Wall clock time and date at job start Tue Mar 31 2020 09:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.46774 * 2 1 4 4 C 1.42901 * 113.99834 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47212 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.50923 * 305.00435 * 5 4 3 7 7 C 1.53095 * 109.51152 * 184.91541 * 5 4 3 8 8 N 1.47020 * 109.25782 * 183.26270 * 7 5 4 9 9 C 1.46901 * 110.99526 * 182.35107 * 8 7 5 10 10 C 1.50704 * 109.47084 * 170.27419 * 9 8 7 11 11 C 1.38639 * 119.74711 * 269.72565 * 10 9 8 12 12 C 1.37621 * 120.24344 * 179.76022 * 11 10 9 13 13 C 1.40712 * 119.74617 * 0.49059 * 12 11 10 14 14 C 1.41401 * 120.24330 * 179.78862 * 13 12 11 15 15 H 1.08003 * 119.99728 * 204.36515 * 14 13 12 16 16 C 1.39942 * 119.99881 * 24.35868 * 14 13 12 17 17 N 1.30822 * 119.99840 * 17.86941 * 16 14 13 18 18 Si 1.86800 * 119.99863 * 197.86048 * 16 14 13 19 19 H 1.48498 * 109.46787 * 90.00818 * 18 16 14 20 20 H 1.48498 * 109.47087 * 210.00291 * 18 16 14 21 21 H 1.48496 * 109.47409 * 330.00452 * 18 16 14 22 22 C 1.40717 * 119.51314 * 359.76036 * 13 12 11 23 23 C 1.37615 * 119.74493 * 0.02562 * 22 13 12 24 24 C 1.47012 * 110.78786 * 58.55352 * 8 7 5 25 25 C 1.53099 * 109.25499 * 301.40421 * 24 8 7 26 26 O 1.43010 * 109.26223 * 56.85285 * 25 24 8 27 27 H 1.08998 * 109.47721 * 59.99845 * 1 2 3 28 28 H 1.09001 * 109.47011 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47291 * 299.98979 * 1 2 3 30 30 H 1.09000 * 109.47291 * 240.01021 * 2 1 3 31 31 H 1.08998 * 109.47721 * 120.00155 * 2 1 3 32 32 H 1.08996 * 109.47507 * 300.00399 * 4 3 2 33 33 H 1.09001 * 109.47277 * 60.00677 * 4 3 2 34 34 H 1.09006 * 109.50634 * 303.15720 * 7 5 4 35 35 H 1.08999 * 109.50852 * 63.28035 * 7 5 4 36 36 H 1.09001 * 109.47364 * 290.27103 * 9 8 7 37 37 H 1.08999 * 109.47338 * 50.27284 * 9 8 7 38 38 H 1.07994 * 119.87363 * 0.02562 * 11 10 9 39 39 H 1.07998 * 120.12243 * 180.23361 * 12 11 10 40 40 H 0.97006 * 119.99968 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.12712 * 179.97438 * 22 13 12 42 42 H 1.08000 * 119.87737 * 179.97438 * 23 22 13 43 43 H 1.09003 * 109.50708 * 181.47416 * 24 8 7 44 44 H 1.08998 * 109.54879 * 61.36106 * 24 8 7 45 45 H 1.09005 * 109.50584 * 296.91335 * 25 24 8 46 46 H 1.08999 * 109.54137 * 176.81494 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9384 0.0012 6 1 3.3500 3.4424 -0.8404 7 6 5.3462 3.0618 -0.1218 8 7 5.7257 4.4800 -0.0421 9 6 7.1752 4.6473 -0.2120 10 6 7.4975 6.1116 -0.3637 11 6 7.5213 6.6835 -1.6264 12 6 7.8095 8.0208 -1.7764 13 6 8.0908 8.8058 -0.6429 14 6 8.3927 10.1798 -0.7852 15 1 8.9737 10.6862 -0.0286 16 6 7.9386 10.8835 -1.9064 17 7 6.9663 10.3972 -2.6342 18 14 8.7206 12.5172 -2.3635 19 1 9.8615 12.2794 -3.2839 20 1 7.7136 13.3772 -3.0355 21 1 9.2083 13.1936 -1.1348 22 6 8.0689 8.2134 0.6333 23 6 7.7738 6.8752 0.7599 24 6 5.2722 5.0710 1.2253 25 6 3.7518 4.9275 1.3337 26 8 3.3992 3.5459 1.2239 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8332 0.9768 0.8907 33 1 3.8339 0.9766 -0.8892 34 1 5.8229 2.5119 0.6897 35 1 5.6685 2.6514 -1.0788 36 1 7.6918 4.2503 0.6619 37 1 7.5012 4.1094 -1.1022 38 1 7.3087 6.0782 -2.4952 39 1 7.8239 8.4651 -2.7606 40 1 6.6513 10.8852 -3.4112 41 1 8.2836 8.8065 1.5100 42 1 7.7568 6.4183 1.7384 43 1 5.5408 6.1270 1.2512 44 1 5.7469 4.5541 2.0593 45 1 3.2750 5.4898 0.5308 46 1 3.4169 5.3132 2.2966 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528725650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:45 Heat of formation + Delta-G solvation = -74.606254 kcal Electronic energy + Delta-G solvation = -24721.285200 eV Core-core repulsion = 21189.356450 eV Total energy + Delta-G solvation = -3531.928750 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.67838 -38.07823 -37.50506 -35.45149 -33.58885 -32.62803 -30.89474 -30.50013 -29.25950 -28.23548 -26.49370 -24.66676 -23.51028 -22.97185 -22.04592 -20.99332 -20.20830 -19.71548 -17.30105 -16.90871 -16.74770 -16.15713 -15.65765 -15.37360 -15.05298 -14.95275 -14.60874 -14.02733 -13.84936 -13.69638 -13.39954 -13.35872 -13.17578 -12.72464 -12.50644 -12.01725 -11.92664 -11.70925 -11.60584 -11.52400 -11.48339 -11.29247 -11.06798 -11.00894 -10.81858 -10.53893 -10.38767 -10.32994 -9.78496 -9.70468 -9.39665 -9.35345 -9.13223 -8.04827 -7.44676 -7.29917 -6.76325 -4.35549 2.72023 3.05810 3.07021 3.10155 3.14981 3.41353 3.78421 3.92488 4.22330 4.67146 4.79972 4.83897 4.96659 5.06095 5.08001 5.14238 5.20702 5.26566 5.35103 5.44239 5.47240 5.59836 5.66667 5.67540 5.73957 5.78943 5.87719 5.92856 5.94931 6.16110 6.16958 6.25346 6.34001 6.42255 6.95122 7.02275 7.06353 7.21770 7.28283 7.31106 7.37168 7.40388 7.61127 7.86655 8.05266 8.13603 8.29722 8.64407 8.89229 8.97474 10.17860 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.027937 B = 0.002534 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.005804 B =11047.539010 C =11340.684338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.380 6.380 4 C 0.073 3.927 5 C 0.097 3.903 6 H 0.075 0.925 7 C 0.026 3.974 8 N -0.528 5.528 9 C 0.122 3.878 10 C -0.210 4.210 11 C -0.079 4.079 12 C -0.167 4.167 13 C 0.112 3.888 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.790 5.790 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.227 4.227 23 C -0.085 4.085 24 C 0.019 3.981 25 C 0.064 3.936 26 O -0.378 6.378 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.037 0.963 35 H 0.083 0.917 36 H 0.024 0.976 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.280 0.720 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.033 0.967 45 H 0.060 0.940 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.864 -15.844 3.046 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.004 4.004 5 C 0.038 3.962 6 H 0.092 0.908 7 C -0.102 4.102 8 N -0.253 5.253 9 C -0.004 4.004 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.187 4.187 13 C 0.110 3.890 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.415 5.415 18 Si 0.732 3.268 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.247 4.247 23 C -0.104 4.104 24 C -0.109 4.109 25 C -0.013 4.013 26 O -0.297 6.297 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.135 0.865 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.119 0.881 44 H 0.052 0.948 45 H 0.078 0.922 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.478 -15.484 2.605 17.392 hybrid contribution 1.018 0.289 0.207 1.078 sum -6.461 -15.195 2.812 16.749 Atomic orbital electron populations 1.21731 0.93769 1.02030 1.03293 1.22450 0.95688 0.84045 0.99847 1.87964 1.20579 1.25975 1.95362 1.22443 0.81884 0.95375 1.00680 1.22052 0.93210 0.92203 0.88689 0.90751 1.22638 0.95093 0.90915 1.01601 1.62300 1.16263 1.12688 1.34029 1.20755 0.84976 0.95624 0.99069 1.18808 1.15040 0.93460 0.93815 1.20484 0.99356 0.95073 0.94857 1.21308 1.06132 0.92068 0.99160 1.17627 0.87783 0.92991 0.90636 1.19606 1.30107 0.94471 1.05031 0.90499 1.25915 0.93193 0.99849 0.95284 1.69835 1.19163 1.38448 1.14092 0.86324 0.79738 0.81149 0.79581 1.19290 1.20322 1.18652 1.20932 1.12693 0.94587 0.96467 1.20352 1.00289 0.94222 0.95505 1.22814 0.95593 1.02484 0.90013 1.22695 0.94107 0.82230 1.02233 1.87979 1.79242 1.24410 1.38087 0.91829 0.91262 0.91757 0.93572 0.93530 0.92681 0.91844 0.94475 0.89888 0.95773 0.91535 0.89531 0.86515 0.90861 0.89162 0.89944 0.88129 0.94842 0.92152 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.79 16 2 C 0.06 0.51 6.66 37.16 0.25 0.76 16 3 O -0.38 -4.79 10.31 -39.86 -0.41 -5.20 16 4 C 0.07 0.83 5.60 37.16 0.21 1.04 16 5 C 0.10 1.32 3.09 -26.68 -0.08 1.24 16 6 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 7 C 0.03 0.36 4.93 -3.71 -0.02 0.34 16 8 N -0.53 -8.77 4.72 -235.74 -1.11 -9.88 16 9 C 0.12 2.13 5.11 -4.97 -0.03 2.10 16 10 C -0.21 -4.45 4.91 -104.32 -0.51 -4.96 16 11 C -0.08 -1.82 9.67 -39.66 -0.38 -2.20 16 12 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 13 C 0.11 2.97 5.58 -106.82 -0.60 2.38 16 14 C -0.46 -12.23 9.05 -37.74 -0.34 -12.57 16 15 H 0.08 1.96 7.91 -52.48 -0.42 1.55 16 16 C 0.08 1.89 5.14 -17.34 -0.09 1.81 16 17 N -0.79 -20.44 10.95 55.55 0.61 -19.83 16 18 Si 0.91 18.63 29.60 -169.99 -5.03 13.60 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 22 C -0.23 -5.51 9.80 -38.87 -0.38 -5.89 16 23 C -0.08 -1.85 7.88 -39.66 -0.31 -2.16 16 24 C 0.02 0.31 5.26 -3.71 -0.02 0.29 16 25 C 0.06 0.95 7.01 37.21 0.26 1.21 16 26 O -0.38 -5.85 10.44 -39.86 -0.42 -6.27 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 36 H 0.02 0.40 8.06 -51.93 -0.42 -0.01 16 37 H 0.07 1.09 7.98 -51.93 -0.41 0.67 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 39 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 40 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 41 H 0.09 2.08 8.06 -52.48 -0.42 1.65 16 42 H 0.08 1.60 8.00 -52.49 -0.42 1.18 16 43 H 0.10 1.83 6.00 -51.93 -0.31 1.52 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -28.52 370.31 -10.56 -39.08 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.78 Total: 5.02 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -2.00 Total: -22.09 kcal Atomic # 7 Polarization: -29.21 SS G_CDS: -0.50 Total: -29.71 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -0.83 Total: -11.47 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.52 -10.56 -39.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528725650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.530 kcal (2) G-P(sol) polarization free energy of solvation -28.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds