Wall clock time and date at job start Tue Mar 31 2020 10:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 110.99979 * 2 1 4 4 C 1.50698 * 109.47031 * 293.95719 * 3 2 1 5 5 H 1.07998 * 120.00242 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99936 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00133 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00016 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.47435 * 89.99364 * 8 6 4 10 10 H 1.48502 * 109.46945 * 209.99832 * 8 6 4 11 11 H 1.48503 * 109.46721 * 329.99459 * 8 6 4 12 12 C 1.46898 * 111.00275 * 123.95569 * 2 1 3 13 13 C 1.53006 * 109.46894 * 164.00895 * 12 2 1 14 14 H 1.09000 * 109.46891 * 58.51089 * 13 12 2 15 15 O 1.42899 * 109.47289 * 298.50895 * 13 12 2 16 16 C 1.53002 * 109.46931 * 178.50836 * 13 12 2 17 17 O 1.42902 * 109.47260 * 185.00003 * 16 13 12 18 18 C 1.35897 * 117.00177 * 180.02562 * 17 16 13 19 19 C 1.38747 * 120.09244 * 0.02562 * 18 17 16 20 20 C 1.38000 * 119.88053 * 179.97438 * 19 18 17 21 21 C 1.38551 * 120.28962 * 0.02562 * 20 19 18 22 22 C 1.38258 * 119.93565 * 359.97438 * 21 20 19 23 23 C 1.38414 * 119.90459 * 359.74963 * 22 21 20 24 24 C 1.51376 * 109.75331 * 180.02562 * 22 21 20 25 25 C 1.54337 * 105.17370 * 17.20505 * 24 22 21 26 26 C 1.51384 * 130.32284 * 180.02562 * 21 20 19 27 27 H 1.09004 * 109.46694 * 301.52499 * 1 2 3 28 28 H 1.08995 * 109.47176 * 61.52989 * 1 2 3 29 29 H 1.09001 * 109.46517 * 181.53311 * 1 2 3 30 30 H 1.08993 * 109.47192 * 53.95612 * 3 2 1 31 31 H 1.09000 * 109.47302 * 173.95854 * 3 2 1 32 32 H 0.97001 * 120.00323 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47167 * 44.01239 * 12 2 1 34 34 H 1.08997 * 109.47112 * 284.00680 * 12 2 1 35 35 H 0.96702 * 114.00037 * 300.00293 * 15 13 12 36 36 H 1.09001 * 109.47262 * 65.00208 * 16 13 12 37 37 H 1.09001 * 109.47128 * 305.00216 * 16 13 12 38 38 H 1.08003 * 120.06157 * 359.97438 * 19 18 17 39 39 H 1.07997 * 119.85704 * 179.97438 * 20 19 18 40 40 H 1.07997 * 119.91261 * 180.27357 * 23 22 21 41 41 H 1.08998 * 110.30205 * 136.13057 * 24 22 21 42 42 H 1.09007 * 110.30541 * 258.17911 * 24 22 21 43 43 H 1.09006 * 110.81865 * 91.85432 * 25 24 22 44 44 H 1.08995 * 110.82365 * 215.20201 * 25 24 22 45 45 H 1.09009 * 110.30101 * 281.69857 * 26 21 20 46 46 H 1.09004 * 110.30626 * 43.84692 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 -1.2984 5 1 1.0738 1.5115 -2.0484 6 6 2.0267 3.3495 -1.5284 7 7 1.7142 3.9391 -2.6617 8 14 2.9999 4.2762 -0.2309 9 1 4.4523 4.0637 -0.4558 10 1 2.6917 5.7260 -0.3226 11 1 2.6293 3.7756 1.1171 12 6 1.9955 -0.7660 1.1375 13 6 3.4729 -1.0839 0.8982 14 1 4.0282 -0.1549 0.7695 15 8 3.6034 -1.8838 -0.2788 16 6 4.0309 -1.8495 2.0996 17 8 5.4363 -2.0447 1.9292 18 6 6.0903 -2.7136 2.9149 19 6 5.3944 -3.1735 4.0236 20 6 6.0629 -3.8527 5.0217 21 6 7.4265 -4.0771 4.9220 22 6 8.1220 -3.6198 3.8181 23 6 7.4533 -2.9433 2.8127 24 6 9.5846 -3.9888 3.9460 25 6 9.6299 -5.0930 5.0234 26 6 8.3744 -4.7849 5.8665 27 1 -0.3633 0.5374 0.8760 28 1 -0.3633 0.4899 -0.9033 29 1 -0.3632 -1.0273 0.0275 30 1 1.5612 1.9273 0.8309 31 1 3.0797 1.3444 0.1082 32 1 1.9887 4.8552 -2.8238 33 1 1.4358 -1.6957 1.2398 34 1 1.8935 -0.1782 2.0497 35 1 3.1334 -2.7278 -0.2349 36 1 3.5362 -2.8178 2.1751 37 1 3.8513 -1.2777 3.0101 38 1 4.3315 -3.0003 4.1054 39 1 5.5210 -4.2102 5.8848 40 1 7.9957 -2.5899 1.9483 41 1 9.9627 -4.3702 2.9975 42 1 10.1665 -3.1238 4.2641 43 1 9.5582 -6.0811 4.5688 44 1 10.5347 -5.0100 5.6254 45 1 8.6307 -4.1344 6.7029 46 1 7.9263 -5.7099 6.2294 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414162280.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:34 Heat of formation + Delta-G solvation = -59.776190 kcal Electronic energy + Delta-G solvation = -24431.255828 eV Core-core repulsion = 20899.970158 eV Total energy + Delta-G solvation = -3531.285670 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.64538 -39.05436 -37.65195 -35.62067 -34.85958 -32.44596 -31.73768 -30.47588 -28.68895 -28.11553 -27.55340 -26.15294 -23.64110 -23.06803 -21.86713 -21.08565 -20.75467 -20.02606 -17.81669 -16.99658 -16.67830 -16.39851 -15.92330 -15.90096 -15.20294 -14.91360 -14.76403 -14.46241 -14.16562 -13.95324 -13.60888 -13.20779 -13.18059 -12.95768 -12.64346 -12.56477 -12.31696 -12.21426 -11.80346 -11.65891 -11.50007 -11.43681 -11.40009 -11.11743 -10.99696 -10.68636 -10.67331 -10.51642 -10.21791 -9.92111 -9.74809 -9.24370 -8.98831 -8.54712 -8.15382 -7.40715 -6.03231 -4.00195 1.12538 1.25620 2.97781 3.29816 3.36616 3.37351 3.52768 4.16765 4.27789 4.43092 4.50734 4.62180 4.66458 4.68735 4.78870 4.94846 5.02194 5.05215 5.09771 5.18787 5.27817 5.32454 5.35074 5.37943 5.41584 5.46643 5.48491 5.58874 5.65640 5.79071 5.81684 5.95374 5.97130 6.10016 6.19098 6.20469 6.23555 6.44396 6.57515 6.63197 6.82026 6.93921 7.33345 7.57834 7.82806 7.98289 8.02062 8.66224 9.05654 9.58143 11.09971 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.002636 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.844225 B =10621.147655 C =11263.439152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.521 5.521 3 C 0.160 3.840 4 C -0.506 4.506 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.873 3.127 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.026 3.974 13 C 0.116 3.884 14 H 0.111 0.889 15 O -0.530 6.530 16 C 0.029 3.971 17 O -0.299 6.299 18 C 0.137 3.863 19 C -0.211 4.211 20 C -0.067 4.067 21 C -0.143 4.143 22 C -0.059 4.059 23 C -0.142 4.142 24 C -0.083 4.083 25 C -0.120 4.120 26 C -0.076 4.076 27 H 0.012 0.988 28 H 0.081 0.919 29 H 0.047 0.953 30 H -0.013 1.013 31 H 0.025 0.975 32 H 0.263 0.737 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.364 0.636 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.121 -19.027 18.676 28.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.244 5.244 3 C 0.034 3.966 4 C -0.545 4.545 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.700 3.300 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.194 1.194 12 C -0.103 4.103 13 C 0.055 3.945 14 H 0.129 0.871 15 O -0.333 6.333 16 C -0.047 4.047 17 O -0.212 6.212 18 C 0.091 3.909 19 C -0.230 4.230 20 C -0.085 4.085 21 C -0.144 4.144 22 C -0.060 4.060 23 C -0.161 4.161 24 C -0.120 4.120 25 C -0.158 4.158 26 C -0.113 4.113 27 H 0.030 0.970 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.005 0.995 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.210 0.790 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.147 0.853 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.720 -18.474 17.753 28.175 hybrid contribution -0.413 0.637 1.800 1.954 sum 11.308 -17.836 19.553 28.781 Atomic orbital electron populations 1.22239 0.87787 0.99370 1.01489 1.61823 1.07213 1.16575 1.38813 1.20262 0.95041 0.83900 0.97418 1.20996 1.35570 0.97083 1.00809 0.90065 1.24896 0.95784 0.97382 0.95279 1.69888 1.46933 1.13281 1.23789 0.86901 0.81129 0.79332 0.82649 1.19989 1.21158 1.19411 1.22626 0.94825 0.98957 0.93916 1.21947 0.94983 0.94616 0.82930 0.87142 1.86746 1.75358 1.33345 1.37846 1.23703 0.79445 1.00697 1.00859 1.86184 1.22209 1.70769 1.42076 1.18888 0.91913 0.92277 0.87835 1.21152 1.00488 1.05495 0.95844 1.20359 0.92987 0.97222 0.97975 1.20457 0.93765 1.02789 0.97362 1.20314 0.95871 0.96186 0.93582 1.19821 0.91535 1.04009 1.00703 1.21069 0.92090 0.98877 0.99938 1.22288 0.97826 0.98753 0.96912 1.20950 0.93791 0.99570 0.96976 0.96959 0.90019 0.93447 0.99491 0.95701 0.92670 0.91278 0.94734 0.79020 0.91760 0.91329 0.85350 0.86139 0.85260 0.90463 0.89961 0.90949 0.90556 0.90590 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.32 60.06 0.56 1.30 16 2 N -0.52 -10.76 4.60 -244.38 -1.12 -11.89 16 3 C 0.16 3.91 3.64 -4.98 -0.02 3.89 16 4 C -0.51 -14.61 9.09 -34.44 -0.31 -14.92 16 5 H 0.08 2.55 7.34 -52.49 -0.39 2.16 16 6 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 7 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 8 Si 0.87 21.81 27.47 -169.99 -4.67 17.14 16 9 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 12 C 0.03 0.41 4.63 -3.82 -0.02 0.40 16 13 C 0.12 1.82 3.27 -26.73 -0.09 1.73 16 14 H 0.11 2.05 6.55 -51.93 -0.34 1.71 16 15 O -0.53 -8.99 13.20 -40.08 -0.53 -9.52 16 16 C 0.03 0.36 4.38 37.16 0.16 0.53 16 17 O -0.30 -4.41 10.10 -24.26 -0.25 -4.66 16 18 C 0.14 1.80 6.68 -39.26 -0.26 1.54 16 19 C -0.21 -2.37 9.04 -39.48 -0.36 -2.72 16 20 C -0.07 -0.68 10.03 -39.55 -0.40 -1.07 16 21 C -0.14 -1.43 6.14 -104.16 -0.64 -2.07 16 22 C -0.06 -0.63 6.13 -104.22 -0.64 -1.27 16 23 C -0.14 -1.76 9.98 -39.39 -0.39 -2.15 16 24 C -0.08 -0.64 6.77 -26.85 -0.18 -0.82 16 25 C -0.12 -0.75 7.08 -25.33 -0.18 -0.93 16 26 C -0.08 -0.54 6.77 -26.85 -0.18 -0.73 16 27 H 0.01 0.22 8.13 -51.93 -0.42 -0.21 16 28 H 0.08 1.71 6.90 -51.93 -0.36 1.35 16 29 H 0.05 0.73 7.97 -51.93 -0.41 0.32 16 30 H -0.01 -0.31 7.17 -51.93 -0.37 -0.68 16 31 H 0.03 0.62 5.81 -51.93 -0.30 0.32 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16 34 H 0.03 0.53 8.05 -51.93 -0.42 0.11 16 35 H 0.36 4.54 9.05 45.56 0.41 4.95 16 36 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 37 H 0.07 0.77 7.67 -51.93 -0.40 0.37 16 38 H 0.13 1.23 6.31 -52.48 -0.33 0.89 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 368.26 15.07 5.55 5.55 Total: -1.00 -33.79 368.26 -9.97 -43.76 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.69 Total: 2.16 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -3.04 Total: -15.40 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: -0.35 Total: -39.04 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.77 Total: -14.17 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.79 -9.97 -43.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414162280.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.012 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds