Wall clock time and date at job start Tue Mar 31 2020 08:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47176 * 2 1 4 4 C 1.46892 * 111.00117 * 299.46429 * 3 2 1 5 5 C 1.50705 * 109.47163 * 293.97081 * 4 3 2 6 6 H 1.08001 * 119.99600 * 355.07766 * 5 4 3 7 7 C 1.37874 * 120.00161 * 175.07694 * 5 4 3 8 8 N 1.31516 * 119.99729 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00011 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47490 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47158 * 120.00119 * 9 7 5 12 12 H 1.48501 * 109.47222 * 239.99930 * 9 7 5 13 13 C 1.46900 * 110.99971 * 63.41932 * 3 2 1 14 14 C 1.50704 * 109.47492 * 66.04337 * 13 3 2 15 15 C 1.38250 * 119.96352 * 270.02729 * 14 13 3 16 16 C 1.38296 * 120.40015 * 179.76056 * 15 14 13 17 17 C 1.38388 * 119.92228 * 0.03730 * 16 15 14 18 18 C 1.39689 * 119.46704 * 0.32384 * 17 16 15 19 19 C 1.37938 * 120.42143 * 359.48167 * 18 17 16 20 20 O 1.35814 * 117.34617 * 179.24219 * 18 17 16 21 21 C 1.40160 * 120.20506 * 83.24610 * 20 18 17 22 22 C 1.51553 * 116.61829 * 281.13469 * 21 20 18 23 23 C 1.53626 * 110.57746 * 71.73055 * 22 21 20 24 24 C 1.54636 * 108.16653 * 255.69508 * 23 22 21 25 25 O 1.35596 * 121.22912 * 181.15888 * 17 16 15 26 26 H 1.08999 * 109.47485 * 301.29606 * 1 2 3 27 27 H 1.08999 * 109.46881 * 61.29444 * 1 2 3 28 28 H 1.09005 * 109.47130 * 181.29247 * 1 2 3 29 29 H 1.09001 * 109.47190 * 239.99654 * 2 1 3 30 30 H 1.08998 * 109.46776 * 119.99987 * 2 1 3 31 31 H 1.08997 * 109.47544 * 53.97252 * 4 3 2 32 32 H 1.09004 * 109.46946 * 173.97316 * 4 3 2 33 33 H 0.97001 * 119.99398 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.46777 * 306.04438 * 13 3 2 35 35 H 1.08999 * 109.47451 * 186.04599 * 13 3 2 36 36 H 1.08001 * 119.79726 * 359.77761 * 15 14 13 37 37 H 1.08002 * 120.03877 * 179.97438 * 16 15 14 38 38 H 1.07994 * 120.14458 * 180.37132 * 19 18 17 39 39 H 1.08999 * 108.02088 * 159.33910 * 21 20 18 40 40 H 1.08991 * 108.02200 * 42.93328 * 21 20 18 41 41 H 1.08997 * 109.25304 * 192.00762 * 22 21 20 42 42 H 1.08998 * 109.26005 * 311.44542 * 22 21 20 43 43 H 1.09004 * 109.71878 * 15.36285 * 23 22 21 44 44 H 1.08997 * 109.72588 * 136.02111 * 23 22 21 45 45 H 1.09001 * 109.63404 * 297.72706 * 24 23 22 46 46 H 1.08999 * 109.63795 * 177.11365 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5592 2.1062 -1.1940 5 6 2.1919 1.5018 -2.4211 6 1 2.9285 0.7187 -2.3187 7 6 1.8303 1.9487 -3.6743 8 7 0.9329 2.9020 -3.7988 9 14 2.6140 1.1991 -5.1952 10 1 3.5852 0.1525 -4.7870 11 1 1.5600 0.5918 -6.0469 12 1 3.3203 2.2575 -5.9608 13 6 1.6166 2.0859 1.2265 14 6 2.3067 1.4615 2.4119 15 6 1.7070 0.4152 3.0878 16 6 2.3345 -0.1676 4.1737 17 6 3.5699 0.2979 4.5888 18 6 4.1684 1.3603 3.9073 19 6 3.5408 1.9361 2.8223 20 8 5.3733 1.7928 4.3609 21 6 6.5498 1.1389 3.9702 22 6 6.8760 -0.1569 4.6852 23 6 5.9172 -1.2732 4.2440 24 6 4.8900 -1.5023 5.3770 25 8 4.2193 -0.2690 5.6354 26 1 -0.3634 0.5338 0.8781 27 1 -0.3633 0.4936 -0.9014 28 1 -0.3634 -1.0274 0.0232 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 0.4745 2.0293 -1.2692 32 1 1.8446 3.1553 -1.1173 33 1 0.6788 3.2166 -4.6805 34 1 0.5367 2.0070 1.3518 35 1 1.8981 3.1363 1.1539 36 1 0.7428 0.0506 2.7657 37 1 1.8606 -0.9844 4.6977 38 1 4.0103 2.7534 2.2950 39 1 7.3829 1.8257 4.1201 40 1 6.4795 0.9270 2.9034 41 1 7.8997 -0.4489 4.4508 42 1 6.7828 -0.0073 5.7608 43 1 5.3992 -0.9742 3.3327 44 1 6.4781 -2.1904 4.0649 45 1 5.4063 -1.8343 6.2778 46 1 4.1654 -2.2555 5.0677 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449011652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:35 Heat of formation + Delta-G solvation = -43.937920 kcal Electronic energy + Delta-G solvation = -25879.879630 eV Core-core repulsion = 22349.280760 eV Total energy + Delta-G solvation = -3530.598871 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.82830 -38.42994 -37.88864 -36.50239 -34.05011 -32.62222 -31.13205 -30.04451 -29.31933 -28.60139 -26.93802 -24.89536 -24.09014 -23.11844 -22.14377 -21.94050 -20.66333 -19.33817 -17.88037 -17.15019 -16.78791 -16.25974 -16.13655 -15.44400 -15.03187 -15.01080 -14.72066 -14.24940 -14.13978 -14.03854 -13.91264 -13.24190 -12.90933 -12.81610 -12.30003 -12.15838 -11.95179 -11.87040 -11.53891 -11.43306 -11.35755 -11.24568 -11.08927 -10.85551 -10.81111 -10.66393 -10.52179 -10.31187 -10.06844 -9.79360 -9.50831 -9.21849 -8.68993 -8.45885 -8.24873 -7.19836 -6.04105 -4.04952 1.17579 1.35640 3.29268 3.33573 3.37237 3.41915 3.54322 4.04402 4.42084 4.52070 4.54709 4.78084 4.90470 5.02299 5.10202 5.15024 5.20579 5.20648 5.31478 5.33362 5.40669 5.47151 5.58606 5.61997 5.67743 5.73258 5.80431 5.85427 5.94132 6.01602 6.05397 6.15200 6.17192 6.34502 6.40373 6.46027 6.68522 6.71513 6.81091 6.91460 7.28999 7.30410 7.41854 7.79588 7.85332 8.07538 8.17828 8.53221 9.03430 9.59307 11.06572 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.018863 B = 0.003554 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.013597 B = 7875.467857 C = 8390.859335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 N -0.528 5.528 4 C 0.187 3.813 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.083 3.917 14 C -0.046 4.046 15 C -0.107 4.107 16 C -0.134 4.134 17 C 0.063 3.937 18 C 0.083 3.917 19 C -0.100 4.100 20 O -0.324 6.324 21 C 0.073 3.927 22 C -0.151 4.151 23 C -0.164 4.164 24 C 0.062 3.938 25 O -0.321 6.321 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.005 0.995 32 H 0.025 0.975 33 H 0.260 0.740 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.135 0.865 39 H 0.093 0.907 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.763 -7.809 17.638 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.070 4.070 3 N -0.252 5.252 4 C 0.063 3.937 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.210 1.210 13 C -0.044 4.044 14 C -0.047 4.047 15 C -0.126 4.126 16 C -0.153 4.153 17 C 0.018 3.982 18 C 0.039 3.961 19 C -0.119 4.119 20 O -0.241 6.241 21 C -0.003 4.003 22 C -0.189 4.189 23 C -0.202 4.202 24 C -0.012 4.012 25 O -0.238 6.238 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.022 0.978 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.153 0.847 39 H 0.111 0.889 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.119 0.881 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.251 -7.492 17.758 20.593 hybrid contribution -0.514 -0.699 -1.228 1.504 sum 6.737 -8.191 16.530 19.640 Atomic orbital electron populations 1.22405 0.99430 1.00856 1.02157 1.22010 0.92082 0.91524 1.01418 1.62400 1.59305 1.01969 1.01505 1.19821 0.94619 0.93615 0.85685 1.21169 1.22839 1.20290 0.89891 0.91920 1.24970 0.95260 0.95260 0.99085 1.69967 1.31992 1.28456 1.23441 0.86483 0.79147 0.79128 0.82915 1.19710 1.21151 1.21048 1.21096 0.96571 0.98116 0.88656 1.19920 0.93945 0.95075 0.95787 1.21009 1.00403 0.96215 0.94935 1.21202 0.95133 1.01373 0.97544 1.19015 0.92612 0.95337 0.91196 1.18902 0.86826 0.96672 0.93700 1.20943 0.95564 1.01235 0.94109 1.85180 1.11617 1.55379 1.71889 1.21900 0.85821 0.94656 0.97876 1.22031 0.99344 0.95082 1.02419 1.22767 0.98261 0.99781 0.99398 1.23275 0.93801 0.85101 0.99058 1.86058 1.67874 1.38004 1.31872 0.93685 0.91100 0.93481 0.90203 0.92773 0.97768 0.95658 0.93016 0.94068 0.90365 0.85561 0.85654 0.84708 0.88901 0.93532 0.90369 0.90386 0.91031 0.90371 0.88120 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.29 9.16 37.16 0.34 -2.95 16 2 C 0.06 1.09 5.51 -3.83 -0.02 1.07 16 3 N -0.53 -10.90 4.69 -237.52 -1.11 -12.02 16 4 C 0.19 4.69 4.49 -4.98 -0.02 4.66 16 5 C -0.50 -13.76 8.41 -34.44 -0.29 -14.05 16 6 H 0.06 1.72 7.30 -52.49 -0.38 1.34 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 9 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.08 1.45 4.93 -4.97 -0.02 1.43 16 14 C -0.05 -0.72 4.90 -104.54 -0.51 -1.23 16 15 C -0.11 -1.48 7.89 -39.56 -0.31 -1.79 16 16 C -0.13 -1.75 9.97 -39.50 -0.39 -2.15 16 17 C 0.06 0.89 4.74 -38.98 -0.18 0.70 16 18 C 0.08 1.24 5.36 -39.15 -0.21 1.03 16 19 C -0.10 -1.54 9.69 -39.61 -0.38 -1.92 16 20 O -0.32 -4.72 9.67 -34.87 -0.34 -5.06 16 21 C 0.07 0.82 5.93 36.43 0.22 1.04 16 22 C -0.15 -1.41 5.66 -27.14 -0.15 -1.56 16 23 C -0.16 -1.58 5.68 -25.55 -0.14 -1.73 16 24 C 0.06 0.60 6.42 38.02 0.24 0.85 16 25 O -0.32 -4.27 9.36 -36.10 -0.34 -4.61 16 26 H 0.04 0.71 5.71 -51.93 -0.30 0.41 16 27 H 0.07 1.44 6.36 -51.93 -0.33 1.11 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.65 6.94 -51.93 -0.36 1.29 16 30 H 0.05 0.91 5.92 -51.93 -0.31 0.60 16 31 H 0.00 0.12 6.04 -51.93 -0.31 -0.19 16 32 H 0.03 0.68 7.93 -51.93 -0.41 0.27 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.04 0.70 6.03 -51.93 -0.31 0.38 16 35 H 0.08 1.37 7.87 -51.93 -0.41 0.96 16 36 H 0.13 1.61 7.31 -52.49 -0.38 1.22 16 37 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.55 7.81 -51.93 -0.41 0.14 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.76 7.50 -51.93 -0.39 0.37 16 43 H 0.07 0.85 6.57 -51.93 -0.34 0.51 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 354.61 15.07 5.34 5.34 Total: -1.00 -30.20 354.61 -9.84 -40.04 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.16 Total: 0.58 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -1.95 Total: -15.16 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: -0.38 Total: -37.50 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.68 Total: -9.66 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.20 -9.84 -40.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449011652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.894 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds