Wall clock time and date at job start Tue Mar 31 2020 09:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.46774 * 2 1 4 4 C 1.42901 * 113.99834 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47212 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.50923 * 305.00435 * 5 4 3 7 7 C 1.53095 * 109.51152 * 184.91541 * 5 4 3 8 8 N 1.47020 * 109.25782 * 183.26270 * 7 5 4 9 9 C 1.46901 * 110.99526 * 182.35107 * 8 7 5 10 10 C 1.50704 * 109.47084 * 170.27419 * 9 8 7 11 11 C 1.38639 * 119.74711 * 269.72565 * 10 9 8 12 12 C 1.37621 * 120.24344 * 179.76022 * 11 10 9 13 13 C 1.40712 * 119.74617 * 0.49059 * 12 11 10 14 14 C 1.41401 * 120.24330 * 179.78862 * 13 12 11 15 15 H 1.08003 * 119.99728 * 204.36515 * 14 13 12 16 16 C 1.39942 * 119.99881 * 24.35868 * 14 13 12 17 17 N 1.30822 * 119.99840 * 17.86941 * 16 14 13 18 18 Si 1.86800 * 119.99863 * 197.86048 * 16 14 13 19 19 H 1.48498 * 109.46787 * 90.00818 * 18 16 14 20 20 H 1.48498 * 109.47087 * 210.00291 * 18 16 14 21 21 H 1.48496 * 109.47409 * 330.00452 * 18 16 14 22 22 C 1.40717 * 119.51314 * 359.76036 * 13 12 11 23 23 C 1.37615 * 119.74493 * 0.02562 * 22 13 12 24 24 C 1.47012 * 110.78786 * 58.55352 * 8 7 5 25 25 C 1.53099 * 109.25499 * 301.40421 * 24 8 7 26 26 O 1.43010 * 109.26223 * 56.85285 * 25 24 8 27 27 H 1.08998 * 109.47721 * 59.99845 * 1 2 3 28 28 H 1.09001 * 109.47011 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47291 * 299.98979 * 1 2 3 30 30 H 1.09000 * 109.47291 * 240.01021 * 2 1 3 31 31 H 1.08998 * 109.47721 * 120.00155 * 2 1 3 32 32 H 1.08996 * 109.47507 * 300.00399 * 4 3 2 33 33 H 1.09001 * 109.47277 * 60.00677 * 4 3 2 34 34 H 1.09006 * 109.50634 * 303.15720 * 7 5 4 35 35 H 1.08999 * 109.50852 * 63.28035 * 7 5 4 36 36 H 1.09001 * 109.47364 * 290.27103 * 9 8 7 37 37 H 1.08999 * 109.47338 * 50.27284 * 9 8 7 38 38 H 1.07994 * 119.87363 * 0.02562 * 11 10 9 39 39 H 1.07998 * 120.12243 * 180.23361 * 12 11 10 40 40 H 0.97006 * 119.99968 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.12712 * 179.97438 * 22 13 12 42 42 H 1.08000 * 119.87737 * 179.97438 * 23 22 13 43 43 H 1.09003 * 109.50708 * 181.47416 * 24 8 7 44 44 H 1.08998 * 109.54879 * 61.36106 * 24 8 7 45 45 H 1.09005 * 109.50584 * 296.91335 * 25 24 8 46 46 H 1.08999 * 109.54137 * 176.81494 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9384 0.0012 6 1 3.3500 3.4424 -0.8404 7 6 5.3462 3.0618 -0.1218 8 7 5.7257 4.4800 -0.0421 9 6 7.1752 4.6473 -0.2120 10 6 7.4975 6.1116 -0.3637 11 6 7.5213 6.6835 -1.6264 12 6 7.8095 8.0208 -1.7764 13 6 8.0908 8.8058 -0.6429 14 6 8.3927 10.1798 -0.7852 15 1 8.9737 10.6862 -0.0286 16 6 7.9386 10.8835 -1.9064 17 7 6.9663 10.3972 -2.6342 18 14 8.7206 12.5172 -2.3635 19 1 9.8615 12.2794 -3.2839 20 1 7.7136 13.3772 -3.0355 21 1 9.2083 13.1936 -1.1348 22 6 8.0689 8.2134 0.6333 23 6 7.7738 6.8752 0.7599 24 6 5.2722 5.0710 1.2253 25 6 3.7518 4.9275 1.3337 26 8 3.3992 3.5459 1.2239 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8332 0.9768 0.8907 33 1 3.8339 0.9766 -0.8892 34 1 5.8229 2.5119 0.6897 35 1 5.6685 2.6514 -1.0788 36 1 7.6918 4.2503 0.6619 37 1 7.5012 4.1094 -1.1022 38 1 7.3087 6.0782 -2.4952 39 1 7.8239 8.4651 -2.7606 40 1 6.6513 10.8852 -3.4112 41 1 8.2836 8.8065 1.5100 42 1 7.7568 6.4183 1.7384 43 1 5.5408 6.1270 1.2512 44 1 5.7469 4.5541 2.0593 45 1 3.2750 5.4898 0.5308 46 1 3.4169 5.3132 2.2966 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528725650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:44 Heat of formation + Delta-G solvation = -91.297579 kcal Electronic energy + Delta-G solvation = -24722.008990 eV Core-core repulsion = 21189.356450 eV Total energy + Delta-G solvation = -3532.652540 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.86345 -39.48471 -38.70656 -36.85566 -35.36055 -33.57693 -32.26478 -31.68241 -31.09857 -29.64677 -27.90076 -26.02127 -24.90070 -23.64612 -23.32378 -22.82250 -21.56399 -21.26105 -19.20563 -17.84541 -17.64680 -17.35956 -17.18308 -16.56483 -16.31807 -16.10086 -15.96064 -15.70419 -15.24286 -15.03274 -14.93098 -14.43343 -14.21311 -14.09923 -13.79693 -13.43590 -13.35937 -13.10805 -12.93599 -12.77906 -12.70498 -12.45164 -12.39309 -12.25583 -12.19901 -12.03391 -11.89350 -11.54468 -11.40585 -11.21617 -11.00260 -10.62639 -10.55107 -9.37547 -9.32291 -9.11096 -8.62554 -6.32216 0.95125 1.16539 1.37587 1.50755 1.50821 2.20715 2.50223 2.69758 2.75382 3.14033 3.78487 3.91955 3.94906 4.01404 4.07275 4.17615 4.19388 4.26614 4.32763 4.41025 4.45974 4.49552 4.51775 4.54576 4.60756 4.62576 4.64782 4.78529 4.81424 4.88738 4.96644 5.00641 5.05618 5.08134 5.16936 5.28206 5.39765 5.47983 5.72445 5.92103 6.00111 6.11646 6.12967 6.16991 6.29852 6.32283 6.40868 6.72916 6.95890 7.06013 8.34010 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.027937 B = 0.002534 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.005804 B =11047.539010 C =11340.684338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.410 6.410 4 C 0.076 3.924 5 C 0.093 3.907 6 H 0.058 0.942 7 C 0.031 3.969 8 N -0.546 5.546 9 C 0.127 3.873 10 C -0.195 4.195 11 C -0.085 4.085 12 C -0.192 4.192 13 C 0.079 3.921 14 C -0.502 4.502 15 H 0.073 0.927 16 C 0.034 3.966 17 N -0.825 5.825 18 Si 0.982 3.018 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.243 4.243 23 C -0.082 4.082 24 C 0.023 3.977 25 C 0.067 3.933 26 O -0.389 6.389 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.102 0.898 36 H 0.039 0.961 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.287 0.713 41 H 0.094 0.906 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.043 0.957 45 H 0.046 0.954 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.875 -17.933 3.380 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.330 6.330 4 C 0.000 4.000 5 C 0.035 3.965 6 H 0.076 0.924 7 C -0.097 4.097 8 N -0.271 5.271 9 C 0.001 3.999 10 C -0.196 4.196 11 C -0.104 4.104 12 C -0.211 4.211 13 C 0.077 3.923 14 C -0.531 4.531 15 H 0.091 0.909 16 C -0.181 4.181 17 N -0.451 5.451 18 Si 0.803 3.197 19 H -0.187 1.187 20 H -0.193 1.193 21 H -0.183 1.183 22 C -0.262 4.262 23 C -0.100 4.100 24 C -0.105 4.105 25 C -0.009 4.009 26 O -0.308 6.308 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.120 0.880 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.129 0.871 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.496 -17.598 2.947 19.354 hybrid contribution 0.939 0.748 0.156 1.210 sum -6.557 -16.851 3.103 18.346 Atomic orbital electron populations 1.21767 0.93225 1.03349 1.02438 1.22678 0.96230 0.82711 1.01057 1.87924 1.21247 1.28227 1.95621 1.22463 0.81689 0.93637 1.02244 1.22185 0.93252 0.93601 0.87448 0.92432 1.22672 0.94907 0.88964 1.03116 1.62172 1.15466 1.15046 1.34442 1.20687 0.85918 0.92721 1.00589 1.19234 1.12059 0.95643 0.92682 1.20726 0.98852 0.94279 0.96519 1.21268 1.08158 0.93408 0.98304 1.17967 0.89001 0.93646 0.91727 1.19831 1.31735 0.95108 1.06447 0.90861 1.26758 0.93155 1.03521 0.94648 1.69894 1.20248 1.40253 1.14726 0.85212 0.78827 0.76435 0.79274 1.18678 1.19286 1.18257 1.21135 1.13226 0.95977 0.95912 1.20637 0.98913 0.93336 0.97123 1.22729 0.96408 1.01077 0.90291 1.22679 0.93257 0.82236 1.02761 1.87976 1.79496 1.24377 1.38996 0.92497 0.88870 0.92786 0.91970 0.92595 0.91903 0.89333 0.93275 0.87950 0.94265 0.89925 0.87905 0.88442 0.90233 0.88793 0.87125 0.90523 0.93896 0.93565 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 10.28 71.98 0.74 -1.36 16 2 C 0.05 0.78 6.66 71.98 0.48 1.26 16 3 O -0.41 -9.65 10.31 -144.56 -1.49 -11.14 16 4 C 0.08 1.53 5.60 71.98 0.40 1.93 16 5 C 0.09 2.37 3.09 30.63 0.09 2.46 16 6 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 7 C 0.03 0.75 4.93 86.31 0.43 1.18 16 8 N -0.55 -16.88 4.72 -899.76 -4.25 -21.13 16 9 C 0.13 4.07 5.11 85.56 0.44 4.51 16 10 C -0.19 -8.01 4.91 -19.67 -0.10 -8.11 16 11 C -0.08 -3.93 9.67 22.22 0.21 -3.72 16 12 C -0.19 -10.26 8.70 22.73 0.20 -10.06 16 13 C 0.08 4.33 5.58 -21.29 -0.12 4.21 16 14 C -0.50 -27.62 9.05 23.46 0.21 -27.41 16 15 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 16 C 0.03 1.74 5.14 85.26 0.44 2.18 16 17 N -0.83 -44.20 10.95 21.83 0.24 -43.96 16 18 Si 0.98 38.95 29.60 68.60 2.03 40.98 16 19 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 20 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 22 C -0.24 -11.99 9.80 22.73 0.22 -11.77 16 23 C -0.08 -3.48 7.88 22.22 0.18 -3.31 16 24 C 0.02 0.71 5.26 86.31 0.45 1.16 16 25 C 0.07 1.93 7.01 72.02 0.50 2.44 16 26 O -0.39 -11.45 10.44 -144.56 -1.51 -12.95 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.10 2.07 8.09 -2.39 -0.02 2.05 16 36 H 0.04 1.16 8.06 -2.39 -0.02 1.14 16 37 H 0.08 2.41 7.98 -2.39 -0.02 2.39 16 38 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 39 H 0.10 5.49 6.16 -2.91 -0.02 5.48 16 40 H 0.29 13.91 8.30 -92.70 -0.77 13.14 16 41 H 0.09 4.42 8.06 -2.91 -0.02 4.40 16 42 H 0.11 4.06 8.00 -2.91 -0.02 4.04 16 43 H 0.08 2.72 6.00 -2.39 -0.01 2.70 16 44 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -63.38 370.31 0.74 -62.64 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.94 Total: 29.96 kcal Atomic # 6 Polarization: -49.17 SS G_CDS: 4.78 Total: -44.38 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: -4.01 Total: -65.09 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -3.00 Total: -24.09 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -63.38 0.74 -62.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528725650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.661 kcal (2) G-P(sol) polarization free energy of solvation -63.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds