Wall clock time and date at job start Tue Mar 31 2020 10:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35975 * 117.00575 * 2 1 4 4 C 1.38723 * 119.99756 * 0.02562 * 3 2 1 5 5 C 1.38113 * 119.99936 * 179.70185 * 4 3 2 6 6 C 1.38716 * 119.99817 * 0.54816 * 5 4 3 7 7 O 1.35985 * 120.00147 * 179.72136 * 6 5 4 8 8 C 1.42901 * 116.99650 * 359.72908 * 7 6 5 9 9 C 1.38673 * 120.00239 * 359.45193 * 6 5 4 10 10 C 1.50702 * 120.00481 * 180.29882 * 9 6 5 11 11 N 1.46898 * 109.47235 * 79.99335 * 10 9 6 12 12 C 1.46847 * 110.99696 * 66.05264 * 11 10 9 13 13 C 1.53035 * 109.52332 * 185.83654 * 12 11 10 14 14 C 1.53119 * 109.27987 * 300.82310 * 13 12 11 15 15 C 1.53118 * 109.16436 * 57.65006 * 14 13 12 16 16 H 1.08998 * 109.49748 * 62.32726 * 15 14 13 17 17 C 1.50696 * 109.50252 * 182.40652 * 15 14 13 18 18 H 1.08002 * 119.99816 * 120.00639 * 17 15 14 19 19 C 1.37877 * 120.00213 * 299.99779 * 17 15 14 20 20 N 1.31507 * 119.99963 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 119.99972 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47110 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46838 * 120.00250 * 21 19 17 24 24 H 1.48496 * 109.47093 * 240.00196 * 21 19 17 25 25 C 1.46851 * 110.99970 * 190.26008 * 11 10 9 26 26 C 1.38155 * 119.99955 * 0.27031 * 9 6 5 27 27 H 1.08996 * 109.47396 * 300.00618 * 1 2 3 28 28 H 1.09005 * 109.46807 * 59.99903 * 1 2 3 29 29 H 1.08997 * 109.47645 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00014 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.00025 * 180.29303 * 5 4 3 32 32 H 1.09005 * 109.47329 * 179.97438 * 8 7 6 33 33 H 1.08996 * 109.47352 * 299.99791 * 8 7 6 34 34 H 1.08999 * 109.47144 * 59.99816 * 8 7 6 35 35 H 1.08999 * 109.47159 * 199.99891 * 10 9 6 36 36 H 1.09004 * 109.46692 * 319.99395 * 10 9 6 37 37 H 1.09000 * 109.46172 * 305.85418 * 12 11 10 38 38 H 1.09002 * 109.46581 * 65.82236 * 12 11 10 39 39 H 1.09005 * 109.50165 * 60.75650 * 13 12 11 40 40 H 1.09000 * 109.50535 * 180.87689 * 13 12 11 41 41 H 1.09000 * 109.52425 * 177.56267 * 14 13 12 42 42 H 1.09000 * 109.51817 * 297.68086 * 14 13 12 43 43 H 0.96996 * 120.00346 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.45995 * 294.17860 * 25 11 10 45 45 H 1.08994 * 109.46341 * 54.14577 * 25 11 10 46 46 H 1.07997 * 120.00394 * 179.97438 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9180 3.6055 0.0068 6 6 3.3033 3.6780 0.0010 7 8 3.9207 4.8896 0.0014 8 6 3.0808 6.0457 0.0019 9 6 4.0585 2.5150 0.0004 10 6 5.5635 2.5937 0.0010 11 7 6.0395 2.8587 1.3652 12 6 5.7487 1.7259 2.2533 13 6 6.1248 2.0932 3.6905 14 6 7.6144 2.4430 3.7496 15 6 7.8994 3.5932 2.7800 16 1 7.3393 4.4760 3.0881 17 6 9.3739 3.9045 2.7883 18 1 9.9485 3.8213 1.8776 19 6 9.9893 4.2957 3.9585 20 7 9.2897 4.3966 5.0674 21 14 11.8168 4.6823 3.9686 22 1 12.3702 4.4939 2.6034 23 1 12.0227 6.0895 4.3958 24 1 12.5102 3.7713 4.9143 25 6 7.4718 3.1825 1.3692 26 6 3.4313 1.2840 0.0000 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2124 2.3185 0.0005 31 1 1.3299 4.5113 0.0120 32 1 3.6987 6.9437 0.0026 33 1 2.4515 6.0380 -0.8880 34 1 2.4516 6.0373 0.8919 35 1 5.9769 1.6485 -0.3510 36 1 5.8853 3.3992 -0.6591 37 1 4.6856 1.4902 2.2050 38 1 6.3277 0.8583 1.9368 39 1 5.5363 2.9523 4.0125 40 1 5.9234 1.2467 4.3470 41 1 7.8772 2.7469 4.7628 42 1 8.2046 1.5716 3.4662 43 1 9.7227 4.6715 5.8907 44 1 8.0427 2.3080 1.0568 45 1 7.6603 4.0046 0.6788 46 1 4.0194 0.3782 -0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397794600.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:13 Heat of formation + Delta-G solvation = -68.242754 kcal Electronic energy + Delta-G solvation = -25684.874194 eV Core-core repulsion = 22153.221387 eV Total energy + Delta-G solvation = -3531.652807 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.50363 -39.92533 -39.58950 -37.36435 -35.62512 -33.87576 -32.11866 -31.50646 -30.66678 -28.34155 -27.67348 -26.95670 -26.87216 -23.75977 -23.23097 -23.06694 -21.80001 -20.32754 -18.93843 -18.45822 -18.28981 -17.71068 -16.91358 -16.65627 -16.36898 -16.16862 -15.80148 -15.66623 -15.38010 -15.05418 -14.90163 -14.53328 -14.32115 -14.07080 -13.75452 -13.60630 -13.45483 -13.27430 -12.89833 -12.85826 -12.68016 -12.52220 -12.47616 -12.36567 -12.23114 -11.83401 -11.71349 -11.59776 -11.35565 -11.25215 -10.85264 -10.64384 -10.36539 -9.90774 -9.06151 -8.61264 -8.05751 -6.19936 0.24571 0.53784 1.41316 1.42607 1.54468 2.39844 2.44613 2.58679 2.69072 3.20843 3.30503 3.73290 3.80873 4.11192 4.17604 4.24627 4.26616 4.31599 4.41104 4.45587 4.46697 4.47502 4.51438 4.55256 4.63936 4.71382 4.76107 4.78488 4.80754 4.90054 4.92148 4.99725 5.10640 5.18551 5.21364 5.30660 5.37794 5.40259 5.53932 5.65442 5.67087 5.99007 6.15260 6.23597 6.37427 6.43990 6.49657 6.65263 6.92754 7.47634 8.99136 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.003455 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.206077 B = 8101.713616 C = 8779.970185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.080 3.920 4 C -0.164 4.164 5 C -0.172 4.172 6 C 0.100 3.900 7 O -0.328 6.328 8 C 0.021 3.979 9 C -0.082 4.082 10 C 0.107 3.893 11 N -0.536 5.536 12 C 0.069 3.931 13 C -0.108 4.108 14 C -0.102 4.102 15 C 0.056 3.944 16 H -0.006 1.006 17 C -0.534 4.534 18 H 0.051 0.949 19 C 0.013 3.987 20 N -0.916 5.916 21 Si 0.956 3.044 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.084 3.916 26 C -0.118 4.118 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.116 0.884 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.027 0.973 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.024 0.976 43 H 0.260 0.740 44 H 0.016 0.984 45 H 0.055 0.945 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.369 -4.574 -11.652 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.036 3.964 4 C -0.183 4.183 5 C -0.191 4.191 6 C 0.055 3.945 7 O -0.242 6.242 8 C -0.074 4.074 9 C -0.083 4.083 10 C -0.020 4.020 11 N -0.260 5.260 12 C -0.058 4.058 13 C -0.146 4.146 14 C -0.140 4.140 15 C 0.037 3.963 16 H 0.013 0.987 17 C -0.572 4.572 18 H 0.070 0.930 19 C -0.186 4.186 20 N -0.555 5.555 21 Si 0.781 3.219 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.043 4.043 26 C -0.137 4.137 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.134 0.866 30 H 0.175 0.825 31 H 0.172 0.828 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.042 0.958 43 H 0.069 0.931 44 H 0.034 0.966 45 H 0.073 0.927 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.309 -4.257 -11.302 23.629 hybrid contribution 1.186 -0.045 0.099 1.191 sum -19.123 -4.302 -11.203 22.576 Atomic orbital electron populations 1.23309 0.76652 1.05405 1.02160 1.86049 1.23263 1.26468 1.89369 1.18886 0.91914 0.85030 1.00609 1.21273 1.01133 0.90867 1.05040 1.21274 0.92462 0.99625 1.05699 1.18903 0.91340 0.85469 0.98835 1.86193 1.36564 1.12772 1.88636 1.23246 0.96115 0.86040 1.01954 1.18911 0.94999 0.90519 1.03872 1.20778 0.90554 1.00345 0.90358 1.61895 1.16829 1.39048 1.08240 1.21988 1.00123 0.90888 0.92837 1.21564 0.97006 1.00164 0.95889 1.21449 0.93426 0.97090 1.02036 1.18552 0.93822 0.93380 0.90556 0.98750 1.21545 0.95175 1.45482 0.95042 0.93035 1.25732 1.02255 0.95278 0.95300 1.70048 1.37070 1.48334 1.00085 0.85547 0.80435 0.77709 0.78191 1.19149 1.20629 1.20588 1.21967 0.85679 0.97802 0.98862 1.20187 0.92157 0.97005 1.04333 0.91945 0.91568 0.86585 0.82507 0.82844 0.87724 0.91070 0.92250 0.93799 0.90395 0.90505 0.95528 0.93617 0.91401 0.92325 0.95762 0.93107 0.96555 0.92671 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.29 10.50 -93.27 -0.98 -8.27 16 3 C 0.08 1.92 6.69 22.49 0.15 2.07 16 4 C -0.16 -3.31 9.03 22.36 0.20 -3.11 16 5 C -0.17 -3.79 9.03 22.35 0.20 -3.59 16 6 C 0.10 2.86 6.66 22.49 0.15 3.01 16 7 O -0.33 -9.84 9.73 -93.38 -0.91 -10.74 16 8 C 0.02 0.42 9.81 113.37 1.11 1.53 16 9 C -0.08 -2.45 4.60 -19.78 -0.09 -2.54 16 10 C 0.11 3.55 4.76 85.56 0.41 3.95 16 11 N -0.54 -21.21 4.65 -900.92 -4.19 -25.39 16 12 C 0.07 2.59 5.26 86.33 0.45 3.04 16 13 C -0.11 -4.52 6.09 30.65 0.19 -4.34 16 14 C -0.10 -5.13 5.02 30.67 0.15 -4.98 16 15 C 0.06 2.98 2.26 -11.49 -0.03 2.95 16 16 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 17 C -0.53 -30.63 8.56 25.60 0.22 -30.41 16 18 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 19 C 0.01 0.74 5.30 84.66 0.45 1.18 16 20 N -0.92 -54.56 11.35 21.45 0.24 -54.32 16 21 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 25 C 0.08 3.82 4.68 86.32 0.40 4.22 16 26 C -0.12 -3.18 8.50 22.35 0.19 -2.99 16 27 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 28 H 0.07 0.61 7.66 -2.38 -0.02 0.59 16 29 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.16 2.09 6.29 -2.91 -0.02 2.07 16 31 H 0.15 2.48 6.29 -2.91 -0.02 2.47 16 32 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.07 1.05 7.67 -2.39 -0.02 1.03 16 34 H 0.06 1.06 7.65 -2.39 -0.02 1.05 16 35 H 0.04 1.36 7.98 -2.39 -0.02 1.34 16 36 H 0.08 2.64 7.69 -2.39 -0.02 2.62 16 37 H 0.08 2.63 6.31 -2.39 -0.02 2.61 16 38 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.06 3.31 6.15 -2.39 -0.01 3.30 16 42 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 44 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.05 2.50 8.01 -2.39 -0.02 2.48 16 46 H 0.13 3.45 8.04 -2.91 -0.02 3.43 16 Total: -1.00 -68.62 361.74 2.43 -66.20 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.95 Total: 14.37 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 5.28 Total: -28.64 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -3.94 Total: -79.71 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -1.89 Total: -19.01 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -68.62 2.43 -66.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397794600.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.047 kcal (2) G-P(sol) polarization free energy of solvation -68.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds