Wall clock time and date at job start Tue Mar 31 2020 09:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.42893 * 114.00274 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47214 * 29.99871 * 4 3 2 6 6 C 1.50703 * 109.47218 * 270.00111 * 4 3 2 7 7 O 1.21283 * 120.00093 * 354.99791 * 6 4 3 8 8 N 1.34777 * 120.00177 * 174.99818 * 6 4 3 9 9 C 1.46497 * 120.00108 * 180.02562 * 8 6 4 10 10 C 1.53003 * 109.47200 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.46892 * 299.99836 * 10 9 8 12 12 C 1.52996 * 109.47228 * 59.99512 * 10 9 8 13 13 C 1.50703 * 109.47269 * 179.97438 * 10 9 8 14 14 H 1.07999 * 119.99744 * 359.97438 * 13 10 9 15 15 C 1.37873 * 119.99681 * 179.97438 * 13 10 9 16 16 N 1.31516 * 120.00669 * 0.02562 * 15 13 10 17 17 Si 1.86808 * 119.99677 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.46805 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47142 * 120.00299 * 17 15 13 20 20 H 1.48500 * 109.47158 * 240.00164 * 17 15 13 21 21 C 1.50698 * 109.47425 * 150.00074 * 4 3 2 22 22 C 1.38231 * 119.99738 * 39.72469 * 21 4 3 23 23 C 1.38237 * 119.99851 * 179.79171 * 22 21 4 24 24 C 1.38236 * 120.00125 * 0.43713 * 23 22 21 25 25 C 1.38234 * 119.99681 * 359.82210 * 24 23 22 26 26 C 1.38237 * 119.99974 * 220.00262 * 21 4 3 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 31 31 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 32 32 H 0.97003 * 119.99660 * 0.02562 * 8 6 4 33 33 H 1.08997 * 109.47220 * 299.99978 * 9 8 6 34 34 H 1.08998 * 109.46962 * 60.00382 * 9 8 6 35 35 H 1.09005 * 109.47217 * 60.00254 * 11 10 9 36 36 H 1.09002 * 109.47262 * 179.97438 * 11 10 9 37 37 H 1.08998 * 109.47504 * 300.00078 * 11 10 9 38 38 H 1.08997 * 109.46897 * 60.00518 * 12 10 9 39 39 H 1.09007 * 109.47021 * 180.02562 * 12 10 9 40 40 H 1.08995 * 109.47454 * 299.99997 * 12 10 9 41 41 H 0.96992 * 120.00089 * 179.97438 * 16 15 13 42 42 H 1.08001 * 120.00182 * 0.02562 * 22 21 4 43 43 H 1.08005 * 120.00163 * 180.28128 * 23 22 21 44 44 H 1.07995 * 120.00333 * 179.82920 * 24 23 22 45 45 H 1.08004 * 119.99742 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.00423 * 359.97346 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8636 0.6015 -0.5130 6 6 3.9310 1.5000 1.4216 7 8 3.1415 1.5295 2.3418 8 7 5.2557 1.5030 1.6700 9 6 5.7419 1.5411 3.0514 10 6 7.2720 1.5370 3.0538 11 6 7.7796 0.2662 2.3694 12 6 7.7865 2.7636 2.2979 13 6 7.7722 1.5769 4.4749 14 1 7.0691 1.6031 5.2942 15 6 9.1273 1.5800 4.7288 16 7 9.9835 1.5486 3.7310 17 14 9.7473 1.6302 6.4902 18 1 8.5909 1.6609 7.4213 19 1 10.5681 0.4225 6.7607 20 1 10.5759 2.8464 6.6889 21 6 3.8348 2.7263 -0.7098 22 6 3.1032 3.8849 -0.5269 23 6 3.4763 5.0474 -1.1752 24 6 4.5755 5.0492 -2.0134 25 6 5.3039 3.8893 -2.2004 26 6 4.9334 2.7278 -1.5488 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 5.8872 1.4798 0.9339 33 1 5.3807 2.4466 3.5388 34 1 5.3750 0.6674 3.5899 35 1 7.4178 0.2377 1.3416 36 1 8.8696 0.2633 2.3708 37 1 7.4130 -0.6078 2.9079 38 1 7.4250 3.6689 2.7854 39 1 8.8766 2.7603 2.2993 40 1 7.4248 2.7351 1.2701 41 1 10.9368 1.5511 3.9097 42 1 2.2424 3.8827 0.1253 43 1 2.9074 5.9538 -1.0288 44 1 4.8654 5.9567 -2.5220 45 1 6.1625 3.8905 -2.8556 46 1 5.5026 1.8216 -1.6948 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457992362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:01 Heat of formation + Delta-G solvation = -83.481539 kcal Electronic energy + Delta-G solvation = -25718.835081 eV Core-core repulsion = 22186.521471 eV Total energy + Delta-G solvation = -3532.313611 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.44532 -39.79146 -38.77832 -37.85504 -35.08243 -33.73814 -32.60166 -31.83167 -31.44558 -28.46541 -27.56905 -27.35775 -26.15102 -24.00514 -23.32371 -22.84808 -21.48273 -20.63486 -18.88250 -18.11984 -17.83037 -17.70719 -16.75823 -16.65521 -16.41994 -16.00286 -15.79704 -15.50581 -15.09108 -14.85461 -14.60998 -14.46139 -14.24476 -14.01701 -13.62395 -13.37719 -13.21869 -13.14590 -13.11986 -12.88530 -12.70210 -12.58712 -12.26957 -12.24649 -12.14802 -12.03102 -11.84423 -11.53525 -11.49829 -11.24072 -10.72685 -10.44963 -10.40381 -10.00013 -9.81377 -9.66188 -8.02871 -6.18390 0.32162 0.51056 1.40646 1.44998 1.54082 1.54822 2.08524 2.45983 2.62087 3.00190 3.20696 3.61957 3.78535 3.83239 4.11216 4.16255 4.17937 4.30539 4.34942 4.41301 4.45044 4.48114 4.62631 4.67956 4.69796 4.81647 4.96104 5.01121 5.02217 5.04675 5.10411 5.15824 5.18338 5.23106 5.33682 5.54207 5.55157 5.57211 5.62547 5.66716 5.66967 6.02299 6.09670 6.14262 6.20372 6.42873 6.60943 6.85069 7.22991 7.49253 8.96197 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014984 B = 0.003998 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.236288 B = 7002.585764 C = 8178.889519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 O -0.370 6.370 4 C 0.126 3.874 5 H 0.121 0.879 6 C 0.485 3.515 7 O -0.578 6.578 8 N -0.702 5.702 9 C 0.148 3.852 10 C 0.052 3.948 11 C -0.120 4.120 12 C -0.117 4.117 13 C -0.529 4.529 14 H 0.042 0.958 15 C 0.031 3.969 16 N -0.897 5.897 17 Si 0.944 3.056 18 H -0.277 1.277 19 H -0.280 1.280 20 H -0.281 1.281 21 C -0.103 4.103 22 C -0.108 4.108 23 C -0.131 4.131 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.110 4.110 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.408 0.592 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.038 0.962 36 H 0.064 0.936 37 H 0.019 0.981 38 H 0.013 0.987 39 H 0.064 0.936 40 H 0.036 0.964 41 H 0.261 0.739 42 H 0.108 0.892 43 H 0.138 0.862 44 H 0.148 0.852 45 H 0.152 0.848 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.688 0.773 -16.395 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.030 4.030 3 O -0.288 6.288 4 C 0.064 3.936 5 H 0.138 0.862 6 C 0.272 3.728 7 O -0.458 6.458 8 N -0.354 5.354 9 C 0.024 3.976 10 C 0.051 3.949 11 C -0.177 4.177 12 C -0.175 4.175 13 C -0.568 4.568 14 H 0.060 0.940 15 C -0.169 4.169 16 N -0.536 5.536 17 Si 0.771 3.229 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.207 1.207 21 C -0.103 4.103 22 C -0.126 4.126 23 C -0.148 4.148 24 C -0.133 4.133 25 C -0.139 4.139 26 C -0.128 4.128 27 H 0.112 0.888 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.245 0.755 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.032 0.968 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.126 0.874 43 H 0.156 0.844 44 H 0.166 0.834 45 H 0.170 0.830 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.189 0.938 -15.765 19.355 hybrid contribution 0.733 -0.157 1.348 1.542 sum -10.455 0.781 -14.417 17.827 Atomic orbital electron populations 1.21715 0.92181 1.03557 1.02642 1.22822 0.97100 0.82516 1.00592 1.87973 1.18035 1.28436 1.94343 1.20717 0.83750 0.98812 0.90313 0.86184 1.21788 0.82599 0.75880 0.92577 1.90653 1.56290 1.51296 1.47571 1.46095 1.06519 1.73089 1.09746 1.21288 0.96321 0.98697 0.81258 1.18362 0.87837 0.93677 0.95016 1.21662 1.02937 0.96532 0.96607 1.21634 1.02846 0.96601 0.96380 1.21275 0.91952 1.51298 0.92239 0.94006 1.25413 0.96921 0.94637 0.99948 1.69899 1.01972 1.50599 1.31085 0.85730 0.78082 0.77605 0.81523 1.20236 1.20563 1.20688 1.19421 0.98040 0.93307 0.99561 1.21054 0.99284 0.93085 0.99197 1.21405 0.98172 0.97919 0.97345 1.21574 0.94671 0.99383 0.97654 1.21478 1.00359 0.92240 0.99778 1.21275 0.95564 1.00379 0.95615 0.88765 0.91219 0.93312 0.94580 0.90652 0.75464 0.94893 0.94250 0.94328 0.91711 0.96229 0.96777 0.91682 0.94558 0.92973 0.87395 0.84437 0.83406 0.83032 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 10.28 71.98 0.74 -1.98 16 2 C 0.05 1.05 6.46 71.98 0.46 1.51 16 3 O -0.37 -10.73 8.84 -129.99 -1.15 -11.88 16 4 C 0.13 3.45 2.72 29.10 0.08 3.52 16 5 H 0.12 2.50 7.65 -2.38 -0.02 2.48 16 6 C 0.49 17.52 7.11 87.66 0.62 18.14 16 7 O -0.58 -25.95 16.51 15.95 0.26 -25.68 16 8 N -0.70 -25.06 4.91 -463.06 -2.27 -27.33 16 9 C 0.15 6.49 4.50 86.38 0.39 6.88 16 10 C 0.05 2.40 0.50 -52.93 -0.03 2.37 16 11 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 12 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 13 C -0.53 -28.18 8.01 25.60 0.21 -27.97 16 14 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 15 C 0.03 1.62 5.15 84.65 0.44 2.05 16 16 N -0.90 -47.35 9.35 21.45 0.20 -47.15 16 17 Si 0.94 42.65 29.54 68.60 2.03 44.68 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 C -0.10 -2.64 4.92 -19.87 -0.10 -2.74 16 22 C -0.11 -2.93 9.35 22.27 0.21 -2.72 16 23 C -0.13 -2.88 10.05 22.27 0.22 -2.65 16 24 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 25 C -0.12 -2.21 10.05 22.27 0.22 -1.98 16 26 C -0.11 -2.27 9.67 22.27 0.22 -2.05 16 27 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 32 H 0.41 12.58 6.16 -92.71 -0.57 12.01 16 33 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.04 1.38 6.86 -2.38 -0.02 1.37 16 36 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 37 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 39 H 0.06 3.20 6.07 -2.38 -0.01 3.19 16 40 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 41 H 0.26 13.20 8.31 -92.71 -0.77 12.43 16 42 H 0.11 3.25 7.77 -2.91 -0.02 3.23 16 43 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 44 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 45 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 46 H 0.15 2.26 8.04 -2.91 -0.02 2.24 16 Total: -1.00 -65.68 374.39 4.52 -61.16 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.39 Total: 25.02 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 5.07 Total: -18.82 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -2.07 Total: -74.48 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -0.89 Total: -37.56 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -65.68 4.52 -61.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.325 kcal (2) G-P(sol) polarization free energy of solvation -65.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds