Wall clock time and date at job start Tue Mar 31 2020 08:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47202 * 2 1 4 4 C 1.46502 * 120.00160 * 85.86146 * 3 2 1 5 5 C 1.50697 * 109.47059 * 89.99808 * 4 3 2 6 6 H 1.07998 * 120.00491 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00074 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99850 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00148 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46854 * 60.00502 * 9 7 5 11 11 H 1.48505 * 109.46951 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47276 * 299.99996 * 9 7 5 13 13 C 1.34781 * 120.00066 * 265.85706 * 3 2 1 14 14 O 1.21579 * 120.00366 * 184.60394 * 13 3 2 15 15 C 1.47601 * 119.99802 * 4.60956 * 13 3 2 16 16 C 1.39765 * 120.08772 * 300.70817 * 15 13 3 17 17 C 1.37682 * 119.90946 * 179.79219 * 16 15 13 18 18 C 1.50699 * 119.95195 * 180.22916 * 17 16 15 19 19 C 1.53003 * 109.47334 * 300.25428 * 18 17 16 20 20 C 1.53005 * 109.47043 * 60.25634 * 18 17 16 21 21 C 1.39011 * 120.08822 * 0.48639 * 17 16 15 22 22 O 1.35714 * 119.91271 * 179.76699 * 21 17 16 23 23 C 1.38979 * 120.18147 * 359.74350 * 21 17 16 24 24 C 1.37725 * 120.08196 * 0.02562 * 23 21 17 25 25 C 1.50697 * 120.04251 * 180.02562 * 24 23 21 26 26 H 1.09007 * 109.46974 * 60.00030 * 1 2 3 27 27 H 1.08994 * 109.46986 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47158 * 300.00692 * 1 2 3 29 29 H 1.09006 * 109.47297 * 239.99721 * 2 1 3 30 30 H 1.09003 * 109.47438 * 119.99788 * 2 1 3 31 31 H 1.08994 * 109.47241 * 209.99646 * 4 3 2 32 32 H 1.09001 * 109.46904 * 330.00111 * 4 3 2 33 33 H 0.96998 * 119.99894 * 180.02562 * 8 7 5 34 34 H 1.08005 * 120.03904 * 0.02562 * 16 15 13 35 35 H 1.08999 * 109.46808 * 180.25131 * 18 17 16 36 36 H 1.08995 * 109.46894 * 180.02562 * 19 18 17 37 37 H 1.08997 * 109.47006 * 300.00354 * 19 18 17 38 38 H 1.08997 * 109.46694 * 59.99974 * 19 18 17 39 39 H 1.08996 * 109.47188 * 60.00089 * 20 18 17 40 40 H 1.08999 * 109.46553 * 179.97438 * 20 18 17 41 41 H 1.08999 * 109.46908 * 299.99436 * 20 18 17 42 42 H 0.96692 * 113.99982 * 269.98359 * 22 21 17 43 43 H 1.07997 * 119.96134 * 180.02562 * 23 21 17 44 44 H 1.09007 * 109.47142 * 264.78040 * 25 24 23 45 45 H 1.09000 * 109.47085 * 24.77927 * 25 24 23 46 46 H 1.08997 * 109.47305 * 144.78201 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1762 2.1024 1.2654 5 6 3.5663 1.8772 1.8018 6 1 4.2628 1.2592 1.2548 7 6 3.9495 2.4611 2.9906 8 7 3.1016 3.2142 3.6567 9 14 5.6725 2.1815 3.6560 10 1 6.6690 2.6795 2.6741 11 1 5.8329 2.9136 4.9380 12 1 5.8853 0.7297 3.8844 13 6 2.3225 1.9885 -1.1642 14 8 2.8063 3.1038 -1.1598 15 6 2.0680 1.2994 -2.4444 16 6 2.6780 0.0708 -2.7123 17 6 2.4347 -0.5707 -3.9059 18 6 3.0879 -1.8980 -4.1936 19 6 4.6089 -1.7362 -4.1580 20 6 2.6586 -2.9175 -3.1365 21 6 1.5915 0.0067 -4.8483 22 8 1.3578 -0.6266 -6.0256 23 6 0.9866 1.2305 -4.5878 24 6 1.2212 1.8764 -3.3942 25 6 0.5645 3.2031 -3.1125 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0194 3.1680 1.0983 32 1 1.4449 1.7361 1.9860 33 1 3.3713 3.6253 4.4928 34 1 3.3365 -0.3764 -1.9823 35 1 2.7826 -2.2470 -5.1800 36 1 5.0813 -2.6961 -4.3665 37 1 4.9148 -1.0099 -4.9110 38 1 4.9142 -1.3872 -3.1716 39 1 1.5750 -3.0328 -3.1619 40 1 3.1307 -3.8775 -3.3449 41 1 2.9639 -2.5685 -2.1501 42 1 1.9795 -0.3926 -6.7282 43 1 0.3318 1.6757 -5.3222 44 1 1.2465 4.0103 -3.3800 45 1 -0.3487 3.2889 -3.7015 46 1 0.3206 3.2700 -2.0522 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436856190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:34 Heat of formation + Delta-G solvation = -91.272874 kcal Electronic energy + Delta-G solvation = -26169.135319 eV Core-core repulsion = 22636.483851 eV Total energy + Delta-G solvation = -3532.651468 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -41.72982 -40.22814 -37.64616 -37.13502 -36.53762 -34.91405 -32.52358 -31.74716 -31.27487 -29.03774 -27.96039 -27.76843 -25.46919 -24.85293 -23.66889 -23.11649 -21.38144 -19.85867 -18.96715 -18.67399 -18.12760 -17.42463 -17.25459 -16.46662 -16.35208 -15.68356 -15.41951 -15.05972 -14.87603 -14.77144 -14.56351 -14.51074 -14.22931 -14.10674 -13.70209 -13.68293 -13.37158 -13.23098 -13.15824 -13.06941 -12.81558 -12.66441 -12.59559 -12.45797 -12.38830 -12.19224 -11.97254 -11.86674 -11.76019 -11.63260 -11.22408 -10.72473 -10.65118 -9.79055 -9.52977 -9.37098 -8.23573 -6.38389 -0.05911 0.26703 1.35116 1.39694 1.46920 1.73866 2.22949 2.39343 2.56540 3.05857 3.22167 3.54482 3.63174 3.78811 3.97169 4.08363 4.17270 4.33231 4.34530 4.41594 4.47674 4.52243 4.54740 4.65830 4.73018 4.83051 4.86359 4.90304 4.91302 4.97544 4.99809 5.02668 5.05142 5.14378 5.16379 5.28215 5.30587 5.32744 5.41188 5.48586 5.54499 5.58658 5.74595 5.81568 6.03972 6.65244 6.72160 6.85390 7.23659 7.39466 8.83568 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.004490 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.435597 B = 6235.129659 C = 6955.601910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 N -0.593 5.593 4 C 0.264 3.736 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.279 1.279 11 H -0.277 1.277 12 H -0.259 1.259 13 C 0.546 3.454 14 O -0.587 6.587 15 C -0.140 4.140 16 C -0.071 4.071 17 C -0.107 4.107 18 C -0.048 4.048 19 C -0.146 4.146 20 C -0.145 4.145 21 C 0.134 3.866 22 O -0.493 6.493 23 C -0.141 4.141 24 C -0.042 4.042 25 C -0.112 4.112 26 H 0.050 0.950 27 H 0.093 0.907 28 H 0.043 0.957 29 H 0.097 0.903 30 H 0.075 0.925 31 H -0.003 1.003 32 H 0.025 0.975 33 H 0.268 0.732 34 H 0.126 0.874 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.042 0.958 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.412 0.588 43 H 0.158 0.842 44 H 0.069 0.931 45 H 0.099 0.901 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 -13.151 -19.773 24.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.030 4.030 3 N -0.323 5.323 4 C 0.143 3.857 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.204 1.204 11 H -0.201 1.201 12 H -0.184 1.184 13 C 0.335 3.665 14 O -0.469 6.469 15 C -0.143 4.143 16 C -0.090 4.090 17 C -0.108 4.108 18 C -0.067 4.067 19 C -0.203 4.203 20 C -0.203 4.203 21 C 0.089 3.911 22 O -0.307 6.307 23 C -0.159 4.159 24 C -0.043 4.043 25 C -0.168 4.168 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.062 0.938 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.015 0.985 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.144 0.856 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.272 0.728 43 H 0.176 0.824 44 H 0.088 0.912 45 H 0.118 0.882 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.384 -12.746 -19.266 23.513 hybrid contribution 1.220 0.839 0.858 1.711 sum -3.164 -11.907 -18.408 22.151 Atomic orbital electron populations 1.22076 0.94725 1.03325 1.01364 1.21926 0.95541 0.81709 1.03782 1.48226 1.62751 1.14958 1.06356 1.18738 0.95952 0.90969 0.80033 1.21627 0.98996 1.31094 1.06436 0.93047 1.25839 1.01873 0.94365 0.96840 1.70042 1.37228 1.32921 1.16509 0.85484 0.78954 0.79064 0.77418 1.20430 1.20149 1.18376 1.18807 0.77630 0.85313 0.84726 1.90723 1.45920 1.22180 1.88055 1.19796 1.02904 0.97066 0.94507 1.20871 0.98445 0.92364 0.97278 1.20210 0.98298 0.98432 0.93835 1.20060 0.94932 0.90266 1.01397 1.21896 0.94245 1.02588 1.01610 1.21872 1.01592 0.98759 0.98044 1.18340 0.94604 0.90376 0.87751 1.84692 1.58414 1.67634 1.19949 1.21342 1.02735 0.94737 0.97112 1.19806 0.95260 0.96371 0.92829 1.20791 1.01076 0.93510 1.01448 0.93084 0.88791 0.93769 0.88473 0.90663 0.98485 0.95729 0.92341 0.85580 0.88219 0.90576 0.92511 0.93882 0.92557 0.90709 0.93261 0.72815 0.82429 0.91202 0.88188 0.94216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.59 10.24 71.98 0.74 -3.86 16 2 C 0.09 3.20 5.94 86.38 0.51 3.71 16 3 N -0.59 -27.02 2.46 -829.85 -2.04 -29.06 16 4 C 0.26 14.79 5.15 85.63 0.44 15.23 16 5 C -0.54 -32.16 9.39 25.60 0.24 -31.92 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.58 5.46 84.65 0.46 1.05 16 8 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 9 Si 0.97 45.61 29.54 68.60 2.03 47.63 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 13 C 0.55 24.95 5.95 86.71 0.52 25.47 16 14 O -0.59 -32.50 16.12 -3.97 -0.06 -32.56 16 15 C -0.14 -4.83 4.98 -20.08 -0.10 -4.93 16 16 C -0.07 -2.03 6.24 22.51 0.14 -1.89 16 17 C -0.11 -2.37 4.79 -19.81 -0.09 -2.47 16 18 C -0.05 -0.82 3.05 -11.54 -0.04 -0.85 16 19 C -0.15 -2.42 9.00 71.98 0.65 -1.77 16 20 C -0.15 -2.40 9.01 71.98 0.65 -1.75 16 21 C 0.13 2.73 6.68 22.63 0.15 2.88 16 22 O -0.49 -7.23 12.24 -90.35 -1.11 -8.34 16 23 C -0.14 -3.12 9.60 22.33 0.21 -2.91 16 24 C -0.04 -1.23 5.91 -19.63 -0.12 -1.34 16 25 C -0.11 -3.26 9.13 71.24 0.65 -2.61 16 26 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 29 H 0.10 2.90 4.20 -2.38 -0.01 2.89 16 30 H 0.07 2.66 8.10 -2.39 -0.02 2.64 16 31 H 0.00 -0.19 7.49 -2.39 -0.02 -0.21 16 32 H 0.02 1.40 8.07 -2.39 -0.02 1.38 16 33 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.13 3.69 6.29 -2.91 -0.02 3.67 16 35 H 0.10 1.41 6.98 -2.39 -0.02 1.39 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.04 0.86 7.37 -2.39 -0.02 0.84 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.05 0.91 7.40 -2.39 -0.02 0.89 16 42 H 0.41 2.18 9.06 -74.06 -0.67 1.51 16 43 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 44 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 45 H 0.10 2.11 8.05 -2.39 -0.02 2.09 16 46 H 0.04 1.39 7.25 -2.39 -0.02 1.37 16 Total: -1.00 -76.88 375.05 4.42 -72.46 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.30 Total: 14.45 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 5.02 Total: -7.97 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -1.75 Total: -85.68 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -1.17 Total: -40.90 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -76.88 4.42 -72.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436856190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.810 kcal (2) G-P(sol) polarization free energy of solvation -76.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.36 seconds