983 45 H 0.059 0.941 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.565 -3.951 -10.742 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.040 3.960 4 C -0.191 4.191 5 C -0.195 4.195 6 C 0.073 3.927 7 O -0.209 6.209 8 C -0.067 4.067 9 C -0.062 4.062 10 C -0.027 4.027 11 N -0.250 5.250 12 C -0.067 4.067 13 C -0.154 4.154 14 C -0.148 4.148 15 C 0.037 3.963 16 H 0.052 0.948 17 C -0.550 4.550 18 H 0.072 0.928 19 C -0.139 4.139 20 N -0.528 5.528 21 Si 0.717 3.283 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.057 4.057 26 C -0.127 4.127 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.117 0.883 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.039 0.961 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.048 0.952 43 H 0.068 0.932 44 H 0.036 0.964 45 H 0.078 0.922 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.481 -3.628 -10.378 21.504 hybrid contribution 0.758 -0.244 -0.172 0.814 sum -17.724 -3.872 -10.550 20.986 Atomic orbital electron populations 1.22980 0.78945 1.03580 1.01051 1.86065 1.20862 1.26894 1.89545 1.18784 0.92083 0.84055 1.01033 1.20913 0.99572 0.91738 1.06924 1.20976 0.93305 0.98211 1.06975 1.18676 0.90232 0.85729 0.98047 1.86247 1.34566 1.11680 1.88359 1.23010 0.95891 0.87250 1.00531 1.19020 0.96079 0.89503 1.01630 1.20844 0.89066 1.00256 0.92495 1.61984 1.18835 1.38188 1.06037 1.22064 0.99058 0.91109 0.94426 1.21656 1.00106 0.99810 0.93791 1.21645 0.90801 0.97993 1.04357 1.18651 0.95145 0.94440 0.88068 0.94767 1.21205 0.93898 1.45010 0.94913 0.92825 1.24933 0.97765 0.95511 0.95702 1.69906 1.35300 1.47951 0.99599 0.86589 0.85884 0.77867 0.77943 1.19872 1.21118 1.21169 1.22300 0.83793 0.98096 1.01490 1.20150 0.91208 0.97453 1.03840 0.92879 0.93005 0.88533 0.85642 0.85397 0.88288 0.93382 0.92959 0.94699 0.89753 0.92296 0.96095 0.92279 0.93743 0.89223 0.95250 0.93214 0.96438 0.92221 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.84 10.50 -19.66 -0.21 -4.05 16 3 C 0.08 1.11 6.69 -39.24 -0.26 0.84 16 4 C -0.17 -2.00 9.03 -39.45 -0.36 -2.36 16 5 C -0.18 -2.16 9.03 -39.45 -0.36 -2.51 16 6 C 0.12 1.76 6.66 -39.24 -0.26 1.50 16 7 O -0.30 -4.48 9.73 -19.69 -0.19 -4.67 16 8 C 0.03 0.30 9.81 101.05 0.99 1.29 16 9 C -0.06 -0.93 4.60 -104.49 -0.48 -1.41 16 10 C 0.10 1.68 4.76 -4.98 -0.02 1.65 16 11 N -0.53 -10.32 4.65 -236.11 -1.10 -11.42 16 12 C 0.06 1.16 5.26 -3.83 -0.02 1.14 16 13 C -0.12 -2.41 6.09 -26.65 -0.16 -2.57 16 14 C -0.11 -2.69 5.02 -26.61 -0.13 -2.83 16 15 C 0.06 1.44 2.26 -91.69 -0.21 1.23 16 16 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 17 C -0.51 -14.28 8.56 -34.44 -0.29 -14.58 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -25.77 11.35 55.43 0.63 -25.15 16 21 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 C 0.07 1.54 4.68 -3.83 -0.02 1.53 16 26 C -0.11 -1.51 8.50 -39.45 -0.34 -1.85 16 27 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.13 1.11 6.29 -52.49 -0.33 0.78 16 31 H 0.13 1.25 6.29 -52.49 -0.33 0.92 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 34 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 35 H 0.03 0.55 7.98 -51.93 -0.41 0.13 16 36 H 0.08 1.40 7.69 -51.93 -0.40 1.00 16 37 H 0.06 1.04 6.31 -51.93 -0.33 0.72 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 1.31 8.01 -51.93 -0.42 0.89 16 46 H 0.13 1.77 8.04 -52.49 -0.42 1.35 16 LS Contribution 361.74 15.07 5.45 5.45 Total: -1.00 -31.07 361.74 -8.93 -40.00 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.47 Total: -0.65 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -1.02 Total: -16.07 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.47 Total: -36.56 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.40 Total: -8.72 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.07 -8.93 -40.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397794600.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.153 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds