Wall clock time and date at job start Tue Mar 31 2020 09:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47004 * 2 1 4 4 C 1.42902 * 114.00042 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47199 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.51076 * 54.91029 * 5 4 3 7 7 C 1.53102 * 109.50932 * 174.99802 * 5 4 3 8 8 N 1.47013 * 109.25981 * 176.78292 * 7 5 4 9 9 C 1.46900 * 110.99854 * 177.60741 * 8 7 5 10 10 C 1.50693 * 109.47128 * 170.00128 * 9 8 7 11 11 C 1.38639 * 119.74672 * 269.72756 * 10 9 8 12 12 C 1.37620 * 120.24596 * 179.71987 * 11 10 9 13 13 C 1.40714 * 119.74436 * 0.57101 * 12 11 10 14 14 C 1.41404 * 120.24257 * 179.67996 * 13 12 11 15 15 H 1.07993 * 120.00129 * 24.40212 * 14 13 12 16 16 C 1.39949 * 119.99842 * 204.39971 * 14 13 12 17 17 N 1.30822 * 119.99803 * 17.85444 * 16 14 13 18 18 Si 1.86796 * 119.99824 * 197.85096 * 16 14 13 19 19 H 1.48498 * 109.47103 * 90.00156 * 18 16 14 20 20 H 1.48499 * 109.47350 * 210.00051 * 18 16 14 21 21 H 1.48501 * 109.47435 * 330.00352 * 18 16 14 22 22 C 1.40712 * 119.51433 * 359.70216 * 13 12 11 23 23 C 1.37623 * 119.74314 * 0.02562 * 22 13 12 24 24 C 1.47010 * 110.75215 * 301.38251 * 8 7 5 25 25 C 1.53097 * 109.25952 * 58.61614 * 24 8 7 26 26 O 1.43011 * 109.50704 * 294.77710 * 5 4 3 27 27 H 1.09007 * 109.46727 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47211 * 300.00401 * 1 2 3 29 29 H 1.09004 * 109.46871 * 60.01092 * 1 2 3 30 30 H 1.09008 * 109.46883 * 119.99409 * 2 1 3 31 31 H 1.09000 * 109.47693 * 239.99719 * 2 1 3 32 32 H 1.09003 * 109.46567 * 299.99879 * 4 3 2 33 33 H 1.08999 * 109.47365 * 59.99257 * 4 3 2 34 34 H 1.09009 * 109.50337 * 296.71865 * 7 5 4 35 35 H 1.09000 * 109.50538 * 56.84360 * 7 5 4 36 36 H 1.09003 * 109.47102 * 290.00008 * 9 8 7 37 37 H 1.09001 * 109.47195 * 49.99697 * 9 8 7 38 38 H 1.07995 * 119.87713 * 359.97438 * 11 10 9 39 39 H 1.07997 * 120.12958 * 180.27549 * 12 11 10 40 40 H 0.97001 * 119.99457 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.12908 * 180.02562 * 22 13 12 42 42 H 1.07994 * 119.87313 * 179.97438 * 23 22 13 43 43 H 1.09005 * 109.50615 * 178.55306 * 24 8 7 44 44 H 1.09000 * 109.50619 * 298.63714 * 24 8 7 45 45 H 1.09006 * 109.50574 * 63.08526 * 25 24 8 46 46 H 1.09002 * 109.50691 * 183.21406 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9384 -0.0012 6 1 3.3489 3.4427 0.8396 7 6 5.3462 3.0617 0.1240 8 7 5.7258 4.4798 0.0454 9 6 7.1750 4.6473 0.2184 10 6 7.5593 6.0670 -0.1095 11 6 7.9135 6.4014 -1.4075 12 6 8.2607 7.6960 -1.7196 13 6 8.2668 8.6792 -0.7130 14 6 8.6284 10.0112 -1.0206 15 1 8.5197 10.3810 -2.0294 16 6 9.1270 10.8503 -0.0176 17 7 9.5865 10.3382 1.0951 18 14 9.1364 12.7014 -0.2678 19 1 7.8610 13.2749 0.2319 20 1 10.2731 13.2962 0.4801 21 1 9.2825 13.0048 -1.7141 22 6 7.9110 8.3271 0.6021 23 6 7.5619 7.0274 0.8902 24 6 5.2750 5.0702 -1.2233 25 6 3.7549 4.9267 -1.3350 26 8 3.4022 3.5451 -1.2251 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8933 -0.5138 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 3.8339 0.9765 0.8892 33 1 3.8333 0.9767 -0.8907 34 1 5.6670 2.6516 1.0817 35 1 5.8240 2.5115 -0.6866 36 1 7.4454 4.4269 1.2511 37 1 7.7018 3.9649 -0.4487 38 1 7.9130 5.6441 -2.1774 39 1 8.5320 7.9554 -2.7323 40 1 9.9318 10.9198 1.7903 41 1 7.9120 9.0738 1.3823 42 1 7.2888 6.7548 1.8988 43 1 5.5439 6.1262 -1.2492 44 1 5.7522 4.5526 -2.0554 45 1 3.2763 5.4894 -0.5335 46 1 3.4229 5.3116 -2.2993 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528725651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:56 Heat of formation + Delta-G solvation = -90.186862 kcal Electronic energy + Delta-G solvation = -24739.409083 eV Core-core repulsion = 21206.804708 eV Total energy + Delta-G solvation = -3532.604375 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.91226 -39.52763 -38.69039 -36.87361 -35.34444 -33.57140 -32.24301 -31.66285 -31.11043 -29.67514 -27.91795 -25.96673 -24.94238 -23.64129 -23.31291 -22.87309 -21.61814 -21.14218 -19.21818 -17.84673 -17.63471 -17.39949 -17.15273 -16.57050 -16.30303 -16.08665 -15.92540 -15.76666 -15.27320 -14.98856 -14.94123 -14.42199 -14.20946 -14.09851 -13.80118 -13.39494 -13.35657 -13.16131 -13.03628 -12.76675 -12.69504 -12.52071 -12.40246 -12.23678 -12.12058 -12.04092 -11.90151 -11.50353 -11.40170 -11.22449 -11.01160 -10.61539 -10.54727 -9.42646 -9.33431 -9.10458 -8.64271 -6.33224 0.92902 1.14743 1.37612 1.50308 1.50553 2.20210 2.50590 2.69954 2.75477 3.13442 3.76483 3.93090 3.95050 4.03582 4.07865 4.17740 4.20091 4.25872 4.32572 4.42011 4.44765 4.50339 4.51898 4.53720 4.61068 4.62318 4.62605 4.81522 4.83197 4.91317 5.00393 5.02706 5.06016 5.07347 5.16453 5.28631 5.38520 5.45823 5.70723 5.89475 5.99069 6.10806 6.12129 6.17590 6.27141 6.32326 6.38986 6.71181 6.94479 7.03953 8.32614 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.035461 B = 0.002442 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.406706 B =11464.539675 C =11628.718391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.409 6.409 4 C 0.076 3.924 5 C 0.095 3.905 6 H 0.063 0.937 7 C 0.030 3.970 8 N -0.540 5.540 9 C 0.126 3.874 10 C -0.201 4.201 11 C -0.079 4.079 12 C -0.242 4.242 13 C 0.081 3.919 14 C -0.501 4.501 15 H 0.074 0.926 16 C 0.034 3.966 17 N -0.824 5.824 18 Si 0.981 3.019 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.192 4.192 23 C -0.084 4.084 24 C 0.026 3.974 25 C 0.068 3.932 26 O -0.391 6.391 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.288 0.712 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.078 0.922 44 H 0.035 0.965 45 H 0.052 0.948 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.197 -16.987 -0.035 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.329 6.329 4 C -0.001 4.001 5 C 0.036 3.964 6 H 0.081 0.919 7 C -0.099 4.099 8 N -0.266 5.266 9 C 0.000 4.000 10 C -0.203 4.203 11 C -0.098 4.098 12 C -0.261 4.261 13 C 0.079 3.921 14 C -0.530 4.530 15 H 0.092 0.908 16 C -0.180 4.180 17 N -0.450 5.450 18 Si 0.802 3.198 19 H -0.188 1.188 20 H -0.192 1.192 21 H -0.183 1.183 22 C -0.211 4.211 23 C -0.103 4.103 24 C -0.102 4.102 25 C -0.009 4.009 26 O -0.310 6.310 27 H 0.111 0.889 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.123 0.877 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.126 0.874 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.096 0.904 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.529 -16.648 0.429 20.255 hybrid contribution 1.076 0.716 -0.523 1.394 sum -10.452 -15.932 -0.094 19.055 Atomic orbital electron populations 1.21767 0.93178 1.03338 1.02468 1.22680 0.96256 0.82733 1.01025 1.87919 1.21201 1.28186 1.95615 1.22466 0.81700 0.93756 1.02185 1.22176 0.93082 0.93574 0.87524 0.91914 1.22701 0.95081 0.88973 1.03100 1.62305 1.15128 1.14990 1.34133 1.20709 0.85965 0.92501 1.00861 1.19199 1.12217 0.95371 0.93473 1.20619 0.98597 0.95122 0.95464 1.21117 1.12577 0.93836 0.98589 1.17963 0.88632 0.93287 0.92262 1.19839 1.39586 0.96784 0.96799 0.90828 1.26752 0.91579 1.05890 0.93822 1.69879 1.28573 1.39472 1.07072 0.85215 0.78932 0.75948 0.79686 1.18757 1.19214 1.18265 1.21266 1.06291 0.96077 0.97488 1.20720 0.98687 0.93026 0.97827 1.22713 0.96166 1.01103 0.90260 1.22703 0.93160 0.82228 1.02809 1.87980 1.79555 1.24492 1.38981 0.88922 0.92381 0.92814 0.91917 0.92744 0.89237 0.92183 0.87734 0.93699 0.90121 0.94460 0.87412 0.88761 0.90166 0.88387 0.87882 0.90411 0.94691 0.92936 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 71.98 0.74 -1.27 16 2 C 0.05 0.76 6.66 71.98 0.48 1.24 16 3 O -0.41 -9.35 10.31 -144.68 -1.49 -10.84 16 4 C 0.08 1.48 5.60 71.98 0.40 1.88 16 5 C 0.09 2.32 3.09 30.63 0.09 2.41 16 6 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 7 C 0.03 0.70 4.91 86.32 0.42 1.12 16 8 N -0.54 -16.40 4.87 -899.77 -4.38 -20.78 16 9 C 0.13 4.07 5.42 85.55 0.46 4.54 16 10 C -0.20 -8.24 4.16 -19.68 -0.08 -8.32 16 11 C -0.08 -3.38 7.84 22.22 0.17 -3.20 16 12 C -0.24 -11.83 9.80 22.73 0.22 -11.60 16 13 C 0.08 4.40 5.58 -21.29 -0.12 4.28 16 14 C -0.50 -27.32 9.06 23.46 0.21 -27.11 16 15 H 0.07 3.89 7.91 -2.91 -0.02 3.87 16 16 C 0.03 1.76 5.14 85.26 0.44 2.20 16 17 N -0.82 -43.54 10.95 21.83 0.24 -43.30 16 18 Si 0.98 38.65 29.59 68.60 2.03 40.68 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 20 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 22 C -0.19 -10.15 8.70 22.73 0.20 -9.95 16 23 C -0.08 -3.85 9.67 22.22 0.21 -3.64 16 24 C 0.03 0.81 4.65 86.31 0.40 1.21 16 25 C 0.07 1.92 7.01 72.01 0.50 2.42 16 26 O -0.39 -11.36 10.44 -144.68 -1.51 -12.87 16 27 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 2.45 8.08 -2.39 -0.02 2.43 16 37 H 0.04 1.13 8.02 -2.39 -0.02 1.11 16 38 H 0.11 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 40 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 41 H 0.10 5.48 6.16 -2.91 -0.02 5.46 16 42 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 43 H 0.08 2.87 5.93 -2.38 -0.01 2.85 16 44 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 46 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -61.91 369.44 0.59 -61.31 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 0.94 Total: 29.59 kcal Atomic # 6 Polarization: -48.57 SS G_CDS: 4.77 Total: -43.80 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -4.14 Total: -64.08 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -3.00 Total: -23.71 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -61.91 0.59 -61.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528725651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.873 kcal (2) G-P(sol) polarization free energy of solvation -61.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds