Wall clock time and date at job start Tue Mar 31 2020 09:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.42893 * 114.00274 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47214 * 29.99871 * 4 3 2 6 6 C 1.50703 * 109.47218 * 270.00111 * 4 3 2 7 7 O 1.21283 * 120.00093 * 354.99791 * 6 4 3 8 8 N 1.34777 * 120.00177 * 174.99818 * 6 4 3 9 9 C 1.46497 * 120.00108 * 180.02562 * 8 6 4 10 10 C 1.53003 * 109.47200 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.46892 * 299.99836 * 10 9 8 12 12 C 1.52996 * 109.47228 * 59.99512 * 10 9 8 13 13 C 1.50703 * 109.47269 * 179.97438 * 10 9 8 14 14 H 1.07999 * 119.99744 * 359.97438 * 13 10 9 15 15 C 1.37873 * 119.99681 * 179.97438 * 13 10 9 16 16 N 1.31516 * 120.00669 * 0.02562 * 15 13 10 17 17 Si 1.86808 * 119.99677 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.46805 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47142 * 120.00299 * 17 15 13 20 20 H 1.48500 * 109.47158 * 240.00164 * 17 15 13 21 21 C 1.50698 * 109.47425 * 150.00074 * 4 3 2 22 22 C 1.38231 * 119.99738 * 39.72469 * 21 4 3 23 23 C 1.38237 * 119.99851 * 179.79171 * 22 21 4 24 24 C 1.38236 * 120.00125 * 0.43713 * 23 22 21 25 25 C 1.38234 * 119.99681 * 359.82210 * 24 23 22 26 26 C 1.38237 * 119.99974 * 220.00262 * 21 4 3 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 31 31 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 32 32 H 0.97003 * 119.99660 * 0.02562 * 8 6 4 33 33 H 1.08997 * 109.47220 * 299.99978 * 9 8 6 34 34 H 1.08998 * 109.46962 * 60.00382 * 9 8 6 35 35 H 1.09005 * 109.47217 * 60.00254 * 11 10 9 36 36 H 1.09002 * 109.47262 * 179.97438 * 11 10 9 37 37 H 1.08998 * 109.47504 * 300.00078 * 11 10 9 38 38 H 1.08997 * 109.46897 * 60.00518 * 12 10 9 39 39 H 1.09007 * 109.47021 * 180.02562 * 12 10 9 40 40 H 1.08995 * 109.47454 * 299.99997 * 12 10 9 41 41 H 0.96992 * 120.00089 * 179.97438 * 16 15 13 42 42 H 1.08001 * 120.00182 * 0.02562 * 22 21 4 43 43 H 1.08005 * 120.00163 * 180.28128 * 23 22 21 44 44 H 1.07995 * 120.00333 * 179.82920 * 24 23 22 45 45 H 1.08004 * 119.99742 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.00423 * 359.97346 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8636 0.6015 -0.5130 6 6 3.9310 1.5000 1.4216 7 8 3.1415 1.5295 2.3418 8 7 5.2557 1.5030 1.6700 9 6 5.7419 1.5411 3.0514 10 6 7.2720 1.5370 3.0538 11 6 7.7796 0.2662 2.3694 12 6 7.7865 2.7636 2.2979 13 6 7.7722 1.5769 4.4749 14 1 7.0691 1.6031 5.2942 15 6 9.1273 1.5800 4.7288 16 7 9.9835 1.5486 3.7310 17 14 9.7473 1.6302 6.4902 18 1 8.5909 1.6609 7.4213 19 1 10.5681 0.4225 6.7607 20 1 10.5759 2.8464 6.6889 21 6 3.8348 2.7263 -0.7098 22 6 3.1032 3.8849 -0.5269 23 6 3.4763 5.0474 -1.1752 24 6 4.5755 5.0492 -2.0134 25 6 5.3039 3.8893 -2.2004 26 6 4.9334 2.7278 -1.5488 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 5.8872 1.4798 0.9339 33 1 5.3807 2.4466 3.5388 34 1 5.3750 0.6674 3.5899 35 1 7.4178 0.2377 1.3416 36 1 8.8696 0.2633 2.3708 37 1 7.4130 -0.6078 2.9079 38 1 7.4250 3.6689 2.7854 39 1 8.8766 2.7603 2.2993 40 1 7.4248 2.7351 1.2701 41 1 10.9368 1.5511 3.9097 42 1 2.2424 3.8827 0.1253 43 1 2.9074 5.9538 -1.0288 44 1 4.8654 5.9567 -2.5220 45 1 6.1625 3.8905 -2.8556 46 1 5.5026 1.8216 -1.6948 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457992362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:01 Heat of formation + Delta-G solvation = -67.998745 kcal Electronic energy + Delta-G solvation = -25718.163697 eV Core-core repulsion = 22186.521471 eV Total energy + Delta-G solvation = -3531.642226 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.20481 -38.65048 -37.55174 -36.17728 -33.41526 -32.60732 -31.03369 -30.79421 -30.50300 -27.18323 -25.73097 -25.46629 -24.52854 -23.09401 -22.39877 -21.81430 -20.10961 -18.81808 -17.52519 -17.07540 -16.73125 -15.84934 -15.70093 -15.16589 -14.91580 -14.67198 -14.55809 -14.29577 -13.95132 -13.45336 -13.32993 -12.93613 -12.87803 -12.66404 -12.46694 -12.27188 -12.20287 -11.88034 -11.40177 -11.35954 -11.20898 -11.11883 -10.94946 -10.86436 -10.66690 -10.39449 -10.34792 -10.18067 -9.64107 -9.45572 -9.23179 -8.92591 -8.80464 -8.60995 -8.45506 -8.31109 -6.02607 -4.12506 1.23346 1.40115 2.94028 3.26790 3.33595 3.35755 3.40980 3.64607 4.05958 4.40245 4.62859 4.79075 4.97186 4.97231 5.00897 5.10594 5.17994 5.24154 5.24349 5.32780 5.46603 5.53466 5.63236 5.85883 5.88002 6.01592 6.03760 6.22020 6.32312 6.40339 6.49029 6.49112 6.50289 6.76818 6.82216 6.91073 6.94239 7.01096 7.01717 7.07345 7.35172 7.55209 7.69068 8.00304 8.03391 8.14808 8.38049 8.67224 8.88358 9.53375 10.98816 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014984 B = 0.003998 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.236288 B = 7002.585764 C = 8178.889519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 O -0.352 6.352 4 C 0.116 3.884 5 H 0.089 0.911 6 C 0.487 3.513 7 O -0.535 6.535 8 N -0.710 5.710 9 C 0.132 3.868 10 C 0.056 3.944 11 C -0.130 4.130 12 C -0.129 4.129 13 C -0.505 4.505 14 H 0.058 0.942 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.085 4.085 22 C -0.084 4.084 23 C -0.123 4.123 24 C -0.115 4.115 25 C -0.119 4.119 26 C -0.107 4.107 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.397 0.603 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.005 0.995 36 H 0.086 0.914 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.085 0.915 40 H 0.006 0.994 41 H 0.259 0.741 42 H 0.128 0.872 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 0.857 -14.108 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.270 6.270 4 C 0.055 3.945 5 H 0.107 0.893 6 C 0.270 3.730 7 O -0.412 6.412 8 N -0.363 5.363 9 C 0.010 3.990 10 C 0.055 3.945 11 C -0.188 4.188 12 C -0.187 4.187 13 C -0.543 4.543 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.524 5.524 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.086 4.086 22 C -0.102 4.102 23 C -0.141 4.141 24 C -0.133 4.133 25 C -0.137 4.137 26 C -0.125 4.125 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.232 0.768 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.024 0.976 36 H 0.105 0.895 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.104 0.896 40 H 0.025 0.975 41 H 0.069 0.931 42 H 0.146 0.854 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.143 0.857 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.724 1.026 -13.448 17.871 hybrid contribution 0.932 -0.215 0.661 1.162 sum -10.792 0.811 -12.788 16.753 Atomic orbital electron populations 1.21697 0.93489 1.02128 1.03140 1.22578 0.95879 0.83524 1.00169 1.87964 1.17759 1.26737 1.94555 1.20726 0.83711 0.96936 0.93152 0.89286 1.20961 0.83349 0.77608 0.91032 1.90677 1.55322 1.49536 1.45643 1.46297 1.05941 1.73057 1.10960 1.21729 0.97330 1.00453 0.79496 1.18365 0.87094 0.92868 0.96182 1.21827 1.04530 0.97532 0.94882 1.21807 1.04402 0.97549 0.94909 1.21021 0.91722 1.50629 0.90954 0.92412 1.24873 0.96793 0.94797 0.97017 1.69810 1.01887 1.50696 1.30044 0.86526 0.78854 0.77531 0.85043 1.19766 1.21068 1.21052 1.19380 0.96893 0.93935 0.98376 1.21026 0.99101 0.91769 0.98289 1.21165 0.97488 0.98010 0.97424 1.21194 0.95519 0.98157 0.98419 1.21074 0.99830 0.92703 1.00047 1.20974 0.96260 0.98950 0.96286 0.91156 0.92027 0.91552 0.92818 0.93429 0.76801 0.92728 0.92738 0.97622 0.89548 0.95461 0.95503 0.89621 0.97494 0.93080 0.85411 0.85960 0.86062 0.85705 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.16 0.38 -1.08 16 2 C 0.05 0.66 6.46 37.16 0.24 0.90 16 3 O -0.35 -5.18 8.84 -55.09 -0.49 -5.67 16 4 C 0.12 1.67 2.72 -29.03 -0.08 1.59 16 5 H 0.09 1.05 7.65 -51.92 -0.40 0.65 16 6 C 0.49 8.81 7.11 -10.98 -0.08 8.74 16 7 O -0.53 -11.65 16.51 -14.30 -0.24 -11.89 16 8 N -0.71 -12.97 4.91 -60.29 -0.30 -13.26 16 9 C 0.13 2.86 4.50 -4.04 -0.02 2.84 16 10 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 11 C -0.13 -2.91 8.08 37.16 0.30 -2.60 16 12 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 13 C -0.50 -13.25 8.01 -34.44 -0.28 -13.53 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 16 N -0.89 -23.50 9.35 55.43 0.52 -22.98 16 17 Si 0.89 20.74 29.54 -169.99 -5.02 15.71 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.09 -1.16 4.92 -104.63 -0.51 -1.67 16 22 C -0.08 -1.15 9.35 -39.58 -0.37 -1.52 16 23 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 24 C -0.11 -1.24 10.05 -39.58 -0.40 -1.64 16 25 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 26 C -0.11 -1.26 9.67 -39.58 -0.38 -1.64 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.40 6.57 6.16 -40.82 -0.25 6.32 16 33 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 36 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 40 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 41 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 42 H 0.13 1.83 7.77 -52.49 -0.41 1.42 16 43 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 46 H 0.12 1.22 8.04 -52.49 -0.42 0.79 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -29.87 374.39 -9.17 -39.04 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.43 Total: 6.32 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -1.86 Total: -12.92 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.22 Total: -36.24 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.72 Total: -17.55 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.87 -9.17 -39.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.960 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds