Wall clock time and date at job start Tue Mar 31 2020 10:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35991 * 116.99893 * 2 1 4 4 C 1.38564 * 120.07457 * 0.02562 * 3 2 1 5 5 C 1.38248 * 119.99732 * 179.97438 * 4 3 2 6 6 C 1.38249 * 120.14743 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.92694 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47033 * 89.99745 * 7 6 5 9 9 C 1.46903 * 110.99914 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47271 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99791 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00005 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00078 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99773 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46947 * 60.00135 * 14 12 10 16 16 H 1.48499 * 109.46958 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47029 * 300.00148 * 14 12 10 18 18 C 1.38244 * 120.14645 * 359.67715 * 6 5 4 19 19 C 1.38571 * 119.99939 * 0.60064 * 18 6 5 20 20 O 1.35994 * 120.07334 * 179.69632 * 19 18 6 21 21 C 1.42904 * 116.99908 * 5.54901 * 20 19 18 22 22 C 1.54264 * 110.02997 * 273.02239 * 21 20 19 23 23 C 1.54892 * 104.19502 * 217.10476 * 22 21 20 24 24 C 1.54888 * 102.74762 * 37.94601 * 23 22 21 25 25 C 1.53874 * 110.03046 * 155.85618 * 21 20 19 26 26 H 1.09001 * 109.47072 * 299.99943 * 1 2 3 27 27 H 1.09005 * 109.47394 * 60.00147 * 1 2 3 28 28 H 1.09004 * 109.47605 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00170 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.92094 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.46782 * 210.00266 * 7 6 5 32 32 H 1.09003 * 109.46673 * 330.00029 * 7 6 5 33 33 H 1.00899 * 110.99506 * 56.05327 * 8 7 6 34 34 H 1.08998 * 109.46994 * 300.00589 * 9 8 7 35 35 H 1.08998 * 109.46760 * 60.00082 * 9 8 7 36 36 H 0.97000 * 120.00084 * 179.97438 * 13 12 10 37 37 H 1.08003 * 120.00229 * 180.31853 * 18 6 5 38 38 H 1.08996 * 110.01630 * 34.46032 * 21 20 19 39 39 H 1.08998 * 110.48914 * 335.78342 * 22 21 20 40 40 H 1.09000 * 110.48861 * 98.42802 * 22 21 20 41 41 H 1.08998 * 110.75824 * 279.62705 * 23 22 21 42 42 H 1.09000 * 110.75506 * 156.25430 * 23 22 21 43 43 H 1.08998 * 110.48582 * 203.38045 * 24 23 22 44 44 H 1.09001 * 110.48712 * 80.73201 * 24 23 22 45 45 H 1.08992 * 110.03006 * 238.56658 * 25 21 20 46 46 H 1.09002 * 110.03269 * 359.95512 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6057 0.0011 6 6 3.3029 3.6798 0.0005 7 6 3.9837 5.0243 0.0005 8 7 4.2054 5.4608 1.3855 9 6 4.8683 6.7712 1.4247 10 6 5.0791 7.1849 2.8584 11 1 4.7529 6.5391 3.6603 12 6 5.6875 8.3882 3.1464 13 7 6.0842 9.1747 2.1699 14 14 5.9481 8.9012 4.9236 15 1 6.7991 7.8958 5.6093 16 1 6.6172 10.2263 4.9632 17 1 4.6348 8.9895 5.6110 18 6 4.0603 2.5233 0.0062 19 6 3.4359 1.2862 -0.0001 20 8 4.1795 0.1475 -0.0008 21 6 5.5948 0.2969 0.1283 22 6 6.2326 0.5091 -1.2602 23 6 7.5743 -0.2611 -1.1836 24 6 7.2010 -1.5166 -0.3568 25 6 6.2105 -0.9910 0.7027 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2146 2.3197 0.0014 30 1 1.3342 4.5115 0.0019 31 1 4.9416 4.9464 -0.5137 32 1 3.3536 5.7505 -0.5129 33 1 4.7332 4.7728 1.9014 34 1 5.8322 6.7060 0.9202 35 1 4.2439 7.5093 0.9213 36 1 6.5119 10.0214 2.3725 37 1 5.1386 2.5839 0.0110 38 1 5.8231 1.1419 0.7779 39 1 5.5966 0.0906 -2.0402 40 1 6.4111 1.5692 -1.4401 41 1 8.3304 0.3305 -0.6675 42 1 7.9158 -0.5422 -2.1798 43 1 8.0861 -1.9346 0.1226 44 1 6.7212 -2.2621 -0.9909 45 1 6.7383 -0.7709 1.6306 46 1 5.4296 -1.7297 0.8837 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517733005.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:29 Heat of formation + Delta-G solvation = -62.715307 kcal Electronic energy + Delta-G solvation = -24817.339567 eV Core-core repulsion = 21285.926448 eV Total energy + Delta-G solvation = -3531.413119 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63725 -39.07098 -37.59833 -36.36293 -34.85959 -32.51761 -30.42525 -30.17852 -28.93441 -28.09697 -27.62294 -26.44650 -24.02057 -22.70521 -21.52574 -21.09431 -20.81853 -20.17633 -18.51866 -17.26134 -16.55521 -16.39789 -15.93615 -15.70904 -15.22265 -14.77718 -14.66778 -14.47586 -14.13149 -14.03042 -13.77435 -13.55100 -13.46572 -12.79691 -12.51763 -12.24663 -12.05852 -11.98346 -11.59482 -11.37600 -11.33379 -11.30069 -11.15401 -11.05330 -10.97720 -10.86484 -10.70509 -10.68123 -10.55815 -10.49671 -9.91817 -9.22011 -8.57616 -8.48097 -7.64256 -7.30136 -6.04010 -4.06128 1.41089 1.59366 3.21178 3.28948 3.33414 3.37105 3.40528 3.84304 4.31753 4.35554 4.43184 4.67999 4.84041 4.94884 4.96699 5.07516 5.09261 5.21396 5.21889 5.24269 5.31821 5.36970 5.37774 5.41974 5.42250 5.54370 5.60372 5.64920 5.67291 5.70918 5.82843 5.92307 5.96403 6.06530 6.09194 6.20843 6.31333 6.41190 6.81643 6.87610 7.14060 7.22084 7.39512 7.68029 7.76937 8.10847 8.36951 8.58407 9.02828 9.58806 11.07021 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011587 B = 0.003417 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.991552 B = 8192.951075 C = 9781.143776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.086 3.914 4 C -0.172 4.172 5 C -0.097 4.097 6 C -0.062 4.062 7 C 0.097 3.903 8 N -0.683 5.683 9 C 0.194 3.806 10 C -0.515 4.515 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.900 3.100 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 C -0.168 4.168 19 C 0.101 3.899 20 O -0.300 6.300 21 C 0.078 3.922 22 C -0.148 4.148 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.121 4.121 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.027 0.973 32 H 0.074 0.926 33 H 0.329 0.671 34 H -0.013 1.013 35 H 0.029 0.971 36 H 0.262 0.738 37 H 0.132 0.868 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.376 -21.257 -7.872 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.041 3.959 4 C -0.191 4.191 5 C -0.116 4.116 6 C -0.063 4.063 7 C -0.033 4.033 8 N -0.313 5.313 9 C 0.067 3.933 10 C -0.554 4.554 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.727 3.273 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.187 4.187 19 C 0.056 3.944 20 O -0.214 6.214 21 C 0.021 3.979 22 C -0.186 4.186 23 C -0.161 4.161 24 C -0.160 4.160 25 C -0.158 4.158 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.114 0.886 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.145 0.855 34 H 0.004 0.996 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.150 0.850 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.891 -21.181 -7.852 23.113 hybrid contribution 0.929 0.583 0.681 1.291 sum -3.962 -20.598 -7.171 22.167 Atomic orbital electron populations 1.23004 0.79079 1.03497 1.01152 1.86133 1.20587 1.26241 1.89484 1.18188 0.89077 0.84995 1.03675 1.21027 0.99625 0.91563 1.06902 1.20772 0.94008 0.96910 0.99894 1.19751 0.93528 0.94714 0.98260 1.20848 0.97723 0.91711 0.92978 1.60730 1.54992 1.06372 1.09250 1.19581 0.91637 0.84715 0.97352 1.21145 1.38103 1.03975 0.92129 0.91995 1.24983 0.95574 0.96423 0.97535 1.69949 1.40818 1.11531 1.31478 0.86538 0.78419 0.77579 0.84735 1.20255 1.21323 1.20124 1.21019 1.00234 0.90695 1.06749 1.18115 0.88015 0.86028 1.02292 1.86211 1.18517 1.28497 1.88212 1.23158 0.78568 0.99262 0.96904 1.22954 0.97092 1.01201 0.97370 1.22448 0.96785 0.96490 1.00418 1.22343 0.98648 0.97702 0.97290 1.22195 0.98624 0.96378 0.98634 0.92809 0.92946 0.88616 0.85107 0.85370 0.95514 0.90731 0.85467 0.99563 0.95303 0.92836 0.85005 0.90437 0.90299 0.90908 0.91074 0.91180 0.91289 0.91343 0.90477 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.24 10.28 -34.21 -0.35 -4.59 16 3 C 0.09 1.25 6.70 -39.12 -0.26 0.99 16 4 C -0.17 -2.30 9.04 -39.46 -0.36 -2.66 16 5 C -0.10 -1.43 9.69 -39.57 -0.38 -1.81 16 6 C -0.06 -0.98 5.39 -104.62 -0.56 -1.55 16 7 C 0.10 1.74 5.81 -4.98 -0.03 1.71 16 8 N -0.68 -14.83 6.48 -116.34 -0.75 -15.59 16 9 C 0.19 5.09 5.44 -4.98 -0.03 5.06 16 10 C -0.51 -14.68 9.32 -34.44 -0.32 -15.00 16 11 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 14 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C -0.17 -2.51 8.44 -39.46 -0.33 -2.85 16 19 C 0.10 1.52 6.65 -39.12 -0.26 1.26 16 20 O -0.30 -4.32 9.49 -34.23 -0.32 -4.64 16 21 C 0.08 0.90 2.80 -25.61 -0.07 0.83 16 22 C -0.15 -1.54 6.13 -25.07 -0.15 -1.69 16 23 C -0.12 -1.05 6.91 -24.74 -0.17 -1.22 16 24 C -0.12 -0.99 6.83 -25.07 -0.17 -1.17 16 25 C -0.12 -1.17 6.61 -25.61 -0.17 -1.34 16 26 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 27 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.13 1.38 6.30 -52.49 -0.33 1.05 16 30 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 31 H 0.03 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 33 H 0.33 6.94 8.72 -39.29 -0.34 6.60 16 34 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.13 1.83 5.38 -52.48 -0.28 1.55 16 38 H 0.08 0.92 6.31 -51.93 -0.33 0.60 16 39 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 40 H 0.07 0.76 7.55 -51.93 -0.39 0.37 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.82 7.95 -51.93 -0.41 0.41 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -31.83 372.52 -9.97 -41.80 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -7.49 Total: 3.47 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -2.38 Total: -16.67 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: -0.02 Total: -41.71 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.68 Total: -9.24 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.83 -9.97 -41.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517733005.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.916 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds