Wall clock time and date at job start Tue Mar 31 2020 09:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47312 * 2 1 4 4 C 1.42898 * 113.99874 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47259 * 30.00319 * 4 3 2 6 6 C 1.50699 * 109.46964 * 150.00106 * 4 3 2 7 7 O 1.21280 * 119.99966 * 5.00002 * 6 4 3 8 8 N 1.34774 * 120.00093 * 184.99640 * 6 4 3 9 9 C 1.46500 * 120.00022 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.47078 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47068 * 299.99634 * 10 9 8 12 12 C 1.52999 * 109.47387 * 60.00025 * 10 9 8 13 13 C 1.50699 * 109.47149 * 179.97438 * 10 9 8 14 14 H 1.07999 * 119.99969 * 0.02562 * 13 10 9 15 15 C 1.37878 * 120.00065 * 179.97438 * 13 10 9 16 16 N 1.31512 * 119.99984 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00070 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47013 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46775 * 120.00335 * 17 15 13 20 20 H 1.48499 * 109.47385 * 240.00680 * 17 15 13 21 21 C 1.50703 * 109.47171 * 270.00168 * 4 3 2 22 22 C 1.38236 * 119.99787 * 324.72807 * 21 4 3 23 23 C 1.38241 * 119.99636 * 179.81278 * 22 21 4 24 24 C 1.38234 * 120.00115 * 0.39672 * 23 22 21 25 25 C 1.38240 * 119.99714 * 359.85290 * 24 23 22 26 26 C 1.38228 * 120.00011 * 145.00451 * 21 4 3 27 27 H 1.09004 * 109.46662 * 299.99956 * 1 2 3 28 28 H 1.08997 * 109.47257 * 59.99492 * 1 2 3 29 29 H 1.08997 * 109.47288 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47156 * 239.99911 * 2 1 3 31 31 H 1.08997 * 109.47257 * 120.00508 * 2 1 3 32 32 H 0.96999 * 119.99866 * 0.02562 * 8 6 4 33 33 H 1.08999 * 109.47229 * 300.00134 * 9 8 6 34 34 H 1.08996 * 109.47573 * 60.00199 * 9 8 6 35 35 H 1.09001 * 109.46690 * 60.00154 * 11 10 9 36 36 H 1.09000 * 109.47625 * 179.97438 * 11 10 9 37 37 H 1.08997 * 109.47159 * 300.00461 * 11 10 9 38 38 H 1.08995 * 109.47393 * 59.99705 * 12 10 9 39 39 H 1.09000 * 109.47386 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.46962 * 299.99684 * 12 10 9 41 41 H 0.96998 * 120.00209 * 179.97438 * 16 15 13 42 42 H 1.07996 * 120.00216 * 359.97438 * 22 21 4 43 43 H 1.08000 * 119.99857 * 180.22806 * 23 22 21 44 44 H 1.07998 * 120.00030 * 179.84064 * 24 23 22 45 45 H 1.08003 * 119.99655 * 179.97438 * 25 24 23 46 46 H 1.08004 * 120.00508 * 359.97379 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6014 -0.5130 6 6 3.8349 2.7262 -0.7098 7 8 2.9866 3.5046 -1.0912 8 7 5.1388 2.9937 -0.9212 9 6 5.5315 4.2248 -1.6114 10 6 7.0564 4.2838 -1.7211 11 6 7.6696 4.2670 -0.3195 12 6 7.5580 3.0738 -2.5118 13 6 7.4603 5.5499 -2.4316 14 1 6.7050 6.2434 -2.7705 15 6 8.7942 5.8235 -2.6480 16 7 9.7141 4.9792 -2.2348 17 14 9.2949 7.3926 -3.5293 18 1 8.0802 8.1669 -3.8899 19 1 10.1549 8.2093 -2.6355 20 1 10.0476 7.0492 -4.7624 21 6 3.9311 1.4998 1.4216 22 6 3.1872 2.1346 2.3987 23 6 3.6442 2.1677 3.7029 24 6 4.8490 1.5733 4.0285 25 6 5.5953 0.9430 3.0504 26 6 5.1365 0.9066 1.7469 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 5.8172 2.3710 -0.6165 33 1 5.0949 4.2366 -2.6101 34 1 5.1738 5.0869 -1.0484 35 1 7.3774 3.3510 0.1939 36 1 8.7560 4.3086 -0.3976 37 1 7.3122 5.1291 0.2437 38 1 7.1211 3.0857 -3.5103 39 1 8.6444 3.1155 -2.5896 40 1 7.2659 2.1577 -1.9983 41 1 10.6525 5.1715 -2.3874 42 1 2.2478 2.6023 2.1436 43 1 3.0612 2.6605 4.4670 44 1 5.2072 1.6014 5.0470 45 1 6.5368 0.4789 3.3047 46 1 5.7197 0.4142 0.9828 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457992620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:05 Heat of formation + Delta-G solvation = -82.489749 kcal Electronic energy + Delta-G solvation = -25701.239003 eV Core-core repulsion = 22168.968400 eV Total energy + Delta-G solvation = -3532.270604 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.42549 -39.84092 -38.71935 -37.93218 -35.08192 -33.63466 -32.57607 -31.83024 -31.50071 -28.49051 -27.56207 -27.35507 -26.14793 -23.95360 -23.32525 -22.85212 -21.48816 -20.63183 -18.70930 -18.17844 -17.87901 -17.68698 -16.83560 -16.57919 -16.41216 -16.10205 -15.70691 -15.53165 -15.20972 -14.80746 -14.64479 -14.26260 -14.23778 -14.01609 -13.64457 -13.50896 -13.24085 -13.19254 -13.09474 -12.79381 -12.69574 -12.58023 -12.26434 -12.24171 -12.14088 -12.03449 -11.87940 -11.49255 -11.31204 -11.10216 -10.72079 -10.58614 -10.40063 -10.00810 -9.82535 -9.68026 -8.02441 -6.17799 0.31732 0.49821 1.41215 1.45530 1.54760 1.56702 1.89049 2.46286 2.76685 3.07696 3.21226 3.56365 3.80152 3.85204 4.11221 4.16398 4.19416 4.30612 4.36183 4.41580 4.48039 4.49052 4.60821 4.67699 4.70512 4.83204 4.96921 5.00746 5.03332 5.05340 5.10852 5.14993 5.19183 5.25595 5.33586 5.53237 5.54801 5.57906 5.61632 5.67423 5.67726 6.07454 6.09837 6.15053 6.20911 6.43471 6.60808 6.85711 7.23066 7.49781 8.96676 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.003790 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.115394 B = 7385.284617 C = 8323.175334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 O -0.377 6.377 4 C 0.125 3.875 5 H 0.120 0.880 6 C 0.509 3.491 7 O -0.576 6.576 8 N -0.701 5.701 9 C 0.148 3.852 10 C 0.053 3.947 11 C -0.117 4.117 12 C -0.120 4.120 13 C -0.529 4.529 14 H 0.042 0.958 15 C 0.030 3.970 16 N -0.897 5.897 17 Si 0.944 3.056 18 H -0.277 1.277 19 H -0.281 1.281 20 H -0.280 1.280 21 C -0.125 4.125 22 C -0.108 4.108 23 C -0.130 4.130 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.113 4.113 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.409 0.591 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.064 0.936 37 H 0.014 0.986 38 H 0.019 0.981 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.261 0.739 42 H 0.110 0.890 43 H 0.138 0.862 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 -14.898 11.152 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 O -0.296 6.296 4 C 0.064 3.936 5 H 0.137 0.863 6 C 0.295 3.705 7 O -0.455 6.455 8 N -0.353 5.353 9 C 0.025 3.975 10 C 0.052 3.948 11 C -0.175 4.175 12 C -0.178 4.178 13 C -0.568 4.568 14 H 0.061 0.939 15 C -0.170 4.170 16 N -0.536 5.536 17 Si 0.771 3.229 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.206 1.206 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.147 4.147 24 C -0.134 4.134 25 C -0.139 4.139 26 C -0.131 4.131 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.246 0.754 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.033 0.967 38 H 0.038 0.962 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.128 0.872 43 H 0.156 0.844 44 H 0.165 0.835 45 H 0.167 0.833 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.993 -14.203 10.867 20.486 hybrid contribution 0.665 0.888 -0.596 1.259 sum -9.328 -13.315 10.272 19.231 Atomic orbital electron populations 1.21746 0.92602 1.03565 1.02511 1.22849 0.96624 0.82172 1.01289 1.88025 1.18022 1.28714 1.94836 1.20618 0.83950 0.96003 0.93044 0.86281 1.20824 0.82653 0.88013 0.79038 1.90661 1.51515 1.50585 1.52743 1.45972 1.06608 1.24215 1.58554 1.21317 0.97277 0.84545 0.94390 1.18355 0.87820 0.94776 0.93858 1.21640 1.02907 0.97166 0.95803 1.21667 1.02925 0.95694 0.97517 1.21285 0.92145 1.05691 1.37658 0.93932 1.25415 0.96530 0.98941 0.96065 1.69899 1.00528 1.36321 1.46824 0.85726 0.77946 0.80686 0.78555 1.20204 1.20711 1.20584 1.20024 0.97044 1.01599 0.93948 1.21049 0.99801 0.98128 0.93620 1.21404 0.97343 1.00016 0.95984 1.21563 0.94289 0.96705 1.00806 1.21472 1.00622 0.99310 0.92527 1.21283 0.94605 0.99099 0.98090 0.92363 0.92824 0.88409 0.91973 0.91966 0.75409 0.94122 0.94699 0.94524 0.91670 0.96725 0.96200 0.91694 0.94332 0.92981 0.87153 0.84425 0.83535 0.83323 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 10.28 71.98 0.74 -1.76 16 2 C 0.05 0.92 6.46 71.98 0.46 1.38 16 3 O -0.38 -10.91 8.68 -129.99 -1.13 -12.04 16 4 C 0.13 3.43 2.73 29.10 0.08 3.51 16 5 H 0.12 2.49 7.70 -2.39 -0.02 2.47 16 6 C 0.51 18.66 7.17 87.66 0.63 19.29 16 7 O -0.58 -26.53 16.51 15.96 0.26 -26.26 16 8 N -0.70 -25.10 4.91 -463.07 -2.27 -27.37 16 9 C 0.15 6.50 4.50 86.38 0.39 6.89 16 10 C 0.05 2.44 0.50 -52.93 -0.03 2.41 16 11 C -0.12 -5.23 8.08 71.98 0.58 -4.64 16 12 C -0.12 -5.26 8.08 71.98 0.58 -4.67 16 13 C -0.53 -28.18 8.01 25.60 0.21 -27.97 16 14 H 0.04 2.34 7.74 -2.91 -0.02 2.31 16 15 C 0.03 1.60 5.15 84.66 0.44 2.03 16 16 N -0.90 -47.35 9.35 21.45 0.20 -47.15 16 17 Si 0.94 42.68 29.54 68.60 2.03 44.71 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 C -0.13 -3.13 4.91 -19.87 -0.10 -3.23 16 22 C -0.11 -2.81 9.35 22.27 0.21 -2.60 16 23 C -0.13 -2.76 10.05 22.27 0.22 -2.54 16 24 C -0.12 -2.13 10.05 22.27 0.22 -1.90 16 25 C -0.12 -2.23 10.05 22.27 0.22 -2.00 16 26 C -0.11 -2.31 9.52 22.27 0.21 -2.10 16 27 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.06 8.09 -2.39 -0.02 1.04 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.41 12.54 6.00 -92.71 -0.56 11.99 16 33 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 36 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 37 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 40 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 41 H 0.26 13.20 8.31 -92.71 -0.77 12.43 16 42 H 0.11 3.18 7.64 -2.91 -0.02 3.16 16 43 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 44 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 45 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 46 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -66.07 373.88 4.56 -61.51 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.40 Total: 24.52 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 5.07 Total: -17.91 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -2.07 Total: -74.52 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.87 Total: -38.30 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -66.07 4.56 -61.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.984 kcal (2) G-P(sol) polarization free energy of solvation -66.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds