Wall clock time and date at job start Tue Mar 31 2020 10:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 111.00285 * 2 1 4 4 C 1.50701 * 109.47002 * 293.95386 * 3 2 1 5 5 H 1.07995 * 119.99839 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99974 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00154 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00040 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46835 * 90.00152 * 8 6 4 10 10 H 1.48501 * 109.47336 * 209.99873 * 8 6 4 11 11 H 1.48494 * 109.47425 * 330.00235 * 8 6 4 12 12 C 1.46904 * 111.00247 * 123.95819 * 2 1 3 13 13 C 1.52998 * 109.47452 * 66.04005 * 12 2 1 14 14 H 1.09005 * 109.47096 * 305.00339 * 13 12 2 15 15 O 1.42903 * 109.46786 * 65.00017 * 13 12 2 16 16 C 1.53001 * 109.47259 * 185.00389 * 13 12 2 17 17 O 1.42901 * 109.47022 * 174.99780 * 16 13 12 18 18 C 1.35897 * 117.00049 * 180.02562 * 17 16 13 19 19 C 1.38758 * 120.05467 * 0.25628 * 18 17 16 20 20 C 1.38119 * 119.94423 * 180.25485 * 19 18 17 21 21 C 1.38288 * 120.05366 * 359.46692 * 20 19 18 22 22 C 1.38241 * 120.11556 * 0.28328 * 21 20 19 23 23 C 1.50696 * 119.97662 * 179.97438 * 22 21 20 24 24 C 1.52995 * 117.49926 * 8.61708 * 23 22 21 25 25 C 1.52994 * 60.00276 * 252.50996 * 24 23 22 26 26 C 1.38172 * 120.05236 * 359.97438 * 22 21 20 27 27 H 1.09012 * 109.46723 * 296.04628 * 1 2 3 28 28 H 1.08993 * 109.47039 * 56.04235 * 1 2 3 29 29 H 1.08997 * 109.47615 * 176.04958 * 1 2 3 30 30 H 1.09001 * 109.47039 * 53.95644 * 3 2 1 31 31 H 1.09003 * 109.46741 * 173.95389 * 3 2 1 32 32 H 0.96997 * 120.00297 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.46657 * 306.04225 * 12 2 1 34 34 H 1.08994 * 109.47004 * 186.04614 * 12 2 1 35 35 H 0.96694 * 113.99644 * 60.00420 * 15 13 12 36 36 H 1.09005 * 109.46978 * 55.00260 * 16 13 12 37 37 H 1.08996 * 109.47191 * 294.99989 * 16 13 12 38 38 H 1.07998 * 120.02572 * 359.97438 * 19 18 17 39 39 H 1.08002 * 119.97592 * 179.75244 * 20 19 18 40 40 H 1.08006 * 119.94478 * 180.25913 * 21 20 19 41 41 H 1.08998 * 115.55289 * 154.33136 * 23 22 21 42 42 H 1.09002 * 117.50031 * 0.02562 * 24 23 22 43 43 H 1.08999 * 117.50158 * 145.01853 * 24 23 22 44 44 H 1.08999 * 117.50570 * 252.50796 * 25 24 23 45 45 H 1.09007 * 117.51572 * 107.47764 * 25 24 23 46 46 H 1.07998 * 120.02866 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5115 -2.0484 6 6 2.0268 3.3494 -1.5285 7 7 2.7120 4.0019 -0.6150 8 14 1.5831 4.1867 -3.1383 9 1 0.2705 4.8667 -2.9971 10 1 2.6252 5.1883 -3.4790 11 1 1.5007 3.1710 -4.2183 12 6 1.9955 -0.7661 1.1375 13 6 1.6314 -2.2427 0.9704 14 1 0.5531 -2.3389 0.8433 15 8 2.2955 -2.7696 -0.1801 16 6 2.0699 -3.0200 2.2131 17 8 1.6271 -4.3746 2.1085 18 6 1.9362 -5.2060 3.1381 19 6 2.6465 -4.7264 4.2293 20 6 2.9640 -5.5747 5.2721 21 6 2.5650 -6.8982 5.2342 22 6 1.8527 -7.3772 4.1506 23 6 1.4200 -8.8202 4.1123 24 6 1.6188 -9.6512 5.3814 25 6 2.5148 -9.8877 4.1641 26 6 1.5372 -6.5340 3.1025 27 1 -0.3633 0.4513 0.9234 28 1 -0.3633 0.5740 -0.8523 29 1 -0.3634 -1.0252 -0.0708 30 1 1.5612 1.9273 0.8309 31 1 3.0798 1.3443 0.1082 32 1 2.9860 4.9182 -0.7767 33 1 1.5611 -0.3873 2.0628 34 1 3.0797 -0.6612 1.1755 35 1 3.2600 -2.7167 -0.1360 36 1 1.6329 -2.5624 3.1008 37 1 3.1569 -2.9980 2.2906 38 1 2.9548 -3.6919 4.2612 39 1 3.5203 -5.2030 6.1199 40 1 2.8106 -7.5590 6.0526 41 1 0.5398 -9.0312 3.5050 42 1 2.0623 -9.1542 6.2442 43 1 0.8692 -10.4090 5.6095 44 1 2.3548 -10.8010 3.5910 45 1 3.5482 -9.5462 4.2254 46 1 0.9811 -6.9087 2.2559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424135719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:47 Heat of formation + Delta-G solvation = -34.077384 kcal Electronic energy + Delta-G solvation = -23974.947765 eV Core-core repulsion = 20444.776479 eV Total energy + Delta-G solvation = -3530.171286 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47444 -38.88371 -37.66636 -36.29619 -35.39110 -32.56205 -31.41166 -30.56858 -29.54158 -27.30055 -26.49958 -24.59941 -23.54111 -23.10710 -22.47541 -21.47242 -20.56918 -20.13694 -17.98136 -16.88369 -16.53855 -16.45552 -16.27374 -15.72335 -15.42173 -15.06756 -14.76400 -14.50863 -14.22400 -13.95946 -13.65391 -13.47837 -13.26499 -12.84619 -12.63072 -12.32756 -12.14155 -11.94409 -11.64882 -11.46846 -11.37110 -11.20730 -11.03483 -10.92865 -10.80946 -10.77113 -10.74265 -10.69517 -10.30592 -10.04416 -9.71695 -9.18133 -8.92217 -8.45721 -8.34060 -7.26587 -6.04654 -4.05734 1.05004 1.25412 2.96771 3.29216 3.31598 3.37749 3.43154 3.76391 4.21890 4.40841 4.48999 4.55017 4.56098 4.63950 4.68670 4.75254 4.85739 4.96554 5.02014 5.10380 5.23142 5.26604 5.31264 5.34532 5.37998 5.44218 5.52635 5.55013 5.65598 5.71002 5.82640 5.94328 6.11273 6.12457 6.22088 6.22916 6.31082 6.36576 6.56129 6.74029 7.21204 7.27563 7.30210 7.77185 7.91866 8.05438 8.15171 8.50854 9.02131 9.58612 11.06303 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.044086 B = 0.002035 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.970588 B =13755.990545 C =14063.585149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.028 3.972 13 C 0.116 3.884 14 H 0.106 0.894 15 O -0.538 6.538 16 C 0.027 3.973 17 O -0.302 6.302 18 C 0.139 3.861 19 C -0.216 4.216 20 C -0.075 4.075 21 C -0.165 4.165 22 C -0.014 4.014 23 C -0.119 4.119 24 C -0.176 4.176 25 C -0.168 4.168 26 C -0.149 4.149 27 H 0.010 0.990 28 H 0.077 0.923 29 H 0.048 0.952 30 H -0.010 1.010 31 H 0.029 0.971 32 H 0.261 0.739 33 H 0.032 0.968 34 H 0.074 0.926 35 H 0.370 0.630 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.171 -24.274 13.860 27.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.102 4.102 13 C 0.056 3.944 14 H 0.124 0.876 15 O -0.341 6.341 16 C -0.049 4.049 17 O -0.215 6.215 18 C 0.093 3.907 19 C -0.234 4.234 20 C -0.093 4.093 21 C -0.183 4.183 22 C -0.015 4.015 23 C -0.137 4.137 24 C -0.213 4.213 25 C -0.205 4.205 26 C -0.167 4.167 27 H 0.028 0.972 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.008 0.992 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.216 0.784 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.133 0.867 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.644 -24.451 13.072 27.734 hybrid contribution 0.266 1.383 0.441 1.476 sum -0.378 -23.069 13.513 26.738 Atomic orbital electron populations 1.22291 0.88808 0.99741 1.00628 1.62009 1.07004 1.17558 1.38749 1.19761 0.95321 0.81348 0.96777 1.21161 1.34768 0.96866 1.01678 0.91721 1.24997 0.95279 0.97352 0.97084 1.69957 1.38438 1.11425 1.34168 0.86474 0.77954 0.79189 0.83684 1.20753 1.21261 1.19694 1.22626 1.00843 0.92761 0.93921 1.21970 0.98835 0.90643 0.83001 0.87583 1.86644 1.23066 1.83775 1.40654 1.23729 0.99804 0.80385 1.00960 1.86163 1.73945 1.20900 1.40465 1.19043 0.93975 0.90512 0.87192 1.21306 1.05224 1.01140 0.95767 1.20894 0.97712 0.93206 0.97535 1.20894 1.02423 0.95989 0.99035 1.18851 0.96138 0.93120 0.93349 1.21034 1.01154 0.88948 1.02601 1.23073 1.03274 1.02677 0.92238 1.23030 0.96281 0.99566 1.01585 1.20182 1.05402 0.90779 1.00360 0.97153 0.90454 0.93362 0.99177 0.95274 0.92934 0.95000 0.90766 0.78368 0.91244 0.91583 0.85427 0.85818 0.86007 0.86733 0.88266 0.88384 0.88343 0.88477 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.14 60.06 0.55 1.21 16 2 N -0.53 -11.36 4.70 -244.37 -1.15 -12.51 16 3 C 0.19 4.99 4.72 -4.97 -0.02 4.97 16 4 C -0.51 -14.27 8.46 -34.44 -0.29 -14.56 16 5 H 0.06 1.82 7.12 -52.49 -0.37 1.45 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.03 0.47 4.60 -3.82 -0.02 0.45 16 13 C 0.12 1.70 3.20 -26.73 -0.09 1.61 16 14 H 0.11 1.65 6.34 -51.93 -0.33 1.32 16 15 O -0.54 -8.64 13.25 -40.07 -0.53 -9.17 16 16 C 0.03 0.33 4.37 37.16 0.16 0.49 16 17 O -0.30 -4.12 10.10 -24.26 -0.25 -4.36 16 18 C 0.14 1.71 6.69 -39.22 -0.26 1.45 16 19 C -0.22 -2.32 9.04 -39.43 -0.36 -2.68 16 20 C -0.08 -0.71 10.04 -39.61 -0.40 -1.10 16 21 C -0.17 -1.51 9.30 -39.56 -0.37 -1.87 16 22 C -0.01 -0.14 5.61 -104.65 -0.59 -0.73 16 23 C -0.12 -0.92 6.04 -91.78 -0.55 -1.47 16 24 C -0.18 -1.07 9.86 -26.74 -0.26 -1.33 16 25 C -0.17 -1.08 10.16 -26.73 -0.27 -1.35 16 26 C -0.15 -1.69 9.68 -39.43 -0.38 -2.07 16 27 H 0.01 0.19 8.14 -51.92 -0.42 -0.23 16 28 H 0.08 1.64 6.76 -51.93 -0.35 1.29 16 29 H 0.05 0.83 6.37 -51.93 -0.33 0.50 16 30 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 31 H 0.03 0.80 7.93 -51.93 -0.41 0.38 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 34 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 35 H 0.37 4.71 9.04 45.56 0.41 5.12 16 36 H 0.07 0.75 7.65 -51.93 -0.40 0.35 16 37 H 0.07 0.70 7.67 -51.93 -0.40 0.30 16 38 H 0.13 1.22 6.30 -52.49 -0.33 0.89 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.87 6.01 -52.48 -0.32 0.55 16 41 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.10 0.56 6.17 -51.93 -0.32 0.24 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.65 8.14 -51.92 -0.42 0.22 16 46 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -32.19 375.25 -10.30 -42.49 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.50 Total: 2.67 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -3.25 Total: -15.55 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: -0.41 Total: -38.44 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.78 Total: -13.53 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.19 -10.30 -42.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424135719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.410 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds