Wall clock time and date at job start Tue Mar 31 2020 10:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00199 * 2 1 4 4 C 1.50698 * 109.47190 * 124.99825 * 3 2 1 5 5 C 1.38162 * 120.03204 * 265.02524 * 4 3 2 6 6 C 1.38244 * 120.06067 * 179.97438 * 5 4 3 7 7 C 1.38292 * 120.10581 * 0.02562 * 6 5 4 8 8 C 1.38115 * 120.05782 * 359.67469 * 7 6 5 9 9 C 1.38715 * 120.02775 * 85.00408 * 4 3 2 10 10 O 1.35903 * 120.05180 * 0.02562 * 9 4 3 11 11 C 1.42901 * 116.99710 * 180.02562 * 10 9 4 12 12 C 1.52997 * 109.47198 * 180.02562 * 11 10 9 13 13 H 1.09006 * 109.47237 * 305.00178 * 12 11 10 14 14 O 1.42901 * 109.47106 * 64.99835 * 12 11 10 15 15 C 1.53001 * 109.47572 * 185.00440 * 12 11 10 16 16 N 1.46894 * 109.47404 * 178.51318 * 15 12 11 17 17 C 1.46904 * 111.00240 * 164.00842 * 16 15 12 18 18 C 1.46904 * 110.99876 * 287.95689 * 16 15 12 19 19 C 1.50695 * 109.47265 * 169.99862 * 18 16 15 20 20 H 1.07998 * 120.00058 * 0.02562 * 19 18 16 21 21 C 1.37878 * 120.00029 * 180.02562 * 19 18 16 22 22 N 1.31514 * 120.00068 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99838 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47375 * 60.00140 * 23 21 19 25 25 H 1.48503 * 109.46739 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47278 * 299.99553 * 23 21 19 27 27 H 1.08005 * 119.99987 * 180.02562 * 1 2 3 28 28 H 1.07990 * 119.99779 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.99899 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46721 * 5.00117 * 3 2 1 31 31 H 1.09002 * 109.47006 * 244.99985 * 3 2 1 32 32 H 1.08002 * 119.96830 * 359.97438 * 5 4 3 33 33 H 1.07996 * 119.94886 * 180.02562 * 6 5 4 34 34 H 1.08004 * 119.96681 * 179.97438 * 7 6 5 35 35 H 1.08002 * 120.02985 * 180.31907 * 8 7 6 36 36 H 1.08996 * 109.47616 * 300.00329 * 11 10 9 37 37 H 1.09003 * 109.46954 * 60.00485 * 11 10 9 38 38 H 0.96702 * 113.99694 * 60.00178 * 14 12 11 39 39 H 1.09002 * 109.46521 * 298.50969 * 15 12 11 40 40 H 1.09003 * 109.47074 * 58.50277 * 15 12 11 41 41 H 1.09004 * 109.46880 * 65.47909 * 17 16 15 42 42 H 1.08999 * 109.47070 * 185.47954 * 17 16 15 43 43 H 1.08997 * 109.47041 * 305.48355 * 17 16 15 44 44 H 1.09001 * 109.47543 * 290.00735 * 18 16 15 45 45 H 1.09007 * 109.46574 * 50.00336 * 18 16 15 46 46 H 0.96998 * 120.00357 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0204 1.3326 1.1639 5 6 2.6459 1.9280 2.3530 6 6 3.5230 1.9531 3.4213 7 6 4.7774 1.3832 3.3024 8 6 5.1544 0.7813 2.1178 9 6 4.2780 0.7599 1.0423 10 8 4.6488 0.1737 -0.1264 11 6 5.9581 -0.3962 -0.1794 12 6 6.1940 -1.0042 -1.5635 13 1 5.4003 -1.7170 -1.7873 14 8 6.1933 0.0335 -2.5460 15 6 7.5447 -1.7227 -1.5815 16 7 7.7552 -2.3367 -2.8993 17 6 9.1652 -2.7019 -3.0908 18 6 6.8800 -3.5021 -3.0829 19 6 6.9411 -3.9550 -4.5189 20 1 7.5678 -3.4299 -5.2245 21 6 6.1970 -5.0397 -4.9320 22 7 5.4334 -5.6789 -4.0729 23 14 6.2734 -5.6014 -6.7119 24 1 7.6698 -5.9731 -7.0542 25 1 5.3876 -6.7787 -6.8978 26 1 5.8230 -4.4988 -7.5988 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5399 0.9352 0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 1.6669 2.3741 2.4481 33 1 3.2282 2.4186 4.3501 34 1 5.4611 1.4045 4.1383 35 1 6.1322 0.3318 2.0271 36 1 6.7002 0.3800 0.0073 37 1 6.0469 -1.1738 0.5793 38 1 6.8756 0.7050 -2.4092 39 1 8.3407 -1.0048 -1.3838 40 1 7.5547 -2.4968 -0.8141 41 1 9.4367 -3.4857 -2.3835 42 1 9.3117 -3.0640 -4.1084 43 1 9.7932 -1.8271 -2.9224 44 1 7.2111 -4.3115 -2.4322 45 1 5.8549 -3.2299 -2.8312 46 1 4.9102 -6.4422 -4.3634 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435533598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:50 Heat of formation + Delta-G solvation = -64.417680 kcal Electronic energy + Delta-G solvation = -24768.188443 eV Core-core repulsion = 21236.701503 eV Total energy + Delta-G solvation = -3531.486940 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.30679 -39.53141 -38.23869 -36.87536 -36.06330 -34.62939 -32.35612 -31.78996 -30.69752 -29.39263 -27.80755 -27.21051 -25.63815 -23.90432 -22.79264 -22.34981 -21.74143 -20.68665 -19.00685 -18.60148 -17.78715 -17.48456 -16.92548 -16.70568 -16.48778 -16.06118 -15.89089 -15.68902 -15.50786 -15.11327 -14.98524 -14.51229 -14.31894 -14.08004 -13.94701 -13.77011 -13.32570 -13.12174 -12.95092 -12.82372 -12.64980 -12.56048 -12.41959 -12.35859 -12.23962 -12.08412 -11.92103 -11.79216 -11.49634 -11.34740 -10.92932 -10.61237 -10.25334 -9.77540 -9.06732 -8.99626 -8.21699 -6.31273 0.37734 0.51164 1.38816 1.40711 1.43063 1.50532 2.09945 2.39622 2.82858 3.10750 3.26372 3.53729 3.78766 3.86310 3.87681 3.97078 4.09505 4.12369 4.23825 4.26419 4.30464 4.32102 4.45959 4.49324 4.54294 4.60940 4.69401 4.75151 4.75327 4.93717 4.98732 5.05587 5.07842 5.14339 5.16961 5.29007 5.41630 5.52070 5.61354 5.63040 5.72473 5.86714 5.92002 6.04349 6.30946 6.47230 6.61301 6.84110 6.98262 7.38052 8.89393 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.003181 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.288016 B = 8801.286761 C =10034.502141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.159 4.159 3 C -0.042 4.042 4 C -0.129 4.129 5 C -0.082 4.082 6 C -0.160 4.160 7 C -0.088 4.088 8 C -0.219 4.219 9 C 0.108 3.892 10 O -0.322 6.322 11 C 0.039 3.961 12 C 0.124 3.876 13 H 0.064 0.936 14 O -0.555 6.555 15 C 0.031 3.969 16 N -0.543 5.543 17 C 0.042 3.958 18 C 0.208 3.792 19 C -0.524 4.524 20 H 0.062 0.938 21 C 0.000 4.000 22 N -0.935 5.935 23 Si 0.969 3.031 24 H -0.264 1.264 25 H -0.282 1.282 26 H -0.271 1.271 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.382 0.618 39 H 0.108 0.892 40 H 0.035 0.965 41 H 0.010 0.990 42 H 0.055 0.945 43 H 0.086 0.914 44 H -0.039 1.039 45 H 0.002 0.998 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.701 17.141 16.328 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.177 4.177 3 C -0.078 4.078 4 C -0.130 4.130 5 C -0.100 4.100 6 C -0.178 4.178 7 C -0.106 4.106 8 C -0.237 4.237 9 C 0.063 3.937 10 O -0.236 6.236 11 C -0.036 4.036 12 C 0.064 3.936 13 H 0.082 0.918 14 O -0.361 6.361 15 C -0.097 4.097 16 N -0.267 5.267 17 C -0.106 4.106 18 C 0.082 3.918 19 C -0.563 4.563 20 H 0.080 0.920 21 C -0.198 4.198 22 N -0.576 5.576 23 Si 0.793 3.207 24 H -0.189 1.189 25 H -0.208 1.208 26 H -0.196 1.196 27 H 0.119 0.881 28 H 0.135 0.865 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.165 0.835 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.156 0.844 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.231 0.769 39 H 0.126 0.874 40 H 0.053 0.947 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.105 0.895 44 H -0.021 1.021 45 H 0.020 0.980 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.528 16.968 15.557 23.159 hybrid contribution 0.685 -1.395 0.008 1.554 sum -1.843 15.573 15.566 22.095 Atomic orbital electron populations 1.23986 0.95101 1.02896 1.00367 1.22829 0.96448 0.97848 1.00623 1.19531 0.96532 0.95927 0.95855 1.19379 0.92888 1.03079 0.97649 1.21166 1.00444 0.97323 0.91095 1.21393 0.94171 1.02386 0.99814 1.21289 0.97001 0.95416 0.96854 1.21491 1.01002 1.06880 0.94355 1.19247 0.94389 0.94490 0.85577 1.86145 1.34126 1.70434 1.32888 1.23532 0.83261 0.98555 0.98287 1.21677 0.97136 0.88909 0.85903 0.91821 1.86684 1.59113 1.38128 1.52217 1.22660 0.97518 0.98817 0.90735 1.61885 1.06216 1.30315 1.28304 1.22228 0.88054 0.99454 1.00890 1.19399 0.91296 0.85568 0.95540 1.21452 1.26354 1.12739 0.95707 0.91993 1.25930 0.94800 0.96584 1.02498 1.70076 1.29247 1.21579 1.36694 0.85446 0.78479 0.77619 0.79155 1.18895 1.20763 1.19584 0.88132 0.86537 0.89901 0.88684 0.91592 0.83476 0.83273 0.83372 0.84402 0.88845 0.90601 0.76938 0.87410 0.94695 0.97098 0.92649 0.89543 1.02101 0.98019 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.94 14.32 67.78 0.97 -2.97 16 2 C -0.16 -4.14 9.50 25.65 0.24 -3.89 16 3 C -0.04 -1.00 5.51 29.10 0.16 -0.84 16 4 C -0.13 -3.14 5.13 -19.77 -0.10 -3.24 16 5 C -0.08 -1.54 9.68 22.25 0.22 -1.33 16 6 C -0.16 -2.59 10.04 22.28 0.22 -2.36 16 7 C -0.09 -1.51 10.04 22.25 0.22 -1.28 16 8 C -0.22 -4.67 9.04 22.36 0.20 -4.47 16 9 C 0.11 2.86 6.66 22.51 0.15 3.01 16 10 O -0.32 -9.87 9.24 -87.82 -0.81 -10.68 16 11 C 0.04 1.02 4.37 71.98 0.31 1.34 16 12 C 0.12 4.20 3.27 30.59 0.10 4.30 16 13 H 0.06 2.79 6.55 -2.38 -0.02 2.78 16 14 O -0.56 -19.44 13.20 -144.34 -1.90 -21.35 16 15 C 0.03 1.03 4.63 86.30 0.40 1.43 16 16 N -0.54 -23.34 4.60 -927.03 -4.27 -27.61 16 17 C 0.04 1.55 9.32 127.69 1.19 2.74 16 18 C 0.21 11.39 4.57 85.55 0.39 11.78 16 19 C -0.52 -30.74 8.54 25.60 0.22 -30.52 16 20 H 0.06 3.56 7.10 -2.91 -0.02 3.54 16 21 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 22 N -0.94 -57.97 13.29 21.45 0.28 -57.68 16 23 Si 0.97 45.64 29.54 68.60 2.03 47.67 16 24 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 27 H 0.10 2.01 8.06 -2.91 -0.02 1.98 16 28 H 0.12 1.91 7.84 -2.92 -0.02 1.89 16 29 H 0.08 2.55 8.06 -2.91 -0.02 2.53 16 30 H 0.09 1.77 7.70 -2.39 -0.02 1.75 16 31 H 0.07 1.87 7.69 -2.39 -0.02 1.85 16 32 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 35 H 0.14 2.49 6.30 -2.91 -0.02 2.47 16 36 H 0.09 1.81 7.67 -2.39 -0.02 1.79 16 37 H 0.08 1.82 7.65 -2.39 -0.02 1.80 16 38 H 0.38 9.35 9.05 -74.06 -0.67 8.68 16 39 H 0.11 2.60 7.88 -2.39 -0.02 2.59 16 40 H 0.03 1.15 8.05 -2.39 -0.02 1.13 16 41 H 0.01 0.39 8.13 -2.39 -0.02 0.37 16 42 H 0.05 2.25 6.90 -2.39 -0.02 2.24 16 43 H 0.09 2.46 7.97 -2.39 -0.02 2.44 16 44 H -0.04 -2.27 8.11 -2.39 -0.02 -2.29 16 45 H 0.00 0.11 6.38 -2.38 -0.02 0.09 16 46 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -74.19 380.84 0.98 -73.21 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.28 Total: 22.32 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 5.36 Total: -25.87 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -3.98 Total: -85.29 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -2.72 Total: -32.03 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -74.19 0.98 -73.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435533598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.793 kcal (2) G-P(sol) polarization free energy of solvation -74.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds