Wall clock time and date at job start Tue Mar 31 2020 10:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45208 * 109.46646 * 2 1 4 4 C 1.34235 * 116.99219 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00319 * 359.72144 * 4 3 2 6 6 C 1.50699 * 119.99402 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.47475 * 299.72037 * 6 4 3 8 8 N 1.46897 * 109.47103 * 179.72153 * 6 4 3 9 9 C 1.46907 * 110.99934 * 84.99800 * 8 6 4 10 10 C 1.52998 * 109.46939 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47411 * 300.00001 * 10 9 8 12 12 C 1.52998 * 109.47129 * 60.00295 * 10 9 8 13 13 C 1.50695 * 109.46986 * 180.02562 * 10 9 8 14 14 H 1.08002 * 120.00395 * 1.23871 * 13 10 9 15 15 C 1.37877 * 120.00249 * 181.24535 * 13 10 9 16 16 N 1.31517 * 119.99965 * 194.11213 * 15 13 10 17 17 Si 1.86794 * 120.00054 * 14.10764 * 15 13 10 18 18 H 1.48509 * 109.47045 * 84.53910 * 17 15 13 19 19 H 1.48506 * 109.47527 * 204.53647 * 17 15 13 20 20 H 1.48501 * 109.47189 * 324.53903 * 17 15 13 21 21 C 1.50695 * 109.47290 * 59.72345 * 6 4 3 22 22 C 1.38240 * 120.00487 * 79.72555 * 21 6 4 23 23 C 1.38224 * 120.00367 * 179.81069 * 22 21 6 24 24 C 1.38240 * 120.00381 * 0.39726 * 23 22 21 25 25 C 1.38233 * 119.99260 * 359.85454 * 24 23 22 26 26 C 1.38233 * 120.00461 * 359.96063 * 25 24 23 27 27 H 1.08999 * 109.47224 * 60.00094 * 1 2 3 28 28 H 1.08997 * 109.46867 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47184 * 300.00490 * 1 2 3 30 30 H 1.08996 * 109.47260 * 240.00294 * 2 1 3 31 31 H 1.08997 * 109.46748 * 119.99702 * 2 1 3 32 32 H 1.00894 * 111.00571 * 208.95117 * 8 6 4 33 33 H 1.08995 * 109.47087 * 300.00050 * 9 8 6 34 34 H 1.08997 * 109.46849 * 60.00570 * 9 8 6 35 35 H 1.08998 * 109.46748 * 69.52038 * 11 10 9 36 36 H 1.08999 * 109.46983 * 189.51922 * 11 10 9 37 37 H 1.08997 * 109.46920 * 309.51621 * 11 10 9 38 38 H 1.09005 * 109.47485 * 59.99681 * 12 10 9 39 39 H 1.09005 * 109.47083 * 179.97438 * 12 10 9 40 40 H 1.09001 * 109.47060 * 299.99599 * 12 10 9 41 41 H 0.97008 * 120.00168 * 179.97438 * 16 15 13 42 42 H 1.08003 * 119.99352 * 0.02562 * 22 21 6 43 43 H 1.08001 * 120.00230 * 180.22951 * 23 22 21 44 44 H 1.07998 * 120.00412 * 179.83906 * 24 23 22 45 45 H 1.08008 * 119.99733 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.00181 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 0.0041 6 6 3.9207 2.9375 0.0000 7 1 3.5883 3.4685 -0.8919 8 7 5.3876 2.8607 0.0060 9 6 5.9126 2.7120 -1.3580 10 6 7.4399 2.6350 -1.3110 11 6 7.9963 3.9165 -0.6873 12 6 7.8641 1.4313 -0.4673 13 6 7.9784 2.4831 -2.7102 14 1 7.3006 2.4654 -3.5509 15 6 9.3366 2.3666 -2.9174 16 7 9.8322 2.5125 -4.1269 17 14 10.4726 2.0018 -1.4803 18 1 10.5171 0.5363 -1.2441 19 1 11.8386 2.4946 -1.7914 20 1 9.9656 2.6843 -0.2627 21 6 3.4513 3.6747 1.2276 22 6 4.0663 3.4515 2.4454 23 6 3.6383 4.1306 3.5707 24 6 2.5899 5.0271 3.4800 25 6 1.9716 5.2465 2.2633 26 6 2.4020 4.5701 1.1372 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.7901 3.6654 0.4625 33 1 5.5166 1.7988 -1.8022 34 1 5.6100 3.5694 -1.9592 35 1 7.7467 3.9423 0.3734 36 1 9.0795 3.9379 -0.8063 37 1 7.5590 4.7822 -1.1847 38 1 7.4678 0.5182 -0.9117 39 1 8.9523 1.3761 -0.4342 40 1 7.4747 1.5416 0.5448 41 1 10.7878 2.4309 -4.2726 42 1 4.8834 2.7489 2.5169 43 1 4.1212 3.9589 4.5213 44 1 2.2538 5.5558 4.3597 45 1 1.1522 5.9466 2.1925 46 1 1.9186 4.7413 0.1867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419347637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:11 Heat of formation + Delta-G solvation = -62.364909 kcal Electronic energy + Delta-G solvation = -25827.652839 eV Core-core repulsion = 22296.254914 eV Total energy + Delta-G solvation = -3531.397925 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.73263 -40.09781 -38.89672 -37.59302 -35.92242 -33.89985 -32.64395 -31.87619 -31.64802 -28.24166 -27.90402 -27.11881 -25.80985 -24.08682 -23.37194 -22.96854 -21.45231 -20.66175 -18.90673 -18.19306 -17.92783 -17.56696 -17.42952 -16.97526 -16.30118 -16.20411 -15.68336 -15.12685 -15.02338 -14.92496 -14.79192 -14.41037 -14.31183 -14.13619 -13.77106 -13.70781 -13.65754 -13.55350 -13.47011 -12.89664 -12.65114 -12.49825 -12.35619 -12.20717 -11.93986 -11.88756 -11.80823 -11.65900 -11.54575 -11.51088 -10.96201 -10.58550 -10.34248 -9.78636 -9.70027 -9.47099 -8.30189 -6.28828 0.33709 0.53714 1.23011 1.35245 1.38059 1.48820 1.60352 2.34816 2.84921 3.07018 3.23085 3.54760 3.80843 3.93968 3.99345 4.09342 4.17063 4.22574 4.24075 4.33085 4.34739 4.39615 4.55480 4.65623 4.72056 4.77921 4.83922 4.89740 4.91176 4.91469 5.03658 5.05324 5.13172 5.19249 5.20071 5.28376 5.45125 5.53340 5.57158 5.60284 5.65368 5.72750 5.83225 5.94889 6.11984 6.30294 6.43033 6.76079 6.82647 7.35945 8.86944 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014714 B = 0.004310 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.523846 B = 6494.361207 C = 7638.133748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.358 6.358 4 C 0.465 3.535 5 O -0.515 6.515 6 C 0.143 3.857 7 H 0.096 0.904 8 N -0.665 5.665 9 C 0.100 3.900 10 C 0.038 3.962 11 C -0.140 4.140 12 C -0.126 4.126 13 C -0.512 4.512 14 H 0.029 0.971 15 C 0.020 3.980 16 N -0.946 5.946 17 Si 0.942 3.058 18 H -0.291 1.291 19 H -0.312 1.312 20 H -0.211 1.211 21 C -0.104 4.104 22 C -0.111 4.111 23 C -0.127 4.127 24 C -0.113 4.113 25 C -0.122 4.122 26 C -0.103 4.103 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.361 0.639 33 H 0.042 0.958 34 H 0.027 0.973 35 H 0.061 0.939 36 H 0.041 0.959 37 H 0.046 0.954 38 H 0.028 0.972 39 H 0.023 0.977 40 H 0.066 0.934 41 H 0.263 0.737 42 H 0.119 0.881 43 H 0.139 0.861 44 H 0.148 0.852 45 H 0.150 0.850 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.869 4.337 17.214 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.307 3.693 5 O -0.402 6.402 6 C 0.031 3.969 7 H 0.113 0.887 8 N -0.301 5.301 9 C -0.029 4.029 10 C 0.037 3.963 11 C -0.197 4.197 12 C -0.182 4.182 13 C -0.551 4.551 14 H 0.047 0.953 15 C -0.178 4.178 16 N -0.586 5.586 17 Si 0.772 3.228 18 H -0.219 1.219 19 H -0.242 1.242 20 H -0.134 1.134 21 C -0.105 4.105 22 C -0.129 4.129 23 C -0.145 4.145 24 C -0.131 4.131 25 C -0.140 4.140 26 C -0.121 4.121 27 H 0.088 0.912 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.185 0.815 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.137 0.863 43 H 0.157 0.843 44 H 0.166 0.834 45 H 0.167 0.833 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.525 3.352 17.238 27.012 hybrid contribution 1.030 -0.120 -0.819 1.322 sum -19.495 3.232 16.419 25.692 Atomic orbital electron populations 1.21791 0.89886 1.04334 1.03798 1.23249 0.97375 0.79499 1.01997 1.86492 1.23695 1.33355 1.83966 1.23951 0.80683 0.92718 0.71945 1.90668 1.61065 1.43520 1.44904 1.19844 0.89850 0.88327 0.98849 0.88654 1.59980 1.02201 1.48218 1.19655 1.21712 0.95384 0.98585 0.87173 1.18439 0.91873 0.92996 0.93037 1.22187 1.00536 0.97781 0.99188 1.22051 0.97530 0.98637 1.00027 1.21155 0.92059 1.49624 0.92225 0.95264 1.25748 0.99749 0.94344 0.97922 1.70103 1.13401 1.51155 1.23953 0.86374 0.75928 0.78233 0.82260 1.21923 1.24198 1.13447 1.19407 0.98956 0.99123 0.92983 1.21166 0.99728 0.99609 0.92434 1.21400 0.97734 0.96826 0.98544 1.21569 0.95370 0.97413 0.98726 1.21440 1.00577 0.99830 0.92145 1.21236 0.95273 0.95295 1.00308 0.91173 0.88258 0.91030 0.92176 0.91813 0.81550 0.93915 0.95464 0.92011 0.94063 0.93473 0.95309 0.95863 0.91476 0.92790 0.86340 0.84266 0.83386 0.83275 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 10.29 71.98 0.74 -1.27 16 2 C 0.05 1.18 6.19 71.98 0.45 1.62 16 3 O -0.36 -9.70 10.13 -51.46 -0.52 -10.22 16 4 C 0.47 14.94 7.12 71.24 0.51 15.45 16 5 O -0.51 -20.33 15.67 21.98 0.34 -19.98 16 6 C 0.14 4.04 2.73 43.42 0.12 4.16 16 7 H 0.10 2.51 7.66 -2.39 -0.02 2.49 16 8 N -0.66 -21.76 4.45 -499.38 -2.22 -23.98 16 9 C 0.10 4.05 4.26 86.30 0.37 4.42 16 10 C 0.04 1.73 0.57 -52.93 -0.03 1.70 16 11 C -0.14 -5.65 7.24 71.98 0.52 -5.13 16 12 C -0.13 -5.68 7.54 71.98 0.54 -5.13 16 13 C -0.51 -29.48 8.62 25.60 0.22 -29.26 16 14 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 15 C 0.02 1.15 5.32 84.65 0.45 1.60 16 16 N -0.95 -60.33 13.96 21.45 0.30 -60.04 16 17 Si 0.94 46.33 22.79 68.60 1.56 47.90 16 18 H -0.29 -14.44 7.10 99.48 0.71 -13.73 16 19 H -0.31 -15.47 7.11 99.48 0.71 -14.76 16 20 H -0.21 -9.09 4.65 99.48 0.46 -8.63 16 21 C -0.10 -2.44 4.63 -19.87 -0.09 -2.53 16 22 C -0.11 -2.54 9.01 22.27 0.20 -2.34 16 23 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 24 C -0.11 -1.66 10.05 22.27 0.22 -1.44 16 25 C -0.12 -1.84 10.05 22.27 0.22 -1.62 16 26 C -0.10 -1.94 9.67 22.27 0.22 -1.72 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 32 H 0.36 10.68 6.27 -89.70 -0.56 10.12 16 33 H 0.04 1.93 7.62 -2.39 -0.02 1.91 16 34 H 0.03 1.08 8.05 -2.39 -0.02 1.06 16 35 H 0.06 2.07 7.06 -2.39 -0.02 2.06 16 36 H 0.04 1.78 4.30 -2.39 -0.01 1.77 16 37 H 0.05 1.82 8.12 -2.39 -0.02 1.80 16 38 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.02 1.07 2.26 -2.38 -0.01 1.06 16 40 H 0.07 2.70 7.60 -2.39 -0.02 2.68 16 41 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 42 H 0.12 3.02 7.73 -2.91 -0.02 3.00 16 43 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 45 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 46 H 0.14 2.17 8.04 -2.91 -0.02 2.14 16 Total: -1.00 -72.82 363.19 4.50 -68.32 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.16 Total: 21.55 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 4.88 Total: -23.54 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -1.92 Total: -84.02 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.18 Total: -30.20 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.56 Total: 47.90 kcal Total: -72.82 4.50 -68.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419347637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.951 kcal (2) G-P(sol) polarization free energy of solvation -72.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds