Wall clock time and date at job start Tue Mar 31 2020 09:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47312 * 2 1 4 4 C 1.42898 * 113.99874 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47259 * 30.00319 * 4 3 2 6 6 C 1.50699 * 109.46964 * 150.00106 * 4 3 2 7 7 O 1.21280 * 119.99966 * 5.00002 * 6 4 3 8 8 N 1.34774 * 120.00093 * 184.99640 * 6 4 3 9 9 C 1.46500 * 120.00022 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.47078 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47068 * 299.99634 * 10 9 8 12 12 C 1.52999 * 109.47387 * 60.00025 * 10 9 8 13 13 C 1.50699 * 109.47149 * 179.97438 * 10 9 8 14 14 H 1.07999 * 119.99969 * 0.02562 * 13 10 9 15 15 C 1.37878 * 120.00065 * 179.97438 * 13 10 9 16 16 N 1.31512 * 119.99984 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00070 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47013 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46775 * 120.00335 * 17 15 13 20 20 H 1.48499 * 109.47385 * 240.00680 * 17 15 13 21 21 C 1.50703 * 109.47171 * 270.00168 * 4 3 2 22 22 C 1.38236 * 119.99787 * 324.72807 * 21 4 3 23 23 C 1.38241 * 119.99636 * 179.81278 * 22 21 4 24 24 C 1.38234 * 120.00115 * 0.39672 * 23 22 21 25 25 C 1.38240 * 119.99714 * 359.85290 * 24 23 22 26 26 C 1.38228 * 120.00011 * 145.00451 * 21 4 3 27 27 H 1.09004 * 109.46662 * 299.99956 * 1 2 3 28 28 H 1.08997 * 109.47257 * 59.99492 * 1 2 3 29 29 H 1.08997 * 109.47288 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47156 * 239.99911 * 2 1 3 31 31 H 1.08997 * 109.47257 * 120.00508 * 2 1 3 32 32 H 0.96999 * 119.99866 * 0.02562 * 8 6 4 33 33 H 1.08999 * 109.47229 * 300.00134 * 9 8 6 34 34 H 1.08996 * 109.47573 * 60.00199 * 9 8 6 35 35 H 1.09001 * 109.46690 * 60.00154 * 11 10 9 36 36 H 1.09000 * 109.47625 * 179.97438 * 11 10 9 37 37 H 1.08997 * 109.47159 * 300.00461 * 11 10 9 38 38 H 1.08995 * 109.47393 * 59.99705 * 12 10 9 39 39 H 1.09000 * 109.47386 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.46962 * 299.99684 * 12 10 9 41 41 H 0.96998 * 120.00209 * 179.97438 * 16 15 13 42 42 H 1.07996 * 120.00216 * 359.97438 * 22 21 4 43 43 H 1.08000 * 119.99857 * 180.22806 * 23 22 21 44 44 H 1.07998 * 120.00030 * 179.84064 * 24 23 22 45 45 H 1.08003 * 119.99655 * 179.97438 * 25 24 23 46 46 H 1.08004 * 120.00508 * 359.97379 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6014 -0.5130 6 6 3.8349 2.7262 -0.7098 7 8 2.9866 3.5046 -1.0912 8 7 5.1388 2.9937 -0.9212 9 6 5.5315 4.2248 -1.6114 10 6 7.0564 4.2838 -1.7211 11 6 7.6696 4.2670 -0.3195 12 6 7.5580 3.0738 -2.5118 13 6 7.4603 5.5499 -2.4316 14 1 6.7050 6.2434 -2.7705 15 6 8.7942 5.8235 -2.6480 16 7 9.7141 4.9792 -2.2348 17 14 9.2949 7.3926 -3.5293 18 1 8.0802 8.1669 -3.8899 19 1 10.1549 8.2093 -2.6355 20 1 10.0476 7.0492 -4.7624 21 6 3.9311 1.4998 1.4216 22 6 3.1872 2.1346 2.3987 23 6 3.6442 2.1677 3.7029 24 6 4.8490 1.5733 4.0285 25 6 5.5953 0.9430 3.0504 26 6 5.1365 0.9066 1.7469 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 5.8172 2.3710 -0.6165 33 1 5.0949 4.2366 -2.6101 34 1 5.1738 5.0869 -1.0484 35 1 7.3774 3.3510 0.1939 36 1 8.7560 4.3086 -0.3976 37 1 7.3122 5.1291 0.2437 38 1 7.1211 3.0857 -3.5103 39 1 8.6444 3.1155 -2.5896 40 1 7.2659 2.1577 -1.9983 41 1 10.6525 5.1715 -2.3874 42 1 2.2478 2.6023 2.1436 43 1 3.0612 2.6605 4.4670 44 1 5.2072 1.6014 5.0470 45 1 6.5368 0.4789 3.3047 46 1 5.7197 0.4142 0.9828 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457992620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:06 Heat of formation + Delta-G solvation = -66.799915 kcal Electronic energy + Delta-G solvation = -25700.558641 eV Core-core repulsion = 22168.968400 eV Total energy + Delta-G solvation = -3531.590241 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.21427 -38.63001 -37.61537 -36.22432 -33.38909 -32.53224 -31.06039 -30.80592 -30.57234 -27.22683 -25.72616 -25.46427 -24.50956 -23.11931 -22.47884 -21.79559 -20.10068 -18.81217 -17.47839 -17.00791 -16.79691 -15.89469 -15.80835 -15.10821 -14.92777 -14.68488 -14.65360 -14.41106 -13.80145 -13.42107 -13.40454 -12.96644 -12.90003 -12.62651 -12.50256 -12.35945 -12.17289 -11.97129 -11.42227 -11.37687 -11.20963 -11.15693 -11.00069 -10.87073 -10.65978 -10.38755 -10.20587 -9.98344 -9.63561 -9.53322 -9.29574 -8.95126 -8.80263 -8.67036 -8.45136 -8.30720 -6.02171 -4.11956 1.21690 1.37573 2.97827 3.12673 3.27422 3.36080 3.41319 3.68533 4.20000 4.41483 4.55692 4.78116 4.91942 4.95492 4.98546 5.07629 5.15934 5.20104 5.24419 5.24813 5.42440 5.49510 5.59108 5.76719 5.86877 5.96727 6.00767 6.22269 6.33254 6.38728 6.45958 6.47342 6.50670 6.77635 6.82480 6.90945 6.93096 7.00410 7.02274 7.08043 7.35835 7.55695 7.69658 8.00838 8.03536 8.15368 8.38599 8.68564 8.88969 9.53880 10.99295 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.003790 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.115394 B = 7385.284617 C = 8323.175334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.349 6.349 4 C 0.115 3.885 5 H 0.090 0.910 6 C 0.512 3.488 7 O -0.528 6.528 8 N -0.711 5.711 9 C 0.133 3.867 10 C 0.056 3.944 11 C -0.129 4.129 12 C -0.130 4.130 13 C -0.505 4.505 14 H 0.058 0.942 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.112 4.112 22 C -0.087 4.087 23 C -0.123 4.123 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.108 4.108 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.397 0.603 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.006 0.994 36 H 0.085 0.915 37 H 0.026 0.974 38 H 0.027 0.973 39 H 0.086 0.914 40 H 0.005 0.995 41 H 0.259 0.741 42 H 0.128 0.872 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.120 -12.970 9.960 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.267 6.267 4 C 0.053 3.947 5 H 0.108 0.892 6 C 0.295 3.705 7 O -0.405 6.405 8 N -0.363 5.363 9 C 0.011 3.989 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.188 4.188 13 C -0.543 4.543 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.113 4.113 22 C -0.105 4.105 23 C -0.141 4.141 24 C -0.134 4.134 25 C -0.136 4.136 26 C -0.126 4.126 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.232 0.768 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.025 0.975 36 H 0.104 0.896 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.104 0.896 40 H 0.024 0.976 41 H 0.069 0.931 42 H 0.146 0.854 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.142 0.858 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.668 -12.242 9.660 18.894 hybrid contribution 0.908 0.304 -0.274 0.996 sum -9.760 -11.938 9.386 18.052 Atomic orbital electron populations 1.21713 0.93475 1.02048 1.03382 1.22592 0.95852 0.83767 1.00114 1.88049 1.17869 1.26116 1.94674 1.20737 0.83551 0.97894 0.92488 0.89202 1.19999 0.83482 0.87028 0.79996 1.90688 1.50351 1.48575 1.50852 1.46190 1.05951 1.25188 1.58942 1.21748 0.98376 0.83606 0.95149 1.18363 0.87045 0.95433 0.93629 1.21811 1.04552 0.96216 0.96116 1.21828 1.04616 0.94701 0.97653 1.21026 0.92069 1.04448 1.36782 0.92364 1.24874 0.96514 0.96659 0.95454 1.69811 1.00450 1.35540 1.46656 0.86521 0.78594 0.83455 0.79360 1.19741 1.21072 1.21065 1.20069 0.96089 1.00300 0.94837 1.21020 0.99893 0.97163 0.92384 1.21163 0.96636 0.99932 0.96381 1.21196 0.94949 0.97797 0.99415 1.21097 0.99794 0.99816 0.92918 1.21014 0.95240 0.99379 0.96964 0.91817 0.91623 0.91167 0.93230 0.93242 0.76805 0.92596 0.92649 0.97509 0.89614 0.95486 0.95399 0.89551 0.97635 0.93086 0.85373 0.86018 0.86106 0.85765 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.97 16 2 C 0.05 0.57 6.46 37.16 0.24 0.81 16 3 O -0.35 -5.12 8.68 -55.09 -0.48 -5.59 16 4 C 0.12 1.65 2.73 -29.03 -0.08 1.57 16 5 H 0.09 1.06 7.70 -51.93 -0.40 0.66 16 6 C 0.51 9.43 7.17 -10.99 -0.08 9.35 16 7 O -0.53 -11.85 16.51 -14.30 -0.24 -12.08 16 8 N -0.71 -13.02 4.91 -60.30 -0.30 -13.32 16 9 C 0.13 2.89 4.50 -4.04 -0.02 2.87 16 10 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 11 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 12 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 13 C -0.50 -13.25 8.01 -34.44 -0.28 -13.53 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 16 N -0.89 -23.51 9.35 55.43 0.52 -22.99 16 17 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.11 -1.49 4.91 -104.62 -0.51 -2.00 16 22 C -0.09 -1.15 9.35 -39.58 -0.37 -1.52 16 23 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 24 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 25 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 26 C -0.11 -1.27 9.52 -39.59 -0.38 -1.64 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.40 6.55 6.00 -40.82 -0.24 6.31 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 36 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 40 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 41 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 42 H 0.13 1.78 7.64 -52.49 -0.40 1.38 16 43 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 45 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 46 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -30.11 373.88 -9.16 -39.27 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.42 Total: 5.93 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -1.85 Total: -12.58 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.22 Total: -36.31 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.71 Total: -17.68 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.11 -9.16 -39.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.532 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds