Wall clock time and date at job start Tue Mar 31 2020 10:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99755 * 2 1 4 4 C 1.50703 * 109.47109 * 66.04401 * 3 2 1 5 5 H 1.08005 * 119.99876 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99989 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47285 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47233 * 119.99722 * 8 6 4 11 11 H 1.48500 * 109.46790 * 239.99650 * 8 6 4 12 12 C 1.46893 * 111.00360 * 236.04616 * 2 1 3 13 13 C 1.52998 * 109.47138 * 293.95275 * 12 2 1 14 14 H 1.08999 * 109.47574 * 59.99947 * 13 12 2 15 15 O 1.42904 * 109.47070 * 299.99983 * 13 12 2 16 16 C 1.53004 * 109.47236 * 179.97438 * 13 12 2 17 17 O 1.42901 * 109.46855 * 184.99680 * 16 13 12 18 18 C 1.35905 * 116.99630 * 180.02562 * 17 16 13 19 19 C 1.38754 * 120.05566 * 359.73131 * 18 17 16 20 20 C 1.38120 * 119.94344 * 179.70252 * 19 18 17 21 21 C 1.38291 * 120.05578 * 0.59024 * 20 19 18 22 22 C 1.38247 * 120.11008 * 359.67983 * 21 20 19 23 23 C 1.50701 * 119.97017 * 179.97438 * 22 21 20 24 24 C 1.52994 * 117.50004 * 8.64970 * 23 22 21 25 25 C 1.52998 * 117.49947 * 300.02297 * 23 22 21 26 26 C 1.38166 * 120.05370 * 0.02562 * 22 21 20 27 27 H 1.08995 * 109.47046 * 60.00231 * 1 2 3 28 28 H 1.09008 * 109.46903 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47457 * 299.99830 * 1 2 3 30 30 H 1.08992 * 109.47459 * 186.04319 * 3 2 1 31 31 H 1.09004 * 109.47040 * 306.04470 * 3 2 1 32 32 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47389 * 53.94866 * 12 2 1 34 34 H 1.08994 * 109.47622 * 173.94883 * 12 2 1 35 35 H 0.96699 * 113.99808 * 300.00031 * 15 13 12 36 36 H 1.08997 * 109.47179 * 305.00042 * 16 13 12 37 37 H 1.09002 * 109.46927 * 64.99980 * 16 13 12 38 38 H 1.08000 * 120.02947 * 359.96504 * 19 18 17 39 39 H 1.07997 * 119.97538 * 180.29397 * 20 19 18 40 40 H 1.08003 * 119.94845 * 179.70706 * 21 20 19 41 41 H 1.09003 * 115.54438 * 154.35897 * 23 22 21 42 42 H 1.09004 * 117.49848 * 359.97438 * 24 23 22 43 43 H 1.09005 * 117.50057 * 145.01796 * 24 23 22 44 44 H 1.08999 * 117.49785 * 214.97532 * 25 23 22 45 45 H 1.08994 * 117.50005 * 359.97438 * 25 23 22 46 46 H 1.08002 * 120.02418 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5113 2.0488 6 6 2.0266 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5827 4.1869 3.1382 9 1 0.8155 3.2443 3.9914 10 1 2.8246 4.5945 3.8431 11 1 0.7548 5.3877 2.8596 12 6 1.9955 -0.7659 -1.1375 13 6 1.6316 -2.2426 -0.9703 14 1 0.5473 -2.3476 -0.9323 15 8 2.2010 -2.7391 0.2427 16 6 2.1794 -3.0403 -2.1554 17 8 1.7413 -4.3971 -2.0596 18 6 2.1437 -5.2461 -3.0415 19 6 2.9393 -4.7815 -4.0790 20 6 3.3521 -5.6478 -5.0724 21 6 2.9630 -6.9745 -5.0402 22 6 2.1657 -7.4386 -4.0105 23 6 1.7431 -8.8847 -3.9788 24 6 2.3879 -9.8316 -4.9930 25 6 0.9273 -9.4085 -5.1625 26 6 1.7552 -6.5773 -3.0112 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.0796 1.3446 -0.1082 31 1 1.5610 1.9274 -0.8310 32 1 2.9863 4.9181 0.7769 33 1 1.5611 -0.3873 -2.0628 34 1 3.0797 -0.6610 -1.1756 35 1 3.1653 -2.6770 0.2788 36 1 1.8145 -2.6054 -3.0859 37 1 3.2689 -3.0085 -2.1422 38 1 3.2391 -3.7444 -4.1075 39 1 3.9753 -5.2878 -5.8776 40 1 3.2829 -7.6493 -5.8204 41 1 1.5120 -9.2854 -2.9918 42 1 3.1175 -9.4084 -5.6834 43 1 2.5814 -10.8556 -4.6732 44 1 0.1600 -10.1541 -4.9543 45 1 0.6960 -8.7070 -5.9640 46 1 1.1327 -6.9405 -2.2068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424135714.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:43 Heat of formation + Delta-G solvation = -33.998480 kcal Electronic energy + Delta-G solvation = -23978.530322 eV Core-core repulsion = 20448.362458 eV Total energy + Delta-G solvation = -3530.167864 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.47195 -38.88027 -37.66413 -36.29507 -35.36108 -32.55602 -31.41147 -30.57112 -29.54215 -27.30382 -26.48224 -24.59877 -23.54265 -23.10679 -22.47533 -21.47042 -20.55919 -20.12932 -17.98002 -16.88144 -16.55633 -16.42649 -16.27071 -15.73401 -15.41301 -15.03138 -14.81773 -14.46533 -14.22659 -13.95731 -13.62670 -13.50416 -13.26704 -12.86049 -12.57679 -12.34715 -12.15433 -11.94135 -11.64828 -11.45194 -11.36440 -11.24367 -11.01683 -10.92919 -10.82420 -10.75813 -10.73745 -10.66658 -10.31123 -10.02759 -9.71112 -9.17087 -8.92144 -8.45814 -8.33915 -7.26107 -6.04813 -4.05731 1.05132 1.25532 2.96888 3.29360 3.30694 3.38098 3.43958 3.76324 4.21956 4.40882 4.49040 4.55266 4.56794 4.63681 4.69679 4.75292 4.85937 4.97017 5.01901 5.10414 5.23069 5.26477 5.31347 5.34793 5.38518 5.44162 5.53326 5.54938 5.65671 5.70882 5.82720 5.95051 6.11444 6.12330 6.22199 6.22848 6.33032 6.36681 6.56255 6.74635 7.21324 7.27789 7.30375 7.77573 7.93328 8.05879 8.15426 8.51110 9.02583 9.58721 11.06229 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.044066 B = 0.002036 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.263889 B =13747.410140 C =14059.918888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.528 5.528 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.027 3.973 13 C 0.116 3.884 14 H 0.105 0.895 15 O -0.537 6.537 16 C 0.027 3.973 17 O -0.302 6.302 18 C 0.139 3.861 19 C -0.216 4.216 20 C -0.075 4.075 21 C -0.165 4.165 22 C -0.015 4.015 23 C -0.119 4.119 24 C -0.176 4.176 25 C -0.168 4.168 26 C -0.149 4.149 27 H 0.011 0.989 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.029 0.971 31 H -0.009 1.009 32 H 0.260 0.740 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.371 0.629 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 -24.317 -13.758 27.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.252 5.252 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.102 4.102 13 C 0.056 3.944 14 H 0.123 0.877 15 O -0.340 6.340 16 C -0.049 4.049 17 O -0.215 6.215 18 C 0.093 3.907 19 C -0.234 4.234 20 C -0.094 4.094 21 C -0.183 4.183 22 C -0.015 4.015 23 C -0.137 4.137 24 C -0.212 4.212 25 C -0.205 4.205 26 C -0.167 4.167 27 H 0.029 0.971 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.008 0.992 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.217 0.783 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.133 0.867 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.438 -24.497 -13.031 27.751 hybrid contribution 0.345 1.383 -0.373 1.473 sum -0.093 -23.114 -13.404 26.720 Atomic orbital electron populations 1.22269 0.88767 0.99362 1.00899 1.62003 1.07051 1.17511 1.38678 1.19772 0.95311 0.81370 0.96798 1.21204 1.34694 0.96833 1.01640 0.91665 1.25002 0.95309 0.97359 0.97083 1.69968 1.38536 1.11419 1.34085 0.86419 0.78160 0.79260 0.83471 1.19588 1.21004 1.21142 1.22612 1.00818 0.92797 0.94007 1.21951 0.99339 0.90759 0.82365 0.87731 1.86634 1.25121 1.84808 1.37469 1.23726 0.99826 0.80262 1.01058 1.86164 1.70407 1.20035 1.44872 1.19043 0.93457 0.90343 0.87880 1.21306 1.04036 1.01062 0.97021 1.20895 0.97895 0.93075 0.97488 1.20897 1.01696 0.95942 0.99802 1.18852 0.95731 0.93061 0.93827 1.21036 1.05395 0.91265 0.96027 1.23076 0.96193 0.99624 1.02352 1.23029 0.94434 1.03318 0.99716 1.20181 1.04748 0.90577 1.01212 0.97094 0.93394 0.90623 0.95293 0.99171 0.92994 0.94982 0.90827 0.78295 0.91262 0.91558 0.85420 0.85818 0.86008 0.86718 0.88263 0.88369 0.88356 0.88496 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.16 60.07 0.55 1.25 16 2 N -0.53 -11.32 4.62 -244.37 -1.13 -12.45 16 3 C 0.19 4.98 4.72 -4.97 -0.02 4.95 16 4 C -0.51 -14.25 8.51 -34.44 -0.29 -14.54 16 5 H 0.07 1.84 7.10 -52.48 -0.37 1.47 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.03 0.46 4.62 -3.83 -0.02 0.44 16 13 C 0.12 1.70 3.12 -26.73 -0.08 1.61 16 14 H 0.10 1.61 6.47 -51.93 -0.34 1.27 16 15 O -0.54 -8.64 13.17 -40.06 -0.53 -9.17 16 16 C 0.03 0.33 4.38 37.16 0.16 0.49 16 17 O -0.30 -4.11 10.10 -24.27 -0.25 -4.36 16 18 C 0.14 1.71 6.69 -39.22 -0.26 1.45 16 19 C -0.22 -2.32 9.04 -39.43 -0.36 -2.68 16 20 C -0.08 -0.71 10.04 -39.61 -0.40 -1.11 16 21 C -0.17 -1.51 9.30 -39.56 -0.37 -1.88 16 22 C -0.01 -0.14 5.61 -104.64 -0.59 -0.73 16 23 C -0.12 -0.92 6.04 -91.78 -0.55 -1.47 16 24 C -0.18 -1.07 9.86 -26.73 -0.26 -1.33 16 25 C -0.17 -1.08 10.16 -26.73 -0.27 -1.35 16 26 C -0.15 -1.69 9.68 -39.43 -0.38 -2.07 16 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.05 0.83 6.30 -51.92 -0.33 0.50 16 29 H 0.08 1.60 6.86 -51.93 -0.36 1.25 16 30 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 31 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 34 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 35 H 0.37 4.80 9.05 45.56 0.41 5.21 16 36 H 0.07 0.74 7.65 -51.93 -0.40 0.35 16 37 H 0.07 0.71 7.67 -51.93 -0.40 0.31 16 38 H 0.13 1.22 6.30 -52.49 -0.33 0.89 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 0.87 6.01 -52.48 -0.32 0.55 16 41 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 0.56 6.17 -51.93 -0.32 0.24 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 375.25 15.07 5.66 5.66 Total: -1.00 -32.16 375.25 -10.28 -42.44 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.50 Total: 2.64 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -3.24 Total: -15.53 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.39 Total: -38.39 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.77 Total: -13.53 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.16 -10.28 -42.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424135714.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.444 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds