Wall clock time and date at job start Tue Mar 31 2020 10:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50695 * 120.00329 * 2 1 4 4 C 1.50707 * 109.47089 * 124.99634 * 3 2 1 5 5 C 1.38165 * 120.02734 * 265.02249 * 4 3 2 6 6 C 1.38237 * 120.05383 * 179.97438 * 5 4 3 7 7 C 1.38291 * 120.11556 * 0.02562 * 6 5 4 8 8 C 1.38125 * 120.04906 * 359.68226 * 7 6 5 9 9 C 1.38708 * 120.02381 * 85.00282 * 4 3 2 10 10 O 1.35899 * 120.05882 * 0.02562 * 9 4 3 11 11 C 1.42900 * 116.99884 * 179.97438 * 10 9 4 12 12 C 1.53002 * 109.46918 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.46823 * 55.00822 * 12 11 10 14 14 O 1.42899 * 109.47103 * 295.00344 * 12 11 10 15 15 C 1.53000 * 109.46726 * 175.00484 * 12 11 10 16 16 N 1.46904 * 109.46815 * 180.45976 * 15 12 11 17 17 C 1.46899 * 110.99898 * 199.84806 * 16 15 12 18 18 C 1.46907 * 110.99778 * 75.89878 * 16 15 12 19 19 C 1.50705 * 109.46801 * 190.00021 * 18 16 15 20 20 H 1.08000 * 120.00039 * 359.97438 * 19 18 16 21 21 C 1.37881 * 119.99700 * 179.97438 * 19 18 16 22 22 N 1.31512 * 120.00014 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99637 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47385 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46806 * 120.00084 * 23 21 19 26 26 H 1.48501 * 109.47151 * 240.00031 * 23 21 19 27 27 H 1.08002 * 120.00126 * 179.97438 * 1 2 3 28 28 H 1.08005 * 120.00010 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99537 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47176 * 4.99932 * 3 2 1 31 31 H 1.08995 * 109.47412 * 244.99838 * 3 2 1 32 32 H 1.08001 * 119.97470 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.94476 * 180.02562 * 6 5 4 34 34 H 1.07998 * 119.97774 * 179.97438 * 7 6 5 35 35 H 1.08005 * 120.02510 * 180.31848 * 8 7 6 36 36 H 1.09001 * 109.46831 * 60.00661 * 11 10 9 37 37 H 1.08996 * 109.47545 * 300.00491 * 11 10 9 38 38 H 0.96698 * 114.00245 * 299.99745 * 14 12 11 39 39 H 1.09000 * 109.47349 * 300.45489 * 15 12 11 40 40 H 1.09001 * 109.47706 * 60.46216 * 15 12 11 41 41 H 1.08999 * 109.47104 * 64.82506 * 17 16 15 42 42 H 1.09004 * 109.47084 * 184.82138 * 17 16 15 43 43 H 1.09003 * 109.47573 * 304.82062 * 17 16 15 44 44 H 1.09002 * 109.46729 * 309.99402 * 18 16 15 45 45 H 1.08997 * 109.47420 * 69.99907 * 18 16 15 46 46 H 0.96996 * 119.99686 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0204 1.3326 1.1640 5 6 2.6458 1.9280 2.3531 6 6 3.5229 1.9531 3.4213 7 6 4.7773 1.3831 3.3026 8 6 5.1543 0.7813 2.1179 9 6 4.2778 0.7597 1.0424 10 8 4.6487 0.1736 -0.1262 11 6 5.9585 -0.3954 -0.1795 12 6 6.1943 -1.0036 -1.5635 13 1 6.0179 -0.2467 -2.3278 14 8 5.2979 -2.0987 -1.7617 15 6 7.6376 -1.5016 -1.6625 16 7 7.8672 -2.0756 -2.9951 17 6 9.0356 -2.9660 -2.9906 18 6 8.0146 -1.0190 -4.0051 19 6 8.0020 -1.6340 -5.3809 20 1 7.8956 -2.7028 -5.4937 21 6 8.1262 -0.8321 -6.4956 22 7 8.2552 0.4695 -6.3583 23 14 8.1113 -1.5945 -8.2009 24 1 7.9546 -3.0665 -8.0837 25 1 6.9781 -1.0371 -8.9823 26 1 9.3887 -1.2857 -8.8924 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8499 -0.9354 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4025 -0.9313 32 1 1.6665 2.3735 2.4484 33 1 3.2280 2.4187 4.3501 34 1 5.4609 1.4044 4.1384 35 1 6.1321 0.3317 2.0274 36 1 6.0480 -1.1728 0.5793 37 1 6.7000 0.3813 0.0068 38 1 5.3988 -2.8114 -1.1159 39 1 8.3214 -0.6678 -1.5033 40 1 7.8117 -2.2643 -0.9035 41 1 8.8358 -3.8242 -2.3490 42 1 9.2344 -3.3098 -4.0057 43 1 9.9035 -2.4249 -2.6137 44 1 7.1891 -0.3128 -3.9152 45 1 8.9584 -0.4964 -3.8493 46 1 8.3423 1.0336 -7.1425 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435533599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:56 Heat of formation + Delta-G solvation = -42.857125 kcal Electronic energy + Delta-G solvation = -24722.283300 eV Core-core repulsion = 21191.731296 eV Total energy + Delta-G solvation = -3530.552004 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.39906 -38.29344 -37.04024 -35.37003 -35.20181 -32.50165 -31.44866 -30.69331 -29.71350 -27.37843 -26.58150 -26.29270 -23.88624 -22.57649 -21.92530 -21.23904 -20.16917 -19.77780 -18.05255 -16.71336 -16.54943 -16.15842 -16.04984 -15.46405 -14.92685 -14.85238 -14.68147 -14.48908 -14.34154 -13.69866 -13.63755 -13.34105 -13.27288 -12.93076 -12.58937 -12.37990 -11.98372 -11.98062 -11.63752 -11.51972 -11.22096 -11.21299 -11.07452 -11.01027 -10.90538 -10.64064 -10.63868 -10.36944 -9.79564 -9.71502 -9.36143 -9.15629 -8.98308 -8.42838 -8.20103 -7.26543 -6.01961 -4.02505 1.16851 1.33065 2.29765 3.09255 3.32572 3.40031 3.45182 3.62659 4.42840 4.58169 4.63938 4.66633 4.76859 4.88502 5.00565 5.04034 5.10901 5.13999 5.22913 5.29648 5.34364 5.37480 5.46375 5.53085 5.56341 5.60192 5.73497 5.92060 5.92213 5.98034 6.07929 6.20613 6.26679 6.30004 6.36303 6.39753 6.58864 6.68978 6.70673 6.76236 7.23188 7.28316 7.38685 7.79041 8.03473 8.07498 8.17781 8.52811 9.04772 9.61482 11.09246 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016388 B = 0.002998 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.202836 B = 9337.435946 C =10103.143824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.049 4.049 4 C -0.110 4.110 5 C -0.079 4.079 6 C -0.162 4.162 7 C -0.085 4.085 8 C -0.211 4.211 9 C 0.138 3.862 10 O -0.295 6.295 11 C 0.028 3.972 12 C 0.119 3.881 13 H 0.113 0.887 14 O -0.531 6.531 15 C 0.029 3.971 16 N -0.530 5.530 17 C 0.038 3.962 18 C 0.191 3.809 19 C -0.504 4.504 20 H 0.064 0.936 21 C 0.054 3.946 22 N -0.899 5.899 23 Si 0.898 3.102 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.286 1.286 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.362 0.638 39 H 0.036 0.964 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.078 0.922 43 H 0.008 0.992 44 H 0.031 0.969 45 H -0.010 1.010 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.780 1.159 20.372 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.149 4.149 3 C -0.085 4.085 4 C -0.111 4.111 5 C -0.097 4.097 6 C -0.180 4.180 7 C -0.103 4.103 8 C -0.229 4.229 9 C 0.092 3.908 10 O -0.208 6.208 11 C -0.048 4.048 12 C 0.059 3.941 13 H 0.131 0.869 14 O -0.334 6.334 15 C -0.100 4.100 16 N -0.254 5.254 17 C -0.111 4.111 18 C 0.066 3.934 19 C -0.543 4.543 20 H 0.082 0.918 21 C -0.147 4.147 22 N -0.539 5.539 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.212 1.212 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.207 0.793 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.027 0.973 44 H 0.049 0.951 45 H 0.007 0.993 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.464 1.384 19.430 21.657 hybrid contribution 1.304 -0.071 -0.003 1.306 sum -8.160 1.313 19.428 21.113 Atomic orbital electron populations 1.23768 0.95780 1.01573 1.03147 1.22875 0.95645 0.98396 0.97975 1.19608 0.96431 0.95706 0.96794 1.19140 0.92974 1.02308 0.96696 1.20860 0.99296 0.97836 0.91705 1.20987 0.94611 1.03332 0.99111 1.20912 0.96255 0.96342 0.96767 1.21273 1.00644 1.06723 0.94294 1.18941 0.93244 0.93162 0.85483 1.86196 1.33489 1.69575 1.31501 1.23715 0.82911 0.97747 1.00398 1.21925 0.89312 0.89391 0.93518 0.86935 1.86736 1.59426 1.30360 1.56868 1.22560 0.95096 0.98340 0.94040 1.61993 1.38765 1.21812 1.02820 1.22234 0.90679 0.95550 1.02606 1.19807 0.95422 0.88711 0.89477 1.21177 1.48948 0.94153 0.90006 0.91760 1.24990 0.95464 0.94812 0.99415 1.69963 1.50597 1.03544 1.29815 0.86440 0.77445 0.79491 0.84049 1.19636 1.20964 1.21180 0.88617 0.88831 0.87144 0.90862 0.89181 0.85631 0.86126 0.86041 0.85530 0.91990 0.91329 0.79305 0.94606 0.91877 0.93668 0.90279 0.97301 0.95062 0.99270 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.07 14.32 29.02 0.42 -1.66 16 2 C -0.13 -1.53 9.50 -36.03 -0.34 -1.87 16 3 C -0.05 -0.56 5.51 -29.03 -0.16 -0.73 16 4 C -0.11 -1.33 5.13 -104.47 -0.54 -1.87 16 5 C -0.08 -0.81 9.68 -39.61 -0.38 -1.19 16 6 C -0.16 -1.53 10.04 -39.56 -0.40 -1.93 16 7 C -0.08 -0.83 10.04 -39.60 -0.40 -1.23 16 8 C -0.21 -2.38 9.04 -39.43 -0.36 -2.73 16 9 C 0.14 1.80 6.66 -39.22 -0.26 1.54 16 10 O -0.29 -4.28 9.24 -24.28 -0.22 -4.51 16 11 C 0.03 0.37 4.37 37.16 0.16 0.53 16 12 C 0.12 1.93 3.31 -26.73 -0.09 1.84 16 13 H 0.11 2.21 6.78 -51.93 -0.35 1.86 16 14 O -0.53 -9.06 13.18 -40.09 -0.53 -9.59 16 15 C 0.03 0.48 4.66 -3.82 -0.02 0.47 16 16 N -0.53 -11.24 4.56 -244.36 -1.11 -12.36 16 17 C 0.04 0.72 9.37 60.06 0.56 1.28 16 18 C 0.19 4.96 4.55 -4.97 -0.02 4.93 16 19 C -0.50 -14.29 8.39 -34.44 -0.29 -14.58 16 20 H 0.06 1.82 7.16 -52.49 -0.38 1.44 16 21 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 23 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 27 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 28 H 0.09 0.82 7.84 -52.48 -0.41 0.41 16 29 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 30 H 0.07 0.72 7.70 -51.93 -0.40 0.32 16 31 H 0.09 1.19 7.69 -51.93 -0.40 0.79 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.13 1.25 6.30 -52.48 -0.33 0.92 16 36 H 0.06 0.66 7.65 -51.93 -0.40 0.26 16 37 H 0.07 0.81 7.67 -51.93 -0.40 0.42 16 38 H 0.36 4.59 9.05 45.56 0.41 5.00 16 39 H 0.04 0.60 8.00 -51.93 -0.42 0.18 16 40 H 0.06 0.86 7.94 -51.93 -0.41 0.45 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.64 6.66 -51.93 -0.35 1.29 16 43 H 0.01 0.16 8.13 -51.93 -0.42 -0.27 16 44 H 0.03 0.87 6.63 -51.93 -0.34 0.53 16 45 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 381.21 15.07 5.74 5.74 Total: -1.00 -32.35 381.21 -9.30 -41.65 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.69 Total: 4.08 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -2.21 Total: -15.74 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: -0.38 Total: -38.51 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.75 Total: -14.10 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.35 -9.30 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435533599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.209 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds