Wall clock time and date at job start Tue Mar 31 2020 10:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 110.99979 * 2 1 4 4 C 1.50698 * 109.47031 * 293.95719 * 3 2 1 5 5 H 1.07998 * 120.00242 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99936 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00133 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00016 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.47435 * 89.99364 * 8 6 4 10 10 H 1.48502 * 109.46945 * 209.99832 * 8 6 4 11 11 H 1.48503 * 109.46721 * 329.99459 * 8 6 4 12 12 C 1.46898 * 111.00275 * 123.95569 * 2 1 3 13 13 C 1.53006 * 109.46894 * 164.00895 * 12 2 1 14 14 H 1.09000 * 109.46891 * 58.51089 * 13 12 2 15 15 O 1.42899 * 109.47289 * 298.50895 * 13 12 2 16 16 C 1.53002 * 109.46931 * 178.50836 * 13 12 2 17 17 O 1.42902 * 109.47260 * 185.00003 * 16 13 12 18 18 C 1.35897 * 117.00177 * 180.02562 * 17 16 13 19 19 C 1.38747 * 120.09244 * 0.02562 * 18 17 16 20 20 C 1.38000 * 119.88053 * 179.97438 * 19 18 17 21 21 C 1.38551 * 120.28962 * 0.02562 * 20 19 18 22 22 C 1.38258 * 119.93565 * 359.97438 * 21 20 19 23 23 C 1.38414 * 119.90459 * 359.74963 * 22 21 20 24 24 C 1.51376 * 109.75331 * 180.02562 * 22 21 20 25 25 C 1.54337 * 105.17370 * 17.20505 * 24 22 21 26 26 C 1.51384 * 130.32284 * 180.02562 * 21 20 19 27 27 H 1.09004 * 109.46694 * 301.52499 * 1 2 3 28 28 H 1.08995 * 109.47176 * 61.52989 * 1 2 3 29 29 H 1.09001 * 109.46517 * 181.53311 * 1 2 3 30 30 H 1.08993 * 109.47192 * 53.95612 * 3 2 1 31 31 H 1.09000 * 109.47302 * 173.95854 * 3 2 1 32 32 H 0.97001 * 120.00323 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47167 * 44.01239 * 12 2 1 34 34 H 1.08997 * 109.47112 * 284.00680 * 12 2 1 35 35 H 0.96702 * 114.00037 * 300.00293 * 15 13 12 36 36 H 1.09001 * 109.47262 * 65.00208 * 16 13 12 37 37 H 1.09001 * 109.47128 * 305.00216 * 16 13 12 38 38 H 1.08003 * 120.06157 * 359.97438 * 19 18 17 39 39 H 1.07997 * 119.85704 * 179.97438 * 20 19 18 40 40 H 1.07997 * 119.91261 * 180.27357 * 23 22 21 41 41 H 1.08998 * 110.30205 * 136.13057 * 24 22 21 42 42 H 1.09007 * 110.30541 * 258.17911 * 24 22 21 43 43 H 1.09006 * 110.81865 * 91.85432 * 25 24 22 44 44 H 1.08995 * 110.82365 * 215.20201 * 25 24 22 45 45 H 1.09009 * 110.30101 * 281.69857 * 26 21 20 46 46 H 1.09004 * 110.30626 * 43.84692 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 -1.2984 5 1 1.0738 1.5115 -2.0484 6 6 2.0267 3.3495 -1.5284 7 7 1.7142 3.9391 -2.6617 8 14 2.9999 4.2762 -0.2309 9 1 4.4523 4.0637 -0.4558 10 1 2.6917 5.7260 -0.3226 11 1 2.6293 3.7756 1.1171 12 6 1.9955 -0.7660 1.1375 13 6 3.4729 -1.0839 0.8982 14 1 4.0282 -0.1549 0.7695 15 8 3.6034 -1.8838 -0.2788 16 6 4.0309 -1.8495 2.0996 17 8 5.4363 -2.0447 1.9292 18 6 6.0903 -2.7136 2.9149 19 6 5.3944 -3.1735 4.0236 20 6 6.0629 -3.8527 5.0217 21 6 7.4265 -4.0771 4.9220 22 6 8.1220 -3.6198 3.8181 23 6 7.4533 -2.9433 2.8127 24 6 9.5846 -3.9888 3.9460 25 6 9.6299 -5.0930 5.0234 26 6 8.3744 -4.7849 5.8665 27 1 -0.3633 0.5374 0.8760 28 1 -0.3633 0.4899 -0.9033 29 1 -0.3632 -1.0273 0.0275 30 1 1.5612 1.9273 0.8309 31 1 3.0797 1.3444 0.1082 32 1 1.9887 4.8552 -2.8238 33 1 1.4358 -1.6957 1.2398 34 1 1.8935 -0.1782 2.0497 35 1 3.1334 -2.7278 -0.2349 36 1 3.5362 -2.8178 2.1751 37 1 3.8513 -1.2777 3.0101 38 1 4.3315 -3.0003 4.1054 39 1 5.5210 -4.2102 5.8848 40 1 7.9957 -2.5899 1.9483 41 1 9.9627 -4.3702 2.9975 42 1 10.1665 -3.1238 4.2641 43 1 9.5582 -6.0811 4.5688 44 1 10.5347 -5.0100 5.6254 45 1 8.6307 -4.1344 6.7029 46 1 7.9263 -5.7099 6.2294 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414162280.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:33 Heat of formation + Delta-G solvation = -83.777981 kcal Electronic energy + Delta-G solvation = -24432.296624 eV Core-core repulsion = 20899.970158 eV Total energy + Delta-G solvation = -3532.326465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.46600 -40.01323 -38.91429 -37.04312 -35.63594 -34.61692 -32.57577 -31.65430 -30.05089 -29.38595 -28.43982 -27.25250 -25.29477 -23.95792 -23.14355 -21.73511 -21.68302 -21.51925 -19.12008 -18.63525 -17.83492 -17.52136 -16.86446 -16.63547 -16.48192 -16.25859 -15.90302 -15.67830 -15.47267 -15.32188 -14.74507 -14.52306 -14.38421 -14.26633 -13.71987 -13.52796 -13.44737 -13.24829 -13.07334 -12.85930 -12.66286 -12.50813 -12.42823 -12.28606 -12.14315 -12.01382 -11.89359 -11.76738 -11.60417 -11.42616 -11.36539 -10.93711 -10.79492 -9.78737 -9.00319 -8.97444 -8.30037 -6.32691 0.32893 0.43258 1.30920 1.33000 1.42197 2.03103 2.31549 2.72471 3.02639 3.17240 3.51498 3.58863 3.66924 3.81813 3.87330 3.95121 4.09725 4.17336 4.20124 4.27459 4.30769 4.36668 4.41446 4.48232 4.54443 4.60775 4.67905 4.73437 4.86119 4.87472 4.95200 4.96028 5.02791 5.04293 5.06748 5.20000 5.23657 5.31955 5.37465 5.42158 5.53218 5.67674 5.81942 5.95138 6.34341 6.44543 6.62584 6.73447 6.97146 7.30201 8.86780 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.002636 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.844225 B =10621.147655 C =11263.439152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.544 5.544 3 C 0.171 3.829 4 C -0.514 4.514 5 H 0.038 0.962 6 C 0.006 3.994 7 N -0.948 5.948 8 Si 0.944 3.056 9 H -0.270 1.270 10 H -0.278 1.278 11 H -0.249 1.249 12 C 0.030 3.970 13 C 0.117 3.883 14 H 0.073 0.927 15 O -0.559 6.559 16 C 0.038 3.962 17 O -0.329 6.329 18 C 0.111 3.889 19 C -0.214 4.214 20 C -0.072 4.072 21 C -0.149 4.149 22 C -0.071 4.071 23 C -0.167 4.167 24 C -0.086 4.086 25 C -0.115 4.115 26 C -0.075 4.075 27 H 0.021 0.979 28 H 0.044 0.956 29 H 0.086 0.914 30 H -0.010 1.010 31 H 0.022 0.978 32 H 0.267 0.733 33 H 0.108 0.892 34 H 0.049 0.951 35 H 0.383 0.617 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.119 0.881 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.842 -20.842 22.443 32.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.267 5.267 3 C 0.044 3.956 4 C -0.553 4.553 5 H 0.056 0.944 6 C -0.191 4.191 7 N -0.589 5.589 8 Si 0.767 3.233 9 H -0.195 1.195 10 H -0.204 1.204 11 H -0.172 1.172 12 C -0.099 4.099 13 C 0.057 3.943 14 H 0.091 0.909 15 O -0.365 6.365 16 C -0.038 4.038 17 O -0.243 6.243 18 C 0.066 3.934 19 C -0.233 4.233 20 C -0.090 4.090 21 C -0.149 4.149 22 C -0.071 4.071 23 C -0.185 4.185 24 C -0.123 4.123 25 C -0.153 4.153 26 C -0.112 4.112 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.008 0.992 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.126 0.874 34 H 0.067 0.933 35 H 0.231 0.769 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.137 0.863 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.429 -20.327 21.540 32.119 hybrid contribution -0.650 1.085 0.565 1.385 sum 11.779 -19.243 22.105 31.586 Atomic orbital electron populations 1.22202 0.86748 1.01514 1.00055 1.61655 1.08368 1.14600 1.42122 1.19972 0.94894 0.86032 0.94711 1.21270 1.34723 0.97373 1.01900 0.94418 1.25854 0.97030 0.98528 0.97705 1.70046 1.48681 1.13919 1.26215 0.85769 0.79303 0.77902 0.80330 1.19491 1.20356 1.17236 1.22711 0.94906 0.99904 0.92366 1.21814 0.94827 0.93725 0.83944 0.90887 1.86690 1.76116 1.34678 1.38982 1.23596 0.78870 1.01851 0.99473 1.86120 1.23255 1.71623 1.43331 1.19107 0.92274 0.93472 0.88505 1.21375 1.01360 1.05227 0.95315 1.20726 0.93328 0.96541 0.98405 1.20937 0.94250 1.02135 0.97565 1.20690 0.97514 0.95608 0.93301 1.19994 0.91881 1.05307 1.01362 1.21184 0.90388 0.99804 1.00885 1.22321 0.98374 0.98181 0.96384 1.21043 0.93426 1.00037 0.96712 0.96042 0.93664 0.89582 0.99247 0.95997 0.92440 0.87405 0.93329 0.76883 0.88913 0.89765 0.83627 0.83534 0.86266 0.90179 0.89311 0.90571 0.88546 0.89546 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 9.32 127.69 1.19 2.74 16 2 N -0.54 -22.06 4.60 -927.07 -4.27 -26.33 16 3 C 0.17 8.37 3.64 85.56 0.31 8.68 16 4 C -0.51 -30.71 9.09 25.60 0.23 -30.48 16 5 H 0.04 2.51 7.34 -2.91 -0.02 2.49 16 6 C 0.01 0.36 5.47 84.66 0.46 0.82 16 7 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 8 Si 0.94 45.41 27.47 68.60 1.88 47.29 16 9 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 12 C 0.03 0.86 4.63 86.31 0.40 1.26 16 13 C 0.12 3.57 3.27 30.60 0.10 3.67 16 14 H 0.07 2.76 6.55 -2.39 -0.02 2.74 16 15 O -0.56 -18.73 13.20 -144.35 -1.90 -20.63 16 16 C 0.04 0.87 4.38 71.98 0.31 1.18 16 17 O -0.33 -9.66 10.10 -87.76 -0.89 -10.54 16 18 C 0.11 2.89 6.68 22.48 0.15 3.04 16 19 C -0.21 -4.38 9.04 22.33 0.20 -4.18 16 20 C -0.07 -1.27 10.03 22.29 0.22 -1.04 16 21 C -0.15 -2.65 6.14 -19.57 -0.12 -2.77 16 22 C -0.07 -1.45 6.13 -19.60 -0.12 -1.57 16 23 C -0.17 -4.20 9.98 22.40 0.22 -3.98 16 24 C -0.09 -1.20 6.77 30.52 0.21 -0.99 16 25 C -0.12 -1.11 7.08 31.50 0.22 -0.89 16 26 C -0.08 -0.85 6.77 30.52 0.21 -0.64 16 27 H 0.02 0.73 8.13 -2.39 -0.02 0.71 16 28 H 0.04 1.94 6.90 -2.39 -0.02 1.93 16 29 H 0.09 2.42 7.97 -2.39 -0.02 2.40 16 30 H -0.01 -0.48 7.17 -2.39 -0.02 -0.50 16 31 H 0.02 1.09 5.81 -2.39 -0.01 1.08 16 32 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 33 H 0.11 2.31 7.88 -2.39 -0.02 2.29 16 34 H 0.05 1.31 8.05 -2.39 -0.02 1.29 16 35 H 0.38 9.02 9.05 -74.06 -0.67 8.35 16 36 H 0.09 1.59 7.66 -2.39 -0.02 1.57 16 37 H 0.08 1.66 7.67 -2.39 -0.02 1.64 16 38 H 0.15 2.33 6.31 -2.91 -0.02 2.31 16 39 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.12 3.05 8.06 -2.91 -0.02 3.02 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -77.05 368.26 -0.42 -77.47 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.24 Total: 18.42 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 4.21 Total: -25.14 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -3.97 Total: -86.88 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -2.79 Total: -31.17 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Total: -77.05 -0.42 -77.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414162280.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.305 kcal (2) G-P(sol) polarization free energy of solvation -77.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds