Wall clock time and date at job start Tue Mar 31 2020 10:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00199 * 2 1 4 4 C 1.50698 * 109.47190 * 124.99825 * 3 2 1 5 5 C 1.38162 * 120.03204 * 265.02524 * 4 3 2 6 6 C 1.38244 * 120.06067 * 179.97438 * 5 4 3 7 7 C 1.38292 * 120.10581 * 0.02562 * 6 5 4 8 8 C 1.38115 * 120.05782 * 359.67469 * 7 6 5 9 9 C 1.38715 * 120.02775 * 85.00408 * 4 3 2 10 10 O 1.35903 * 120.05180 * 0.02562 * 9 4 3 11 11 C 1.42901 * 116.99710 * 180.02562 * 10 9 4 12 12 C 1.52997 * 109.47198 * 180.02562 * 11 10 9 13 13 H 1.09006 * 109.47237 * 305.00178 * 12 11 10 14 14 O 1.42901 * 109.47106 * 64.99835 * 12 11 10 15 15 C 1.53001 * 109.47572 * 185.00440 * 12 11 10 16 16 N 1.46894 * 109.47404 * 178.51318 * 15 12 11 17 17 C 1.46904 * 111.00240 * 164.00842 * 16 15 12 18 18 C 1.46904 * 110.99876 * 287.95689 * 16 15 12 19 19 C 1.50695 * 109.47265 * 169.99862 * 18 16 15 20 20 H 1.07998 * 120.00058 * 0.02562 * 19 18 16 21 21 C 1.37878 * 120.00029 * 180.02562 * 19 18 16 22 22 N 1.31514 * 120.00068 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99838 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47375 * 60.00140 * 23 21 19 25 25 H 1.48503 * 109.46739 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47278 * 299.99553 * 23 21 19 27 27 H 1.08005 * 119.99987 * 180.02562 * 1 2 3 28 28 H 1.07990 * 119.99779 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.99899 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46721 * 5.00117 * 3 2 1 31 31 H 1.09002 * 109.47006 * 244.99985 * 3 2 1 32 32 H 1.08002 * 119.96830 * 359.97438 * 5 4 3 33 33 H 1.07996 * 119.94886 * 180.02562 * 6 5 4 34 34 H 1.08004 * 119.96681 * 179.97438 * 7 6 5 35 35 H 1.08002 * 120.02985 * 180.31907 * 8 7 6 36 36 H 1.08996 * 109.47616 * 300.00329 * 11 10 9 37 37 H 1.09003 * 109.46954 * 60.00485 * 11 10 9 38 38 H 0.96702 * 113.99694 * 60.00178 * 14 12 11 39 39 H 1.09002 * 109.46521 * 298.50969 * 15 12 11 40 40 H 1.09003 * 109.47074 * 58.50277 * 15 12 11 41 41 H 1.09004 * 109.46880 * 65.47909 * 17 16 15 42 42 H 1.08999 * 109.47070 * 185.47954 * 17 16 15 43 43 H 1.08997 * 109.47041 * 305.48355 * 17 16 15 44 44 H 1.09001 * 109.47543 * 290.00735 * 18 16 15 45 45 H 1.09007 * 109.46574 * 50.00336 * 18 16 15 46 46 H 0.96998 * 120.00357 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0204 1.3326 1.1639 5 6 2.6459 1.9280 2.3530 6 6 3.5230 1.9531 3.4213 7 6 4.7774 1.3832 3.3024 8 6 5.1544 0.7813 2.1178 9 6 4.2780 0.7599 1.0423 10 8 4.6488 0.1737 -0.1264 11 6 5.9581 -0.3962 -0.1794 12 6 6.1940 -1.0042 -1.5635 13 1 5.4003 -1.7170 -1.7873 14 8 6.1933 0.0335 -2.5460 15 6 7.5447 -1.7227 -1.5815 16 7 7.7552 -2.3367 -2.8993 17 6 9.1652 -2.7019 -3.0908 18 6 6.8800 -3.5021 -3.0829 19 6 6.9411 -3.9550 -4.5189 20 1 7.5678 -3.4299 -5.2245 21 6 6.1970 -5.0397 -4.9320 22 7 5.4334 -5.6789 -4.0729 23 14 6.2734 -5.6014 -6.7119 24 1 7.6698 -5.9731 -7.0542 25 1 5.3876 -6.7787 -6.8978 26 1 5.8230 -4.4988 -7.5988 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5399 0.9352 0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 1.6669 2.3741 2.4481 33 1 3.2282 2.4186 4.3501 34 1 5.4611 1.4045 4.1383 35 1 6.1322 0.3318 2.0271 36 1 6.7002 0.3800 0.0073 37 1 6.0469 -1.1738 0.5793 38 1 6.8756 0.7050 -2.4092 39 1 8.3407 -1.0048 -1.3838 40 1 7.5547 -2.4968 -0.8141 41 1 9.4367 -3.4857 -2.3835 42 1 9.3117 -3.0640 -4.1084 43 1 9.7932 -1.8271 -2.9224 44 1 7.2111 -4.3115 -2.4322 45 1 5.8549 -3.2299 -2.8312 46 1 4.9102 -6.4422 -4.3634 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435533598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:51 Heat of formation + Delta-G solvation = -42.491776 kcal Electronic energy + Delta-G solvation = -24767.237664 eV Core-core repulsion = 21236.701503 eV Total energy + Delta-G solvation = -3530.536161 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.39361 -38.29909 -37.04213 -35.36183 -35.17883 -32.49605 -31.43358 -30.68569 -29.70467 -27.38274 -26.57507 -26.28320 -23.86630 -22.59464 -21.91628 -21.25197 -20.14510 -19.74652 -18.04287 -16.73323 -16.52431 -16.17604 -16.04093 -15.41697 -14.95046 -14.81053 -14.68423 -14.50469 -14.31725 -13.70733 -13.64297 -13.32196 -13.27450 -12.93612 -12.60107 -12.33596 -11.97922 -11.94962 -11.64115 -11.48552 -11.21235 -11.19136 -11.06756 -11.00648 -10.91956 -10.67915 -10.63921 -10.35603 -9.77659 -9.70433 -9.32868 -9.18113 -8.97660 -8.40974 -8.19478 -7.26772 -6.00994 -4.01705 1.17426 1.33552 2.33368 3.09764 3.35645 3.39538 3.43033 3.63241 4.43246 4.58528 4.64605 4.67133 4.76964 4.89899 5.01782 5.05721 5.10759 5.15467 5.24603 5.30491 5.35052 5.37587 5.46216 5.54198 5.57688 5.60561 5.74318 5.92325 5.96115 5.98611 6.03947 6.21285 6.28758 6.30674 6.36920 6.40368 6.61809 6.68305 6.72037 6.79638 7.23472 7.28156 7.39325 7.78847 8.03866 8.07881 8.17933 8.53399 9.04758 9.62115 11.10140 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.003181 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.288016 B = 8801.286761 C =10034.502141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 C -0.048 4.048 4 C -0.110 4.110 5 C -0.079 4.079 6 C -0.162 4.162 7 C -0.085 4.085 8 C -0.211 4.211 9 C 0.138 3.862 10 O -0.295 6.295 11 C 0.029 3.971 12 C 0.117 3.883 13 H 0.114 0.886 14 O -0.532 6.532 15 C 0.029 3.971 16 N -0.530 5.530 17 C 0.040 3.960 18 C 0.191 3.809 19 C -0.506 4.506 20 H 0.063 0.937 21 C 0.055 3.945 22 N -0.900 5.900 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.275 1.275 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.362 0.638 39 H 0.064 0.936 40 H 0.034 0.966 41 H 0.011 0.989 42 H 0.075 0.925 43 H 0.043 0.957 44 H -0.011 1.011 45 H 0.032 0.968 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.377 15.275 15.154 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.152 4.152 3 C -0.085 4.085 4 C -0.111 4.111 5 C -0.097 4.097 6 C -0.180 4.180 7 C -0.103 4.103 8 C -0.229 4.229 9 C 0.092 3.908 10 O -0.207 6.207 11 C -0.047 4.047 12 C 0.057 3.943 13 H 0.132 0.868 14 O -0.334 6.334 15 C -0.100 4.100 16 N -0.254 5.254 17 C -0.108 4.108 18 C 0.067 3.933 19 C -0.544 4.544 20 H 0.081 0.919 21 C -0.146 4.146 22 N -0.539 5.539 23 Si 0.726 3.274 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.201 1.201 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.128 0.872 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.207 0.793 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.030 0.970 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.007 0.993 45 H 0.050 0.950 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.231 15.077 14.368 21.076 hybrid contribution 0.934 -0.884 0.285 1.317 sum -2.297 14.193 14.653 20.528 Atomic orbital electron populations 1.23775 0.95772 1.01611 1.02916 1.22891 0.95725 0.98401 0.98183 1.19605 0.96389 0.95684 0.96778 1.19146 0.92944 1.02284 0.96726 1.20861 0.99263 0.97880 0.91704 1.20988 0.94597 1.03369 0.99086 1.20908 0.96289 0.96360 0.96735 1.21268 1.00728 1.06640 0.94295 1.18944 0.93253 0.93169 0.85470 1.86198 1.33436 1.69673 1.31440 1.23709 0.82710 0.97564 1.00767 1.21950 0.98774 0.89521 0.84033 0.86816 1.86742 1.57808 1.37409 1.51454 1.22562 0.96040 0.98278 0.93134 1.62015 1.05639 1.32699 1.25086 1.22202 0.88957 0.97563 1.02095 1.19804 0.91790 0.84661 0.97088 1.21092 1.26328 1.12418 0.94582 0.91904 1.24981 0.95350 0.96516 0.97766 1.69940 1.28470 1.21077 1.34456 0.86552 0.77819 0.78042 0.84952 1.20336 1.21375 1.20081 0.88526 0.88838 0.87152 0.90899 0.89146 0.85635 0.86128 0.86049 0.85534 0.91985 0.91337 0.79270 0.91799 0.94795 0.97042 0.90615 0.93799 0.99291 0.94986 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.20 14.32 29.01 0.42 -1.79 16 2 C -0.13 -1.66 9.50 -36.03 -0.34 -2.00 16 3 C -0.05 -0.56 5.51 -29.04 -0.16 -0.72 16 4 C -0.11 -1.34 5.13 -104.47 -0.54 -1.88 16 5 C -0.08 -0.81 9.68 -39.61 -0.38 -1.19 16 6 C -0.16 -1.54 10.04 -39.56 -0.40 -1.94 16 7 C -0.08 -0.84 10.04 -39.61 -0.40 -1.23 16 8 C -0.21 -2.39 9.04 -39.44 -0.36 -2.74 16 9 C 0.14 1.81 6.66 -39.22 -0.26 1.55 16 10 O -0.29 -4.31 9.24 -24.29 -0.22 -4.54 16 11 C 0.03 0.37 4.37 37.16 0.16 0.53 16 12 C 0.12 1.92 3.27 -26.73 -0.09 1.83 16 13 H 0.11 2.26 6.55 -51.93 -0.34 1.92 16 14 O -0.53 -9.14 13.20 -40.09 -0.53 -9.67 16 15 C 0.03 0.49 4.63 -3.83 -0.02 0.47 16 16 N -0.53 -11.27 4.60 -244.36 -1.12 -12.40 16 17 C 0.04 0.77 9.32 60.07 0.56 1.33 16 18 C 0.19 4.99 4.57 -4.98 -0.02 4.96 16 19 C -0.51 -14.38 8.54 -34.44 -0.29 -14.67 16 20 H 0.06 1.77 7.10 -52.49 -0.37 1.40 16 21 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 23 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H 0.10 0.98 8.06 -52.48 -0.42 0.56 16 28 H 0.09 0.86 7.84 -52.49 -0.41 0.45 16 29 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 30 H 0.07 0.71 7.70 -51.93 -0.40 0.31 16 31 H 0.09 1.19 7.69 -51.93 -0.40 0.79 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 35 H 0.13 1.25 6.30 -52.49 -0.33 0.92 16 36 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 37 H 0.07 0.82 7.65 -51.93 -0.40 0.42 16 38 H 0.36 4.61 9.05 45.56 0.41 5.03 16 39 H 0.06 0.87 7.88 -51.93 -0.41 0.47 16 40 H 0.03 0.56 8.05 -51.93 -0.42 0.14 16 41 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 42 H 0.08 1.55 6.90 -51.93 -0.36 1.19 16 43 H 0.04 0.69 7.97 -51.93 -0.41 0.27 16 44 H -0.01 -0.29 8.11 -51.93 -0.42 -0.72 16 45 H 0.03 0.89 6.38 -51.93 -0.33 0.56 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 380.84 15.07 5.74 5.74 Total: -1.00 -32.45 380.84 -9.30 -41.75 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.66 Total: 4.42 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -2.21 Total: -16.01 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: -0.39 Total: -38.62 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.75 Total: -14.21 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.45 -9.30 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435533598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.746 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds