Wall clock time and date at job start Tue Mar 31 2020 10:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47102 * 2 1 4 4 C 1.42903 * 113.99779 * 184.94575 * 3 2 1 5 5 H 1.08998 * 109.47123 * 333.58828 * 4 3 2 6 6 C 1.53006 * 109.46924 * 213.58921 * 4 3 2 7 7 C 1.50697 * 109.46912 * 64.99751 * 6 4 3 8 8 O 1.21291 * 120.00089 * 0.02562 * 7 6 4 9 9 N 1.34771 * 120.00022 * 179.97438 * 7 6 4 10 10 C 1.39936 * 120.00146 * 184.55794 * 9 7 6 11 11 C 1.39297 * 119.95111 * 144.43629 * 10 9 7 12 12 C 1.38479 * 120.43023 * 180.02562 * 11 10 9 13 13 C 1.37679 * 120.32487 * 359.97438 * 12 11 10 14 14 C 1.40735 * 119.88605 * 0.02562 * 13 12 11 15 15 C 1.41410 * 120.21380 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00208 * 150.54417 * 15 14 13 17 17 C 1.39926 * 119.99947 * 330.54307 * 15 14 13 18 18 N 1.30837 * 119.99827 * 349.36444 * 17 15 14 19 19 Si 1.86798 * 120.00146 * 169.36273 * 17 15 14 20 20 H 1.48504 * 109.46989 * 90.00426 * 19 17 15 21 21 H 1.48503 * 109.47063 * 209.99838 * 19 17 15 22 22 H 1.48493 * 109.47049 * 330.00149 * 19 17 15 23 23 C 1.38241 * 119.94631 * 324.16119 * 10 9 7 24 24 C 1.53004 * 109.47083 * 93.59191 * 4 3 2 25 25 C 1.52999 * 109.47218 * 63.40718 * 24 4 3 26 26 C 1.53002 * 109.46774 * 183.40249 * 24 4 3 27 27 H 1.09002 * 109.47009 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47564 * 300.00356 * 1 2 3 29 29 H 1.09002 * 109.47360 * 60.00420 * 1 2 3 30 30 H 1.08999 * 109.47564 * 239.99644 * 2 1 3 31 31 H 1.09002 * 109.47360 * 119.99580 * 2 1 3 32 32 H 1.09001 * 109.47125 * 304.99983 * 6 4 3 33 33 H 1.08996 * 109.46976 * 184.99772 * 6 4 3 34 34 H 0.97001 * 119.99838 * 4.83112 * 9 7 6 35 35 H 1.08002 * 119.78397 * 0.02562 * 11 10 9 36 36 H 1.08003 * 119.84014 * 180.02562 * 12 11 10 37 37 H 1.08006 * 120.05967 * 179.97438 * 13 12 11 38 38 H 0.96998 * 119.99905 * 179.97438 * 18 17 15 39 39 H 1.07994 * 120.16421 * 359.97438 * 23 10 9 40 40 H 1.08993 * 109.47180 * 303.40484 * 24 4 3 41 41 H 1.09003 * 109.47329 * 59.99877 * 25 24 4 42 42 H 1.09004 * 109.47084 * 179.97438 * 25 24 4 43 43 H 1.09007 * 109.47000 * 299.99541 * 25 24 4 44 44 H 1.09000 * 109.46818 * 63.89782 * 26 24 4 45 45 H 1.09001 * 109.46840 * 183.88867 * 26 24 4 46 46 H 1.08997 * 109.47811 * 303.89231 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4263 1.4617 -0.1126 5 1 3.8958 0.5606 0.2820 6 6 3.9048 2.6769 0.6845 7 6 3.6377 2.4529 2.1506 8 8 3.1164 1.4224 2.5216 9 7 3.9790 3.3970 3.0497 10 6 3.8192 3.1506 4.4179 11 6 4.7421 3.6598 5.3287 12 6 4.5938 3.4216 6.6848 13 6 3.5313 2.6786 7.1480 14 6 2.5909 2.1577 6.2397 15 6 1.4972 1.3932 6.7079 16 1 0.5658 1.3922 6.1614 17 6 1.6219 0.6380 7.8792 18 7 2.7982 0.4696 8.4268 19 14 0.1091 -0.1298 8.6610 20 1 -0.1006 -1.4897 8.1023 21 1 0.3045 -0.2231 10.1301 22 1 -1.0790 0.7128 8.3721 23 6 2.7426 2.4071 4.8641 24 6 3.8090 1.6340 -1.5839 25 6 3.2200 2.9426 -2.1143 26 6 5.3331 1.6713 -1.7133 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.3692 3.5652 0.3493 33 1 4.9742 2.8165 0.5272 34 1 4.3317 4.2489 2.7483 35 1 5.5786 4.2441 4.9749 36 1 5.3148 3.8213 7.3826 37 1 3.4201 2.4951 8.2065 38 1 2.8846 -0.0536 9.2390 39 1 2.0238 2.0160 4.1593 40 1 3.4157 0.7978 -2.1619 41 1 3.6134 3.7788 -1.5362 42 1 3.4930 3.0655 -3.1624 43 1 2.1341 2.9160 -2.0221 44 1 5.7479 0.7132 -1.4002 45 1 5.6050 1.8630 -2.7513 46 1 5.7322 2.4642 -1.0808 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456753301.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:38 Heat of formation + Delta-G solvation = -99.824979 kcal Electronic energy + Delta-G solvation = -25364.365394 eV Core-core repulsion = 21831.343078 eV Total energy + Delta-G solvation = -3533.022316 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.35160 -39.77003 -38.67858 -36.28894 -36.12537 -34.77539 -32.30965 -31.73482 -31.26733 -29.39288 -27.97675 -27.24991 -25.55807 -23.74480 -23.24571 -22.67687 -21.30352 -20.29429 -19.48313 -18.35794 -17.79413 -17.38105 -16.87311 -16.49369 -16.44598 -16.26373 -15.88956 -15.05129 -14.85477 -14.83405 -14.68788 -14.31906 -14.05853 -13.94860 -13.77234 -13.50288 -13.14901 -13.09829 -12.99552 -12.84679 -12.65383 -12.56714 -12.39050 -12.22367 -12.08492 -11.97760 -11.87285 -11.68533 -11.57392 -11.39307 -11.19959 -10.82589 -10.48784 -10.30827 -9.34566 -8.71101 -8.58186 -6.39055 0.90063 1.01167 1.34108 1.45698 1.49607 1.86152 2.20127 2.30523 2.75247 2.77988 3.64579 3.73141 3.78709 4.01443 4.13231 4.21633 4.31067 4.36374 4.43100 4.47816 4.49782 4.53319 4.64010 4.67240 4.86307 4.89163 4.93093 5.05449 5.06645 5.08225 5.12257 5.13633 5.14724 5.22315 5.26163 5.26858 5.34430 5.48883 5.51458 5.78992 5.88539 6.07377 6.12844 6.36163 6.37179 6.68913 6.72366 6.94661 7.01594 7.43327 8.37688 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.003847 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.228317 B = 7276.224835 C = 8716.351968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 O -0.390 6.390 4 C 0.106 3.894 5 H 0.046 0.954 6 C -0.129 4.129 7 C 0.496 3.504 8 O -0.560 6.560 9 N -0.662 5.662 10 C 0.153 3.847 11 C -0.244 4.244 12 C -0.095 4.095 13 C -0.192 4.192 14 C 0.086 3.914 15 C -0.504 4.504 16 H 0.062 0.938 17 C 0.033 3.967 18 N -0.834 5.834 19 Si 0.983 3.017 20 H -0.266 1.266 21 H -0.259 1.259 22 H -0.260 1.260 23 C -0.232 4.232 24 C -0.107 4.107 25 C -0.142 4.142 26 C -0.149 4.149 27 H 0.085 0.915 28 H 0.039 0.961 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.023 0.977 32 H 0.123 0.877 33 H 0.140 0.860 34 H 0.421 0.579 35 H 0.134 0.866 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.287 0.713 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.046 0.954 44 H 0.051 0.949 45 H 0.073 0.927 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.991 4.217 -18.920 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.015 4.015 3 O -0.310 6.310 4 C 0.047 3.953 5 H 0.065 0.935 6 C -0.168 4.168 7 C 0.286 3.714 8 O -0.437 6.437 9 N -0.308 5.308 10 C 0.060 3.940 11 C -0.265 4.265 12 C -0.114 4.114 13 C -0.212 4.212 14 C 0.084 3.916 15 C -0.535 4.535 16 H 0.080 0.920 17 C -0.180 4.180 18 N -0.461 5.461 19 Si 0.804 3.196 20 H -0.191 1.191 21 H -0.183 1.183 22 H -0.184 1.184 23 C -0.253 4.253 24 C -0.126 4.126 25 C -0.200 4.200 26 C -0.206 4.206 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.141 0.859 33 H 0.158 0.842 34 H 0.259 0.741 35 H 0.152 0.848 36 H 0.141 0.859 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.638 3.524 -18.516 19.196 hybrid contribution -0.456 -0.584 0.678 1.004 sum 3.183 2.939 -17.838 18.356 Atomic orbital electron populations 1.21708 0.93277 1.02976 1.02225 1.22440 0.96015 0.83710 0.99302 1.87841 1.21687 1.26850 1.94595 1.21919 0.81586 0.96807 0.94951 0.93535 1.22045 1.05668 1.01581 0.87544 1.21616 0.77238 0.82824 0.89768 1.90745 1.42152 1.29275 1.81512 1.43401 1.64807 1.18968 1.03638 1.17570 0.94282 0.98979 0.83165 1.20528 1.01691 1.11700 0.92599 1.20860 0.97208 0.97954 0.95355 1.21326 0.98481 1.02213 0.99207 1.17867 0.93045 0.89741 0.90989 1.19727 0.99148 1.26081 1.08515 0.91969 1.26703 1.00164 0.95232 0.95903 1.69857 1.25424 1.32427 1.18392 0.85199 0.77800 0.78638 0.77978 1.19115 1.18277 1.18400 1.21089 1.00249 1.09231 0.94764 1.21524 0.97379 0.99901 0.93815 1.21801 1.00651 0.96243 1.01256 1.21917 0.93207 1.02333 1.03181 0.89637 0.94207 0.90882 0.91936 0.95864 0.85870 0.84197 0.74073 0.84794 0.85856 0.87875 0.90278 0.89552 0.91108 0.91474 0.91498 0.93470 0.93016 0.90784 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 10.28 71.98 0.74 -2.91 16 2 C 0.06 1.76 6.45 71.98 0.46 2.22 16 3 O -0.39 -11.80 8.68 -135.20 -1.17 -12.98 16 4 C 0.11 2.61 1.45 30.60 0.04 2.66 16 5 H 0.05 1.34 7.59 -2.39 -0.02 1.32 16 6 C -0.13 -2.92 4.65 29.85 0.14 -2.78 16 7 C 0.50 17.68 7.55 87.66 0.66 18.34 16 8 O -0.56 -26.49 12.90 10.71 0.14 -26.35 16 9 N -0.66 -22.80 5.33 -303.65 -1.62 -24.41 16 10 C 0.15 7.02 6.28 38.10 0.24 7.26 16 11 C -0.24 -10.32 9.97 22.58 0.23 -10.10 16 12 C -0.10 -4.41 10.01 22.19 0.22 -4.19 16 13 C -0.19 -10.61 8.65 22.75 0.20 -10.42 16 14 C 0.09 5.11 5.54 -21.31 -0.12 4.99 16 15 C -0.50 -30.22 9.06 23.46 0.21 -30.01 16 16 H 0.06 3.71 7.87 -2.91 -0.02 3.68 16 17 C 0.03 1.81 5.25 85.25 0.45 2.26 16 18 N -0.83 -46.62 10.88 21.82 0.24 -46.38 16 19 Si 0.98 41.59 29.57 68.60 2.03 43.62 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 22 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 23 C -0.23 -12.90 8.43 22.85 0.19 -12.70 16 24 C -0.11 -1.83 2.94 -10.79 -0.03 -1.86 16 25 C -0.14 -2.13 8.64 71.98 0.62 -1.50 16 26 C -0.15 -1.93 9.02 71.98 0.65 -1.28 16 27 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 1.43 8.05 -2.39 -0.02 1.41 16 31 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.12 2.30 6.66 -2.39 -0.02 2.28 16 33 H 0.14 2.15 6.21 -2.39 -0.01 2.13 16 34 H 0.42 10.14 8.82 -92.71 -0.82 9.32 16 35 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 36 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 37 H 0.10 5.91 6.26 -2.91 -0.02 5.90 16 38 H 0.29 14.41 8.30 -92.71 -0.77 13.65 16 39 H 0.09 5.15 6.27 -2.91 -0.02 5.14 16 40 H 0.07 1.23 8.06 -2.39 -0.02 1.21 16 41 H 0.07 0.86 6.48 -2.39 -0.02 0.84 16 42 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.05 0.87 7.78 -2.38 -0.02 0.85 16 44 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.07 0.77 6.23 -2.39 -0.01 0.75 16 Total: -1.00 -75.75 370.56 4.67 -71.07 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: 0.16 Total: 35.45 kcal Atomic # 6 Polarization: -44.93 SS G_CDS: 4.91 Total: -40.02 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -1.38 Total: -70.79 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -1.04 Total: -39.33 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -75.75 4.67 -71.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456753301.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.751 kcal (2) G-P(sol) polarization free energy of solvation -75.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds