Wall clock time and date at job start Tue Mar 31 2020 10:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35991 * 116.99893 * 2 1 4 4 C 1.38564 * 120.07457 * 0.02562 * 3 2 1 5 5 C 1.38248 * 119.99732 * 179.97438 * 4 3 2 6 6 C 1.38249 * 120.14743 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.92694 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47033 * 89.99745 * 7 6 5 9 9 C 1.46903 * 110.99914 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47271 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99791 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00005 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00078 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99773 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46947 * 60.00135 * 14 12 10 16 16 H 1.48499 * 109.46958 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47029 * 300.00148 * 14 12 10 18 18 C 1.38244 * 120.14645 * 359.67715 * 6 5 4 19 19 C 1.38571 * 119.99939 * 0.60064 * 18 6 5 20 20 O 1.35994 * 120.07334 * 179.69632 * 19 18 6 21 21 C 1.42904 * 116.99908 * 5.54901 * 20 19 18 22 22 C 1.54264 * 110.02997 * 273.02239 * 21 20 19 23 23 C 1.54892 * 104.19502 * 217.10476 * 22 21 20 24 24 C 1.54888 * 102.74762 * 37.94601 * 23 22 21 25 25 C 1.53874 * 110.03046 * 155.85618 * 21 20 19 26 26 H 1.09001 * 109.47072 * 299.99943 * 1 2 3 27 27 H 1.09005 * 109.47394 * 60.00147 * 1 2 3 28 28 H 1.09004 * 109.47605 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00170 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.92094 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.46782 * 210.00266 * 7 6 5 32 32 H 1.09003 * 109.46673 * 330.00029 * 7 6 5 33 33 H 1.00899 * 110.99506 * 56.05327 * 8 7 6 34 34 H 1.08998 * 109.46994 * 300.00589 * 9 8 7 35 35 H 1.08998 * 109.46760 * 60.00082 * 9 8 7 36 36 H 0.97000 * 120.00084 * 179.97438 * 13 12 10 37 37 H 1.08003 * 120.00229 * 180.31853 * 18 6 5 38 38 H 1.08996 * 110.01630 * 34.46032 * 21 20 19 39 39 H 1.08998 * 110.48914 * 335.78342 * 22 21 20 40 40 H 1.09000 * 110.48861 * 98.42802 * 22 21 20 41 41 H 1.08998 * 110.75824 * 279.62705 * 23 22 21 42 42 H 1.09000 * 110.75506 * 156.25430 * 23 22 21 43 43 H 1.08998 * 110.48582 * 203.38045 * 24 23 22 44 44 H 1.09001 * 110.48712 * 80.73201 * 24 23 22 45 45 H 1.08992 * 110.03006 * 238.56658 * 25 21 20 46 46 H 1.09002 * 110.03269 * 359.95512 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6057 0.0011 6 6 3.3029 3.6798 0.0005 7 6 3.9837 5.0243 0.0005 8 7 4.2054 5.4608 1.3855 9 6 4.8683 6.7712 1.4247 10 6 5.0791 7.1849 2.8584 11 1 4.7529 6.5391 3.6603 12 6 5.6875 8.3882 3.1464 13 7 6.0842 9.1747 2.1699 14 14 5.9481 8.9012 4.9236 15 1 6.7991 7.8958 5.6093 16 1 6.6172 10.2263 4.9632 17 1 4.6348 8.9895 5.6110 18 6 4.0603 2.5233 0.0062 19 6 3.4359 1.2862 -0.0001 20 8 4.1795 0.1475 -0.0008 21 6 5.5948 0.2969 0.1283 22 6 6.2326 0.5091 -1.2602 23 6 7.5743 -0.2611 -1.1836 24 6 7.2010 -1.5166 -0.3568 25 6 6.2105 -0.9910 0.7027 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2146 2.3197 0.0014 30 1 1.3342 4.5115 0.0019 31 1 4.9416 4.9464 -0.5137 32 1 3.3536 5.7505 -0.5129 33 1 4.7332 4.7728 1.9014 34 1 5.8322 6.7060 0.9202 35 1 4.2439 7.5093 0.9213 36 1 6.5119 10.0214 2.3725 37 1 5.1386 2.5839 0.0110 38 1 5.8231 1.1419 0.7779 39 1 5.5966 0.0906 -2.0402 40 1 6.4111 1.5692 -1.4401 41 1 8.3304 0.3305 -0.6675 42 1 7.9158 -0.5422 -2.1798 43 1 8.0861 -1.9346 0.1226 44 1 6.7212 -2.2621 -0.9909 45 1 6.7383 -0.7709 1.6306 46 1 5.4296 -1.7297 0.8837 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517733005.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:28 Heat of formation + Delta-G solvation = -81.500533 kcal Electronic energy + Delta-G solvation = -24818.154156 eV Core-core repulsion = 21285.926448 eV Total energy + Delta-G solvation = -3532.227708 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.69570 -40.01335 -38.74380 -37.37376 -36.49037 -34.53321 -31.81130 -31.25248 -29.72326 -29.25504 -28.59808 -27.92168 -25.59419 -23.75595 -23.45252 -22.25124 -21.67297 -21.06279 -19.58779 -18.63454 -18.14366 -17.61950 -16.89010 -16.76338 -16.54568 -16.21783 -15.94606 -15.69809 -15.38835 -15.22410 -15.07063 -14.71591 -14.33137 -14.28506 -13.99312 -13.48518 -13.26411 -13.06771 -12.91246 -12.80547 -12.74323 -12.57540 -12.34328 -12.09501 -12.06410 -12.02699 -11.96212 -11.82785 -11.65281 -11.57777 -11.39630 -11.29375 -10.66239 -9.70189 -9.15733 -8.74404 -8.22680 -6.34220 0.27805 0.42835 1.41346 1.44814 1.52916 2.22035 2.37347 2.39891 2.68448 3.10407 3.52389 3.57592 3.64763 3.81235 3.90346 3.94902 4.00647 4.13169 4.31475 4.38076 4.43851 4.44414 4.47221 4.47358 4.54375 4.62124 4.65479 4.73021 4.76148 4.80931 4.86296 4.99690 5.06925 5.10551 5.12310 5.16754 5.22519 5.24576 5.30059 5.40668 5.59157 5.67702 5.69923 6.00318 6.16652 6.41174 6.64004 6.67283 6.86109 7.36604 8.88450 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011587 B = 0.003417 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.991552 B = 8192.951075 C = 9781.143776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.082 3.918 4 C -0.165 4.165 5 C -0.102 4.102 6 C -0.078 4.078 7 C 0.102 3.898 8 N -0.681 5.681 9 C 0.208 3.792 10 C -0.538 4.538 11 H 0.063 0.937 12 C 0.003 3.997 13 N -0.933 5.933 14 Si 0.972 3.028 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.269 1.269 18 C -0.168 4.168 19 C 0.088 3.912 20 O -0.311 6.311 21 C 0.069 3.931 22 C -0.147 4.147 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.120 4.120 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.118 0.882 29 H 0.162 0.838 30 H 0.136 0.864 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.333 0.667 34 H -0.037 1.037 35 H 0.004 0.996 36 H 0.266 0.734 37 H 0.135 0.865 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 -22.595 -7.074 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.036 3.964 4 C -0.184 4.184 5 C -0.121 4.121 6 C -0.079 4.079 7 C -0.027 4.027 8 N -0.311 5.311 9 C 0.081 3.919 10 C -0.576 4.576 11 H 0.081 0.919 12 C -0.195 4.195 13 N -0.573 5.573 14 Si 0.796 3.204 15 H -0.191 1.191 16 H -0.207 1.207 17 H -0.194 1.194 18 C -0.187 4.187 19 C 0.042 3.958 20 O -0.226 6.226 21 C 0.013 3.987 22 C -0.185 4.185 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.158 4.158 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.179 0.821 30 H 0.153 0.847 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.149 0.851 34 H -0.019 1.019 35 H 0.022 0.978 36 H 0.075 0.925 37 H 0.153 0.847 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.397 -22.549 -7.064 24.238 hybrid contribution 1.005 0.900 0.369 1.399 sum -4.393 -21.648 -6.694 23.082 Atomic orbital electron populations 1.23347 0.76625 1.05470 1.02250 1.86117 1.23176 1.25808 1.89233 1.18427 0.89196 0.85861 1.02917 1.21275 1.01079 0.90424 1.05585 1.20928 0.93558 0.97944 0.99698 1.19556 0.94198 0.93562 1.00588 1.20799 0.98007 0.93085 0.90768 1.60608 1.53925 1.04808 1.11779 1.19236 0.90194 0.86434 0.96084 1.21498 1.38542 1.04539 0.93010 0.91895 1.25931 0.94945 0.96286 1.02356 1.70075 1.41330 1.11983 1.33921 0.85395 0.78663 0.77425 0.78876 1.19120 1.20665 1.19358 1.21014 1.00429 0.90609 1.06668 1.18305 0.88728 0.86143 1.02580 1.86200 1.19789 1.28412 1.88222 1.23403 0.77537 1.00148 0.97645 1.22925 0.98060 1.01164 0.96363 1.22460 0.95620 0.96369 1.01312 1.22342 0.98836 0.97486 0.96797 1.22238 0.98777 0.95211 0.99528 0.91861 0.91561 0.86402 0.82074 0.84655 0.95468 0.90856 0.85054 1.01913 0.97820 0.92543 0.84714 0.91221 0.91075 0.91491 0.90665 0.89971 0.89550 0.91118 0.89565 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.51 10.28 -79.58 -0.82 -9.32 16 3 C 0.08 2.30 6.70 22.57 0.15 2.45 16 4 C -0.17 -4.14 9.04 22.35 0.20 -3.94 16 5 C -0.10 -2.94 9.69 22.27 0.22 -2.73 16 6 C -0.08 -2.51 5.39 -19.86 -0.11 -2.61 16 7 C 0.10 3.77 5.81 85.56 0.50 4.27 16 8 N -0.68 -30.18 6.48 -521.99 -3.38 -33.56 16 9 C 0.21 11.29 5.44 85.56 0.47 11.75 16 10 C -0.54 -31.02 9.32 25.60 0.24 -30.78 16 11 H 0.06 3.54 7.81 -2.91 -0.02 3.51 16 12 C 0.00 0.18 5.46 84.65 0.46 0.65 16 13 N -0.93 -56.50 13.29 21.45 0.28 -56.21 16 14 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 C -0.17 -5.09 8.44 22.35 0.19 -4.90 16 19 C 0.09 2.64 6.65 22.57 0.15 2.79 16 20 O -0.31 -8.99 9.49 -79.62 -0.76 -9.75 16 21 C 0.07 1.60 2.80 31.32 0.09 1.68 16 22 C -0.15 -3.04 6.13 31.67 0.19 -2.84 16 23 C -0.12 -1.88 6.91 31.89 0.22 -1.66 16 24 C -0.12 -1.71 6.83 31.67 0.22 -1.50 16 25 C -0.12 -2.22 6.61 31.32 0.21 -2.02 16 26 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 27 H 0.07 0.84 7.67 -2.38 -0.02 0.82 16 28 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.16 2.94 6.30 -2.91 -0.02 2.92 16 30 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 31 H 0.03 1.00 8.09 -2.39 -0.02 0.98 16 32 H 0.07 2.69 8.08 -2.39 -0.02 2.67 16 33 H 0.33 14.28 8.72 -89.69 -0.78 13.50 16 34 H -0.04 -2.13 8.14 -2.39 -0.02 -2.15 16 35 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.14 3.87 5.38 -2.91 -0.02 3.86 16 38 H 0.07 1.70 6.31 -2.39 -0.02 1.68 16 39 H 0.07 1.56 8.08 -2.39 -0.02 1.54 16 40 H 0.07 1.42 7.55 -2.39 -0.02 1.41 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 46 H 0.07 1.47 7.95 -2.39 -0.02 1.45 16 Total: -1.00 -68.42 372.52 2.04 -66.37 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.19 Total: 24.04 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 4.50 Total: -28.01 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -3.10 Total: -89.77 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -1.57 Total: -19.07 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -68.42 2.04 -66.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517733005.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.128 kcal (2) G-P(sol) polarization free energy of solvation -68.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds