Wall clock time and date at job start Tue Mar 31 2020 10:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50695 * 120.00329 * 2 1 4 4 C 1.50707 * 109.47089 * 124.99634 * 3 2 1 5 5 C 1.38165 * 120.02734 * 265.02249 * 4 3 2 6 6 C 1.38237 * 120.05383 * 179.97438 * 5 4 3 7 7 C 1.38291 * 120.11556 * 0.02562 * 6 5 4 8 8 C 1.38125 * 120.04906 * 359.68226 * 7 6 5 9 9 C 1.38708 * 120.02381 * 85.00282 * 4 3 2 10 10 O 1.35899 * 120.05882 * 0.02562 * 9 4 3 11 11 C 1.42900 * 116.99884 * 179.97438 * 10 9 4 12 12 C 1.53002 * 109.46918 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.46823 * 55.00822 * 12 11 10 14 14 O 1.42899 * 109.47103 * 295.00344 * 12 11 10 15 15 C 1.53000 * 109.46726 * 175.00484 * 12 11 10 16 16 N 1.46904 * 109.46815 * 180.45976 * 15 12 11 17 17 C 1.46899 * 110.99898 * 199.84806 * 16 15 12 18 18 C 1.46907 * 110.99778 * 75.89878 * 16 15 12 19 19 C 1.50705 * 109.46801 * 190.00021 * 18 16 15 20 20 H 1.08000 * 120.00039 * 359.97438 * 19 18 16 21 21 C 1.37881 * 119.99700 * 179.97438 * 19 18 16 22 22 N 1.31512 * 120.00014 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99637 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47385 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46806 * 120.00084 * 23 21 19 26 26 H 1.48501 * 109.47151 * 240.00031 * 23 21 19 27 27 H 1.08002 * 120.00126 * 179.97438 * 1 2 3 28 28 H 1.08005 * 120.00010 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99537 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47176 * 4.99932 * 3 2 1 31 31 H 1.08995 * 109.47412 * 244.99838 * 3 2 1 32 32 H 1.08001 * 119.97470 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.94476 * 180.02562 * 6 5 4 34 34 H 1.07998 * 119.97774 * 179.97438 * 7 6 5 35 35 H 1.08005 * 120.02510 * 180.31848 * 8 7 6 36 36 H 1.09001 * 109.46831 * 60.00661 * 11 10 9 37 37 H 1.08996 * 109.47545 * 300.00491 * 11 10 9 38 38 H 0.96698 * 114.00245 * 299.99745 * 14 12 11 39 39 H 1.09000 * 109.47349 * 300.45489 * 15 12 11 40 40 H 1.09001 * 109.47706 * 60.46216 * 15 12 11 41 41 H 1.08999 * 109.47104 * 64.82506 * 17 16 15 42 42 H 1.09004 * 109.47084 * 184.82138 * 17 16 15 43 43 H 1.09003 * 109.47573 * 304.82062 * 17 16 15 44 44 H 1.09002 * 109.46729 * 309.99402 * 18 16 15 45 45 H 1.08997 * 109.47420 * 69.99907 * 18 16 15 46 46 H 0.96996 * 119.99686 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0204 1.3326 1.1640 5 6 2.6458 1.9280 2.3531 6 6 3.5229 1.9531 3.4213 7 6 4.7773 1.3831 3.3026 8 6 5.1543 0.7813 2.1179 9 6 4.2778 0.7597 1.0424 10 8 4.6487 0.1736 -0.1262 11 6 5.9585 -0.3954 -0.1795 12 6 6.1943 -1.0036 -1.5635 13 1 6.0179 -0.2467 -2.3278 14 8 5.2979 -2.0987 -1.7617 15 6 7.6376 -1.5016 -1.6625 16 7 7.8672 -2.0756 -2.9951 17 6 9.0356 -2.9660 -2.9906 18 6 8.0146 -1.0190 -4.0051 19 6 8.0020 -1.6340 -5.3809 20 1 7.8956 -2.7028 -5.4937 21 6 8.1262 -0.8321 -6.4956 22 7 8.2552 0.4695 -6.3583 23 14 8.1113 -1.5945 -8.2009 24 1 7.9546 -3.0665 -8.0837 25 1 6.9781 -1.0371 -8.9823 26 1 9.3887 -1.2857 -8.8924 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8499 -0.9354 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4025 -0.9313 32 1 1.6665 2.3735 2.4484 33 1 3.2280 2.4187 4.3501 34 1 5.4609 1.4044 4.1384 35 1 6.1321 0.3317 2.0274 36 1 6.0480 -1.1728 0.5793 37 1 6.7000 0.3813 0.0068 38 1 5.3988 -2.8114 -1.1159 39 1 8.3214 -0.6678 -1.5033 40 1 7.8117 -2.2643 -0.9035 41 1 8.8358 -3.8242 -2.3490 42 1 9.2344 -3.3098 -4.0057 43 1 9.9035 -2.4249 -2.6137 44 1 7.1891 -0.3128 -3.9152 45 1 8.9584 -0.4964 -3.8493 46 1 8.3423 1.0336 -7.1425 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435533599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:55 Heat of formation + Delta-G solvation = -64.555650 kcal Electronic energy + Delta-G solvation = -24723.224219 eV Core-core repulsion = 21191.731296 eV Total energy + Delta-G solvation = -3531.492923 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.30510 -39.51490 -38.23523 -36.87794 -36.04732 -34.62639 -32.34591 -31.79101 -30.69941 -29.37882 -27.80529 -27.20785 -25.64612 -23.87641 -22.79069 -22.33581 -21.75954 -20.66009 -19.01051 -18.58856 -17.80026 -17.44744 -16.92415 -16.71545 -16.50243 -16.04891 -15.88112 -15.64482 -15.50756 -15.12281 -14.96390 -14.52858 -14.28217 -14.05329 -13.95726 -13.80162 -13.33316 -13.14972 -12.94047 -12.81500 -12.61728 -12.58354 -12.40953 -12.32610 -12.23471 -12.06755 -11.91301 -11.79503 -11.50994 -11.32295 -10.92113 -10.62832 -10.22594 -9.77475 -9.06655 -8.98435 -8.21932 -6.31164 0.37703 0.51139 1.38752 1.40551 1.44065 1.53758 2.09991 2.39694 2.82866 3.10718 3.26693 3.54279 3.79507 3.86352 3.88148 3.96937 4.10484 4.13851 4.24385 4.26578 4.31504 4.32525 4.46690 4.49106 4.53326 4.62936 4.69168 4.75670 4.75892 4.93702 4.99733 5.07966 5.08613 5.14654 5.18208 5.28578 5.41719 5.52086 5.61289 5.63712 5.75270 5.89191 5.92070 6.04800 6.31587 6.47245 6.61557 6.84788 6.97987 7.38206 8.89576 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016388 B = 0.002998 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.202836 B = 9337.435946 C =10103.143824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.154 4.154 3 C -0.044 4.044 4 C -0.129 4.129 5 C -0.083 4.083 6 C -0.160 4.160 7 C -0.088 4.088 8 C -0.218 4.218 9 C 0.108 3.892 10 O -0.322 6.322 11 C 0.039 3.961 12 C 0.126 3.874 13 H 0.064 0.936 14 O -0.555 6.555 15 C 0.031 3.969 16 N -0.543 5.543 17 C 0.039 3.961 18 C 0.208 3.792 19 C -0.522 4.522 20 H 0.062 0.938 21 C -0.001 4.001 22 N -0.935 5.935 23 Si 0.969 3.031 24 H -0.263 1.263 25 H -0.280 1.280 26 H -0.276 1.276 27 H 0.105 0.895 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.381 0.619 39 H 0.036 0.964 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.055 0.945 43 H 0.015 0.985 44 H 0.001 0.999 45 H -0.037 1.037 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.238 0.394 22.453 24.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.081 4.081 4 C -0.130 4.130 5 C -0.101 4.101 6 C -0.178 4.178 7 C -0.106 4.106 8 C -0.237 4.237 9 C 0.063 3.937 10 O -0.235 6.235 11 C -0.037 4.037 12 C 0.065 3.935 13 H 0.082 0.918 14 O -0.361 6.361 15 C -0.097 4.097 16 N -0.267 5.267 17 C -0.109 4.109 18 C 0.081 3.919 19 C -0.560 4.560 20 H 0.080 0.920 21 C -0.198 4.198 22 N -0.576 5.576 23 Si 0.793 3.207 24 H -0.187 1.187 25 H -0.206 1.206 26 H -0.201 1.201 27 H 0.123 0.877 28 H 0.129 0.871 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.165 0.835 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.156 0.844 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.230 0.770 39 H 0.054 0.946 40 H 0.124 0.876 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.034 0.966 44 H 0.019 0.981 45 H -0.020 1.020 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.917 0.598 21.544 23.724 hybrid contribution 1.377 0.172 -0.540 1.489 sum -8.540 0.770 21.004 22.687 Atomic orbital electron populations 1.23981 0.95127 1.02857 1.00560 1.22797 0.96312 0.97722 1.00405 1.19542 0.96543 0.96391 0.95659 1.19373 0.92957 1.03042 0.97589 1.21158 1.00474 0.97304 0.91135 1.21388 0.94190 1.02340 0.99834 1.21291 0.96947 0.95427 0.96910 1.21496 1.00878 1.06994 0.94337 1.19235 0.94339 0.94551 0.85556 1.86143 1.34023 1.70409 1.32971 1.23536 0.82890 0.98650 0.98582 1.21657 0.89067 0.88452 0.94300 0.91766 1.86679 1.59788 1.31340 1.58259 1.22650 0.95073 0.99521 0.92496 1.61874 1.39946 1.20690 1.04206 1.22256 0.90172 0.96283 1.02167 1.19404 0.92662 0.89230 0.90574 1.21505 1.48890 0.94141 0.91444 0.92008 1.25926 0.94893 0.95246 1.03785 1.70088 1.51384 1.04985 1.31145 0.85340 0.77740 0.78895 0.78689 1.18710 1.20593 1.20129 0.87650 0.87117 0.89017 0.89053 0.92061 0.83540 0.83293 0.83378 0.84393 0.88988 0.90509 0.77036 0.94598 0.87601 0.89807 0.92631 0.96615 0.98105 1.01988 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.61 14.32 67.78 0.97 -2.64 16 2 C -0.15 -3.68 9.50 25.65 0.24 -3.44 16 3 C -0.04 -1.07 5.51 29.10 0.16 -0.91 16 4 C -0.13 -3.12 5.13 -19.77 -0.10 -3.22 16 5 C -0.08 -1.55 9.68 22.25 0.22 -1.34 16 6 C -0.16 -2.58 10.04 22.28 0.22 -2.36 16 7 C -0.09 -1.50 10.04 22.26 0.22 -1.28 16 8 C -0.22 -4.64 9.04 22.37 0.20 -4.44 16 9 C 0.11 2.85 6.66 22.51 0.15 3.00 16 10 O -0.32 -9.76 9.24 -87.77 -0.81 -10.57 16 11 C 0.04 1.01 4.37 71.98 0.31 1.32 16 12 C 0.13 4.21 3.31 30.59 0.10 4.32 16 13 H 0.06 2.77 6.78 -2.39 -0.02 2.75 16 14 O -0.55 -19.27 13.18 -144.33 -1.90 -21.17 16 15 C 0.03 1.03 4.66 86.30 0.40 1.43 16 16 N -0.54 -23.28 4.56 -927.00 -4.22 -27.51 16 17 C 0.04 1.45 9.37 127.69 1.20 2.65 16 18 C 0.21 11.30 4.55 85.56 0.39 11.69 16 19 C -0.52 -30.45 8.39 25.60 0.21 -30.24 16 20 H 0.06 3.56 7.16 -2.91 -0.02 3.54 16 21 C 0.00 -0.05 5.46 84.66 0.46 0.42 16 22 N -0.94 -57.68 13.29 21.45 0.28 -57.39 16 23 Si 0.97 45.54 29.54 68.60 2.03 47.57 16 24 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H 0.11 1.79 8.06 -2.91 -0.02 1.76 16 28 H 0.11 1.72 7.84 -2.91 -0.02 1.70 16 29 H 0.09 2.48 8.06 -2.91 -0.02 2.46 16 30 H 0.09 1.76 7.70 -2.39 -0.02 1.74 16 31 H 0.06 1.79 7.69 -2.39 -0.02 1.77 16 32 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.14 2.47 6.30 -2.91 -0.02 2.45 16 36 H 0.09 1.78 7.65 -2.39 -0.02 1.77 16 37 H 0.08 1.81 7.67 -2.39 -0.02 1.79 16 38 H 0.38 9.34 9.05 -74.06 -0.67 8.67 16 39 H 0.04 1.19 8.00 -2.39 -0.02 1.17 16 40 H 0.11 2.58 7.94 -2.39 -0.02 2.56 16 41 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.05 2.30 6.66 -2.39 -0.02 2.28 16 43 H 0.02 0.55 8.13 -2.39 -0.02 0.53 16 44 H 0.00 0.05 6.63 -2.39 -0.02 0.04 16 45 H -0.04 -2.19 8.12 -2.39 -0.02 -2.21 16 46 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -73.48 381.21 1.03 -72.46 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.28 Total: 21.66 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 5.37 Total: -25.03 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -3.94 Total: -84.90 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -2.71 Total: -31.74 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -73.48 1.03 -72.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435533599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.903 kcal (2) G-P(sol) polarization free energy of solvation -73.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds