Wall clock time and date at job start Tue Mar 31 2020 10:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99755 * 2 1 4 4 C 1.50703 * 109.47109 * 66.04401 * 3 2 1 5 5 H 1.08005 * 119.99876 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99989 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47285 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47233 * 119.99722 * 8 6 4 11 11 H 1.48500 * 109.46790 * 239.99650 * 8 6 4 12 12 C 1.46893 * 111.00360 * 236.04616 * 2 1 3 13 13 C 1.52998 * 109.47138 * 293.95275 * 12 2 1 14 14 H 1.08999 * 109.47574 * 59.99947 * 13 12 2 15 15 O 1.42904 * 109.47070 * 299.99983 * 13 12 2 16 16 C 1.53004 * 109.47236 * 179.97438 * 13 12 2 17 17 O 1.42901 * 109.46855 * 184.99680 * 16 13 12 18 18 C 1.35905 * 116.99630 * 180.02562 * 17 16 13 19 19 C 1.38754 * 120.05566 * 359.73131 * 18 17 16 20 20 C 1.38120 * 119.94344 * 179.70252 * 19 18 17 21 21 C 1.38291 * 120.05578 * 0.59024 * 20 19 18 22 22 C 1.38247 * 120.11008 * 359.67983 * 21 20 19 23 23 C 1.50701 * 119.97017 * 179.97438 * 22 21 20 24 24 C 1.52994 * 117.50004 * 8.64970 * 23 22 21 25 25 C 1.52998 * 117.49947 * 300.02297 * 23 22 21 26 26 C 1.38166 * 120.05370 * 0.02562 * 22 21 20 27 27 H 1.08995 * 109.47046 * 60.00231 * 1 2 3 28 28 H 1.09008 * 109.46903 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47457 * 299.99830 * 1 2 3 30 30 H 1.08992 * 109.47459 * 186.04319 * 3 2 1 31 31 H 1.09004 * 109.47040 * 306.04470 * 3 2 1 32 32 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47389 * 53.94866 * 12 2 1 34 34 H 1.08994 * 109.47622 * 173.94883 * 12 2 1 35 35 H 0.96699 * 113.99808 * 300.00031 * 15 13 12 36 36 H 1.08997 * 109.47179 * 305.00042 * 16 13 12 37 37 H 1.09002 * 109.46927 * 64.99980 * 16 13 12 38 38 H 1.08000 * 120.02947 * 359.96504 * 19 18 17 39 39 H 1.07997 * 119.97538 * 180.29397 * 20 19 18 40 40 H 1.08003 * 119.94845 * 179.70706 * 21 20 19 41 41 H 1.09003 * 115.54438 * 154.35897 * 23 22 21 42 42 H 1.09004 * 117.49848 * 359.97438 * 24 23 22 43 43 H 1.09005 * 117.50057 * 145.01796 * 24 23 22 44 44 H 1.08999 * 117.49785 * 214.97532 * 25 23 22 45 45 H 1.08994 * 117.50005 * 359.97438 * 25 23 22 46 46 H 1.08002 * 120.02418 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5113 2.0488 6 6 2.0266 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5827 4.1869 3.1382 9 1 0.8155 3.2443 3.9914 10 1 2.8246 4.5945 3.8431 11 1 0.7548 5.3877 2.8596 12 6 1.9955 -0.7659 -1.1375 13 6 1.6316 -2.2426 -0.9703 14 1 0.5473 -2.3476 -0.9323 15 8 2.2010 -2.7391 0.2427 16 6 2.1794 -3.0403 -2.1554 17 8 1.7413 -4.3971 -2.0596 18 6 2.1437 -5.2461 -3.0415 19 6 2.9393 -4.7815 -4.0790 20 6 3.3521 -5.6478 -5.0724 21 6 2.9630 -6.9745 -5.0402 22 6 2.1657 -7.4386 -4.0105 23 6 1.7431 -8.8847 -3.9788 24 6 2.3879 -9.8316 -4.9930 25 6 0.9273 -9.4085 -5.1625 26 6 1.7552 -6.5773 -3.0112 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.0796 1.3446 -0.1082 31 1 1.5610 1.9274 -0.8310 32 1 2.9863 4.9181 0.7769 33 1 1.5611 -0.3873 -2.0628 34 1 3.0797 -0.6610 -1.1756 35 1 3.1653 -2.6770 0.2788 36 1 1.8145 -2.6054 -3.0859 37 1 3.2689 -3.0085 -2.1422 38 1 3.2391 -3.7444 -4.1075 39 1 3.9753 -5.2878 -5.8776 40 1 3.2829 -7.6493 -5.8204 41 1 1.5120 -9.2854 -2.9918 42 1 3.1175 -9.4084 -5.6834 43 1 2.5814 -10.8556 -4.6732 44 1 0.1600 -10.1541 -4.9543 45 1 0.6960 -8.7070 -5.9640 46 1 1.1327 -6.9405 -2.2068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424135714.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:42 Heat of formation + Delta-G solvation = -54.859027 kcal Electronic energy + Delta-G solvation = -23979.434904 eV Core-core repulsion = 20448.362458 eV Total energy + Delta-G solvation = -3531.072446 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.30134 -39.80790 -38.84654 -37.21526 -36.68669 -34.63595 -32.31200 -31.59229 -30.48952 -29.18605 -27.87485 -26.02173 -24.59846 -23.77733 -23.08808 -22.87670 -21.86738 -21.14308 -18.81337 -18.52347 -17.82097 -17.59684 -17.11993 -16.81671 -16.53477 -16.23162 -16.13924 -15.90130 -15.35899 -15.06661 -14.91619 -14.64658 -14.28362 -14.10045 -13.82862 -13.60192 -13.25536 -13.08579 -12.83582 -12.76158 -12.62564 -12.58077 -12.41690 -12.24835 -12.14354 -12.01915 -11.84741 -11.59808 -11.43187 -11.37767 -11.28556 -10.88461 -10.63084 -9.65377 -9.14974 -9.00134 -8.21976 -6.31322 0.30329 0.46884 1.40321 1.41231 1.54990 2.02160 2.40396 2.62979 3.10562 3.14556 3.24008 3.53008 3.65060 3.80847 3.84672 3.94860 3.97021 4.04858 4.12539 4.16368 4.17855 4.27951 4.29657 4.38410 4.49226 4.55545 4.66982 4.69718 4.78778 4.82521 4.93920 4.97396 5.06236 5.08725 5.14665 5.15552 5.26060 5.29087 5.34724 5.48733 5.63894 5.64516 5.82512 6.03169 6.28382 6.42324 6.60003 6.84399 6.88690 7.38362 8.89102 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.044066 B = 0.002036 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.263889 B =13747.410140 C =14059.918888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.540 5.540 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.933 5.933 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.028 3.972 13 C 0.127 3.873 14 H 0.097 0.903 15 O -0.557 6.557 16 C 0.035 3.965 17 O -0.323 6.323 18 C 0.116 3.884 19 C -0.225 4.225 20 C -0.077 4.077 21 C -0.167 4.167 22 C -0.016 4.016 23 C -0.139 4.139 24 C -0.165 4.165 25 C -0.165 4.165 26 C -0.168 4.168 27 H 0.014 0.986 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.008 0.992 31 H -0.035 1.035 32 H 0.265 0.735 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.383 0.617 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.138 0.862 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.094 0.906 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.272 -25.701 -14.582 29.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.264 5.264 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.197 4.197 7 N -0.574 5.574 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.203 1.203 12 C -0.101 4.101 13 C 0.067 3.933 14 H 0.115 0.885 15 O -0.363 6.363 16 C -0.040 4.040 17 O -0.237 6.237 18 C 0.071 3.929 19 C -0.244 4.244 20 C -0.095 4.095 21 C -0.185 4.185 22 C -0.017 4.017 23 C -0.157 4.157 24 C -0.201 4.201 25 C -0.201 4.201 26 C -0.187 4.187 27 H 0.032 0.968 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.026 0.974 31 H -0.018 1.018 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.231 0.769 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.155 0.845 39 H 0.167 0.833 40 H 0.162 0.838 41 H 0.133 0.867 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.113 0.887 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.239 -25.907 -13.866 29.385 hybrid contribution 0.294 1.708 -0.190 1.743 sum 0.055 -24.199 -14.057 27.985 Atomic orbital electron populations 1.22238 0.87809 1.00800 1.00070 1.61882 1.08048 1.15119 1.41386 1.19421 0.93873 0.83560 0.95020 1.21500 1.34782 0.97463 1.02424 0.92171 1.25892 0.95053 0.98039 1.00673 1.70077 1.39382 1.11894 1.36052 0.85337 0.78090 0.78152 0.79056 1.18999 1.20318 1.20343 1.22674 1.01031 0.93628 0.92737 1.21760 0.98975 0.89489 0.83082 0.88486 1.86591 1.26414 1.84886 1.38430 1.23565 1.00550 0.79785 1.00135 1.86098 1.71144 1.20537 1.45895 1.19262 0.94764 0.90512 0.88403 1.21492 1.03973 1.01900 0.97002 1.21246 0.97615 0.93035 0.97604 1.21221 1.00941 0.96346 0.99944 1.19110 0.95282 0.93890 0.93380 1.21092 1.07259 0.90552 0.96828 1.23184 0.96001 0.99796 1.01163 1.23095 0.95128 1.03272 0.98644 1.20343 1.05525 0.90832 1.02008 0.96786 0.90744 0.92571 0.97372 1.01766 0.92662 0.93958 0.90334 0.76895 0.89808 0.90072 0.84461 0.83322 0.83814 0.86651 0.87640 0.87084 0.87246 0.88730 0.85627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 9.16 127.69 1.17 2.71 16 2 N -0.54 -23.30 4.62 -927.05 -4.28 -27.58 16 3 C 0.21 11.00 4.72 85.56 0.40 11.40 16 4 C -0.52 -29.98 8.51 25.60 0.22 -29.77 16 5 H 0.06 3.44 7.10 -2.91 -0.02 3.42 16 6 C 0.00 0.08 5.46 84.65 0.46 0.54 16 7 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 8 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 C 0.03 0.93 4.62 86.30 0.40 1.33 16 13 C 0.13 3.61 3.12 30.60 0.10 3.70 16 14 H 0.10 2.90 6.47 -2.39 -0.02 2.89 16 15 O -0.56 -17.68 13.17 -144.36 -1.90 -19.58 16 16 C 0.04 0.81 4.38 71.98 0.32 1.13 16 17 O -0.32 -8.70 10.10 -87.87 -0.89 -9.59 16 18 C 0.12 2.81 6.69 22.51 0.15 2.96 16 19 C -0.23 -4.55 9.04 22.37 0.20 -4.35 16 20 C -0.08 -1.29 10.04 22.25 0.22 -1.06 16 21 C -0.17 -2.71 9.30 22.28 0.21 -2.50 16 22 C -0.02 -0.31 5.61 -19.88 -0.11 -0.42 16 23 C -0.14 -1.97 6.04 -11.54 -0.07 -2.04 16 24 C -0.16 -1.62 9.86 30.59 0.30 -1.32 16 25 C -0.16 -1.80 10.16 30.60 0.31 -1.49 16 26 C -0.17 -3.83 9.68 22.36 0.22 -3.62 16 27 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 2.52 6.30 -2.38 -0.02 2.50 16 29 H 0.06 2.40 6.86 -2.39 -0.02 2.39 16 30 H 0.01 0.46 7.93 -2.39 -0.02 0.44 16 31 H -0.04 -2.02 8.12 -2.38 -0.02 -2.04 16 32 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 33 H 0.04 1.33 8.12 -2.39 -0.02 1.31 16 34 H 0.08 2.50 7.93 -2.39 -0.02 2.48 16 35 H 0.38 9.72 9.05 -74.06 -0.67 9.05 16 36 H 0.08 1.67 7.65 -2.39 -0.02 1.65 16 37 H 0.08 1.61 7.67 -2.39 -0.02 1.59 16 38 H 0.14 2.39 6.30 -2.91 -0.02 2.37 16 39 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.14 1.63 6.01 -2.91 -0.02 1.62 16 41 H 0.12 1.56 8.14 -2.39 -0.02 1.55 16 42 H 0.11 0.90 6.17 -2.39 -0.01 0.88 16 43 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.13 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -69.32 375.25 0.04 -69.28 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.30 Total: 19.24 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 4.49 Total: -22.78 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -4.00 Total: -83.28 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -2.79 Total: -29.17 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -69.32 0.04 -69.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424135714.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.420 kcal (2) G-P(sol) polarization free energy of solvation -69.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds