Wall clock time and date at job start Tue Mar 31 2020 10:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45208 * 109.46646 * 2 1 4 4 C 1.34235 * 116.99219 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00319 * 359.72144 * 4 3 2 6 6 C 1.50699 * 119.99402 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.47475 * 299.72037 * 6 4 3 8 8 N 1.46897 * 109.47103 * 179.72153 * 6 4 3 9 9 C 1.46907 * 110.99934 * 84.99800 * 8 6 4 10 10 C 1.52998 * 109.46939 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47411 * 300.00001 * 10 9 8 12 12 C 1.52998 * 109.47129 * 60.00295 * 10 9 8 13 13 C 1.50695 * 109.46986 * 180.02562 * 10 9 8 14 14 H 1.08002 * 120.00395 * 1.23871 * 13 10 9 15 15 C 1.37877 * 120.00249 * 181.24535 * 13 10 9 16 16 N 1.31517 * 119.99965 * 194.11213 * 15 13 10 17 17 Si 1.86794 * 120.00054 * 14.10764 * 15 13 10 18 18 H 1.48509 * 109.47045 * 84.53910 * 17 15 13 19 19 H 1.48506 * 109.47527 * 204.53647 * 17 15 13 20 20 H 1.48501 * 109.47189 * 324.53903 * 17 15 13 21 21 C 1.50695 * 109.47290 * 59.72345 * 6 4 3 22 22 C 1.38240 * 120.00487 * 79.72555 * 21 6 4 23 23 C 1.38224 * 120.00367 * 179.81069 * 22 21 6 24 24 C 1.38240 * 120.00381 * 0.39726 * 23 22 21 25 25 C 1.38233 * 119.99260 * 359.85454 * 24 23 22 26 26 C 1.38233 * 120.00461 * 359.96063 * 25 24 23 27 27 H 1.08999 * 109.47224 * 60.00094 * 1 2 3 28 28 H 1.08997 * 109.46867 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47184 * 300.00490 * 1 2 3 30 30 H 1.08996 * 109.47260 * 240.00294 * 2 1 3 31 31 H 1.08997 * 109.46748 * 119.99702 * 2 1 3 32 32 H 1.00894 * 111.00571 * 208.95117 * 8 6 4 33 33 H 1.08995 * 109.47087 * 300.00050 * 9 8 6 34 34 H 1.08997 * 109.46849 * 60.00570 * 9 8 6 35 35 H 1.08998 * 109.46748 * 69.52038 * 11 10 9 36 36 H 1.08999 * 109.46983 * 189.51922 * 11 10 9 37 37 H 1.08997 * 109.46920 * 309.51621 * 11 10 9 38 38 H 1.09005 * 109.47485 * 59.99681 * 12 10 9 39 39 H 1.09005 * 109.47083 * 179.97438 * 12 10 9 40 40 H 1.09001 * 109.47060 * 299.99599 * 12 10 9 41 41 H 0.97008 * 120.00168 * 179.97438 * 16 15 13 42 42 H 1.08003 * 119.99352 * 0.02562 * 22 21 6 43 43 H 1.08001 * 120.00230 * 180.22951 * 23 22 21 44 44 H 1.07998 * 120.00412 * 179.83906 * 24 23 22 45 45 H 1.08008 * 119.99733 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.00181 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 0.0041 6 6 3.9207 2.9375 0.0000 7 1 3.5883 3.4685 -0.8919 8 7 5.3876 2.8607 0.0060 9 6 5.9126 2.7120 -1.3580 10 6 7.4399 2.6350 -1.3110 11 6 7.9963 3.9165 -0.6873 12 6 7.8641 1.4313 -0.4673 13 6 7.9784 2.4831 -2.7102 14 1 7.3006 2.4654 -3.5509 15 6 9.3366 2.3666 -2.9174 16 7 9.8322 2.5125 -4.1269 17 14 10.4726 2.0018 -1.4803 18 1 10.5171 0.5363 -1.2441 19 1 11.8386 2.4946 -1.7914 20 1 9.9656 2.6843 -0.2627 21 6 3.4513 3.6747 1.2276 22 6 4.0663 3.4515 2.4454 23 6 3.6383 4.1306 3.5707 24 6 2.5899 5.0271 3.4800 25 6 1.9716 5.2465 2.2633 26 6 2.4020 4.5701 1.1372 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.7901 3.6654 0.4625 33 1 5.5166 1.7988 -1.8022 34 1 5.6100 3.5694 -1.9592 35 1 7.7467 3.9423 0.3734 36 1 9.0795 3.9379 -0.8063 37 1 7.5590 4.7822 -1.1847 38 1 7.4678 0.5182 -0.9117 39 1 8.9523 1.3761 -0.4342 40 1 7.4747 1.5416 0.5448 41 1 10.7878 2.4309 -4.2726 42 1 4.8834 2.7489 2.5169 43 1 4.1212 3.9589 4.5213 44 1 2.2538 5.5558 4.3597 45 1 1.1522 5.9466 2.1925 46 1 1.9186 4.7413 0.1867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419347637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:13 Heat of formation + Delta-G solvation = -42.670245 kcal Electronic energy + Delta-G solvation = -25826.798814 eV Core-core repulsion = 22296.254914 eV Total energy + Delta-G solvation = -3530.543900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.56201 -39.18271 -37.37551 -36.26475 -34.50438 -32.04349 -31.62703 -31.02313 -30.52094 -27.03827 -26.14143 -25.14648 -24.18919 -23.14829 -22.51315 -22.04752 -20.32872 -18.83772 -17.76951 -16.94784 -16.47896 -16.21036 -15.93490 -15.55249 -15.32494 -14.79987 -14.55221 -14.09938 -13.76058 -13.57372 -13.39874 -12.99009 -12.91486 -12.81034 -12.74456 -12.54945 -12.35877 -11.94765 -11.88610 -11.78672 -11.66448 -11.25511 -11.17444 -10.85203 -10.48959 -10.40177 -10.19923 -10.04887 -9.97853 -9.81997 -9.00890 -8.94848 -8.85543 -8.51421 -8.33286 -8.07336 -6.04878 -4.00341 1.15789 1.31576 2.45910 2.68509 3.36899 3.46412 3.49038 3.67391 4.42724 4.48031 4.56715 4.79706 4.82821 4.86656 4.89546 4.96145 5.04987 5.17707 5.23543 5.28780 5.40158 5.52736 5.58132 5.64187 5.80005 5.82308 5.93748 5.98757 6.09554 6.31633 6.33840 6.40746 6.42396 6.52514 6.54550 6.66157 6.70063 6.87233 6.89350 6.96901 7.08053 7.30714 7.40212 7.59574 7.71951 7.92437 8.04460 8.57558 8.99355 9.61340 11.08444 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014714 B = 0.004310 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.523846 B = 6494.361207 C = 7638.133748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.362 6.362 4 C 0.465 3.535 5 O -0.473 6.473 6 C 0.141 3.859 7 H 0.086 0.914 8 N -0.666 5.666 9 C 0.084 3.916 10 C 0.043 3.957 11 C -0.144 4.144 12 C -0.132 4.132 13 C -0.511 4.511 14 H 0.071 0.929 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.889 3.111 18 H -0.287 1.287 19 H -0.309 1.309 20 H -0.248 1.248 21 C -0.090 4.090 22 C -0.094 4.094 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.097 4.097 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.353 0.647 33 H 0.068 0.932 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.055 0.945 37 H 0.040 0.960 38 H 0.046 0.954 39 H 0.028 0.972 40 H 0.043 0.957 41 H 0.263 0.737 42 H 0.134 0.866 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.007 2.855 14.015 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.280 6.280 4 C 0.304 3.696 5 O -0.356 6.356 6 C 0.029 3.971 7 H 0.104 0.896 8 N -0.301 5.301 9 C -0.044 4.044 10 C 0.042 3.958 11 C -0.202 4.202 12 C -0.189 4.189 13 C -0.549 4.549 14 H 0.089 0.911 15 C -0.128 4.128 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.215 1.215 19 H -0.238 1.238 20 H -0.174 1.174 21 C -0.091 4.091 22 C -0.112 4.112 23 C -0.141 4.141 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.115 4.115 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.175 0.825 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.152 0.848 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.617 1.849 14.010 23.373 hybrid contribution 0.631 0.351 0.211 0.752 sum -17.986 2.200 14.221 23.034 Atomic orbital electron populations 1.21783 0.92896 1.02710 1.03341 1.22950 0.95060 0.80697 1.02513 1.86491 1.24966 1.31908 1.84635 1.23593 0.80237 0.92547 0.73220 1.90689 1.60064 1.42166 1.42696 1.19820 0.91542 0.88713 0.97018 0.89646 1.60188 1.00357 1.47523 1.22055 1.22109 0.97279 0.99753 0.85226 1.18441 0.89931 0.91671 0.95784 1.22308 1.01722 0.99025 0.97128 1.22127 0.98047 0.99673 0.99012 1.20829 0.92542 1.50865 0.90663 0.91123 1.24964 0.98032 0.94348 0.95475 1.69968 1.13013 1.48978 1.21520 0.87246 0.78213 0.78507 0.83865 1.21508 1.23837 1.17407 1.19554 0.97520 0.98014 0.93985 1.21190 0.99463 0.98947 0.91640 1.21163 0.97374 0.97042 0.98534 1.21189 0.96363 0.98246 0.97679 1.21083 1.00272 1.00124 0.92718 1.21038 0.95797 0.95686 0.99020 0.91549 0.90464 0.91653 0.91315 0.91490 0.82508 0.91367 0.95509 0.95449 0.92664 0.94129 0.93454 0.95355 0.93810 0.92774 0.84801 0.85953 0.86204 0.85987 0.85759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 37.16 0.38 -0.83 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.36 -4.99 10.13 -39.27 -0.40 -5.39 16 4 C 0.46 7.43 7.12 36.00 0.26 7.68 16 5 O -0.47 -9.11 15.67 -18.74 -0.29 -9.40 16 6 C 0.14 2.04 2.73 -70.02 -0.19 1.85 16 7 H 0.09 1.15 7.66 -51.93 -0.40 0.76 16 8 N -0.67 -11.17 4.45 -109.19 -0.49 -11.66 16 9 C 0.08 1.69 4.26 -3.82 -0.02 1.67 16 10 C 0.04 0.99 0.57 -155.67 -0.09 0.90 16 11 C -0.14 -3.08 7.24 37.16 0.27 -2.81 16 12 C -0.13 -3.04 7.54 37.16 0.28 -2.76 16 13 C -0.51 -14.27 8.62 -34.44 -0.30 -14.57 16 14 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 15 C 0.07 2.13 5.32 -17.82 -0.09 2.03 16 16 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 17 Si 0.89 22.49 22.79 -169.99 -3.87 18.62 16 18 H -0.29 -7.34 7.10 56.52 0.40 -6.94 16 19 H -0.31 -7.92 7.11 56.52 0.40 -7.51 16 20 H -0.25 -5.80 4.65 56.52 0.26 -5.54 16 21 C -0.09 -1.13 4.63 -104.62 -0.48 -1.62 16 22 C -0.09 -1.16 9.01 -39.59 -0.36 -1.52 16 23 C -0.12 -1.28 10.05 -39.59 -0.40 -1.67 16 24 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 25 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 26 C -0.10 -1.04 9.67 -39.58 -0.38 -1.43 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 32 H 0.35 5.55 6.27 -39.30 -0.25 5.30 16 33 H 0.07 1.49 7.62 -51.93 -0.40 1.09 16 34 H 0.03 0.53 8.05 -51.93 -0.42 0.11 16 35 H 0.03 0.50 7.06 -51.93 -0.37 0.14 16 36 H 0.05 1.26 4.30 -51.93 -0.22 1.04 16 37 H 0.04 0.82 8.12 -51.93 -0.42 0.40 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.03 0.68 2.26 -51.93 -0.12 0.56 16 40 H 0.04 0.92 7.60 -51.93 -0.39 0.52 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.13 1.76 7.73 -52.48 -0.41 1.36 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 46 H 0.12 1.15 8.04 -52.49 -0.42 0.73 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -32.43 363.19 -7.80 -40.23 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.31 Total: 4.18 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -1.69 Total: -15.17 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.29 Total: -38.54 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.69 Total: -14.79 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -3.87 Total: 18.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.43 -7.80 -40.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419347637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.443 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds