Wall clock time and date at job start Tue Mar 31 2020 08:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46897 * 109.47056 * 2 1 4 4 C 1.46899 * 111.00334 * 196.06643 * 3 2 1 5 5 C 1.50691 * 109.47084 * 66.04751 * 4 3 2 6 6 H 1.08005 * 120.00143 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00198 * 180.02562 * 5 4 3 8 8 N 1.31507 * 120.00043 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00133 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47303 * 179.97438 * 9 7 5 11 11 H 1.48508 * 109.47370 * 300.00098 * 9 7 5 12 12 H 1.48505 * 109.47401 * 59.99994 * 9 7 5 13 13 C 1.46900 * 110.99680 * 72.11762 * 3 2 1 14 14 C 1.50699 * 109.47184 * 199.61437 * 13 3 2 15 15 C 1.37955 * 119.85164 * 254.51675 * 14 13 3 16 16 C 1.39231 * 120.30965 * 179.97438 * 15 14 13 17 17 C 1.38896 * 118.96942 * 359.73128 * 16 15 14 18 18 C 1.37690 * 120.84183 * 0.41002 * 17 16 15 19 19 C 1.38680 * 119.85668 * 74.24186 * 14 13 3 20 20 O 1.35987 * 120.17101 * 0.13729 * 19 14 13 21 21 C 1.42899 * 116.99737 * 180.02562 * 20 19 14 22 22 C 1.51658 * 107.04358 * 180.56293 * 17 16 15 23 23 C 1.54701 * 101.94075 * 15.37939 * 22 17 16 24 24 H 1.09000 * 110.74586 * 93.01610 * 23 22 17 25 25 C 1.52995 * 110.74712 * 216.36023 * 23 22 17 26 26 O 1.36246 * 129.82070 * 179.07957 * 16 15 14 27 27 H 1.08995 * 109.47554 * 60.73376 * 1 2 3 28 28 H 1.09006 * 109.47271 * 180.73318 * 1 2 3 29 29 H 1.09002 * 109.47490 * 300.72951 * 1 2 3 30 30 H 1.09007 * 109.46998 * 240.00549 * 2 1 3 31 31 H 1.08997 * 109.47679 * 120.00456 * 2 1 3 32 32 H 1.09000 * 109.47042 * 306.05229 * 4 3 2 33 33 H 1.08999 * 109.47330 * 186.05453 * 4 3 2 34 34 H 0.97005 * 120.00381 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.47104 * 319.60859 * 13 3 2 36 36 H 1.08997 * 109.47973 * 79.60908 * 13 3 2 37 37 H 1.07994 * 119.84847 * 0.02562 * 15 14 13 38 38 H 1.08001 * 120.03414 * 179.72510 * 18 17 16 39 39 H 1.08994 * 109.47292 * 300.00284 * 21 20 19 40 40 H 1.09006 * 109.46864 * 60.00442 * 21 20 19 41 41 H 1.08995 * 109.47066 * 179.97438 * 21 20 19 42 42 H 1.09003 * 110.93350 * 133.54313 * 22 17 16 43 43 H 1.09000 * 110.93650 * 257.17865 * 22 17 16 44 44 H 1.08999 * 109.47162 * 60.00330 * 25 23 22 45 45 H 1.09003 * 109.47390 * 179.97438 * 25 23 22 46 46 H 1.09006 * 109.47458 * 300.00215 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4375 1.4421 -0.3795 5 6 3.5914 1.0075 -1.8142 6 1 2.7227 0.7182 -2.3870 7 6 4.8413 0.9792 -2.3957 8 7 5.8992 1.3310 -1.6982 9 14 5.0319 0.4412 -4.1744 10 1 6.4654 0.4988 -4.5581 11 1 4.5336 -0.9494 -4.3271 12 1 4.2483 1.3470 -5.0523 13 6 1.7980 2.0216 1.3052 14 6 1.8496 3.5196 1.1487 15 6 2.9533 4.2186 1.5917 16 6 3.0113 5.6027 1.4514 17 6 1.9451 6.2636 0.8549 18 6 0.8411 5.5687 0.4145 19 6 0.7899 4.1886 0.5549 20 8 -0.2957 3.4967 0.1166 21 6 -1.3478 4.2537 -0.4851 22 6 2.2952 7.7390 0.8290 23 6 3.8159 7.7122 1.1117 24 1 4.3816 7.6976 0.1801 25 6 4.2271 8.9038 1.9787 26 8 3.9846 6.4780 1.8293 27 1 -0.3634 0.5024 -0.8964 28 1 -0.3634 -1.0276 0.0132 29 1 -0.3634 0.5251 0.8834 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 4.0132 0.7778 0.2650 33 1 3.8027 2.4630 -0.2679 34 1 6.7785 1.3114 -2.1074 35 1 0.8208 1.7300 1.6905 36 1 2.5732 1.7022 2.0017 37 1 3.7766 3.6899 2.0486 38 1 0.0175 6.0963 -0.0434 39 1 -1.7322 4.9769 0.2341 40 1 -0.9632 4.7795 -1.3590 41 1 -2.1503 3.5820 -0.7898 42 1 2.0885 8.1711 -0.1501 43 1 1.7625 8.2795 1.6114 44 1 3.6922 8.8645 2.9276 45 1 5.3004 8.8643 2.1652 46 1 3.9818 9.8314 1.4614 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000536631802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:13 Heat of formation + Delta-G solvation = -40.525100 kcal Electronic energy + Delta-G solvation = -25955.658441 eV Core-core repulsion = 22425.207561 eV Total energy + Delta-G solvation = -3530.450880 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -40.96339 -39.16100 -37.06939 -35.73936 -33.06347 -32.56843 -31.61806 -29.68032 -29.10726 -28.03900 -27.20732 -25.76214 -23.84374 -22.29969 -21.92662 -21.57330 -20.93199 -19.59927 -17.48422 -16.99545 -16.62252 -16.31082 -15.57471 -15.30874 -14.82944 -14.40114 -14.28659 -14.08209 -13.84911 -13.69599 -13.39266 -13.03974 -12.96201 -12.59140 -12.47788 -12.16672 -12.04996 -12.01502 -11.75564 -11.43472 -11.32692 -11.29989 -11.11230 -10.94417 -10.91144 -10.66685 -10.43473 -10.28921 -10.08124 -9.87741 -9.67478 -9.08813 -8.47151 -8.33873 -7.28161 -7.07830 -5.93694 -3.93939 1.55323 1.79085 3.37801 3.39261 3.41554 3.44759 3.68982 3.99359 4.47108 4.49972 4.56420 4.94736 5.03560 5.09175 5.14305 5.24513 5.34418 5.35885 5.38917 5.41940 5.50735 5.56685 5.64281 5.71461 5.80477 5.84046 5.92192 5.95731 5.99448 6.12129 6.17503 6.21065 6.26009 6.44629 6.53086 6.58381 6.68985 6.85050 6.92836 6.98301 7.41166 7.45083 7.46855 7.80880 7.90905 8.22767 8.36116 8.67596 9.13596 9.69150 11.17163 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.005174 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.610461 B = 5410.800213 C = 6903.460365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.058 3.942 3 N -0.524 5.524 4 C 0.192 3.808 5 C -0.503 4.503 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.289 1.289 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.100 3.900 14 C -0.055 4.055 15 C -0.086 4.086 16 C 0.068 3.932 17 C -0.147 4.147 18 C -0.166 4.166 19 C 0.127 3.873 20 O -0.292 6.292 21 C 0.029 3.971 22 C -0.102 4.102 23 C 0.076 3.924 24 H 0.085 0.915 25 C -0.147 4.147 26 O -0.304 6.304 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.015 0.985 32 H -0.012 1.012 33 H 0.033 0.967 34 H 0.260 0.740 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.046 0.954 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.090 11.876 6.828 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.070 4.070 3 N -0.249 5.249 4 C 0.067 3.933 5 C -0.542 4.542 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.203 1.203 13 C -0.028 4.028 14 C -0.056 4.056 15 C -0.105 4.105 16 C 0.023 3.977 17 C -0.148 4.148 18 C -0.185 4.185 19 C 0.081 3.919 20 O -0.205 6.205 21 C -0.067 4.067 22 C -0.139 4.139 23 C 0.020 3.980 24 H 0.102 0.898 25 C -0.204 4.204 26 O -0.219 6.219 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.033 0.967 32 H 0.006 0.994 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.150 0.850 38 H 0.142 0.858 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.011 11.913 6.618 17.520 hybrid contribution 0.617 -0.266 -0.708 0.975 sum -10.395 11.647 5.911 16.692 Atomic orbital electron populations 1.21760 0.96549 0.99527 1.01889 1.21938 0.94193 0.90169 1.00669 1.62083 1.22717 1.15644 1.24435 1.19755 0.80977 0.96994 0.95611 1.21128 0.92676 1.43684 0.96671 0.92015 1.24966 0.95915 0.95794 0.97898 1.69953 0.98563 1.48736 1.36570 0.86619 0.76754 0.79117 0.85236 1.21446 1.20312 1.20315 1.20830 1.00454 0.89061 0.92444 1.18863 0.91432 0.96088 0.99254 1.19985 0.98207 0.89536 1.02763 1.19253 0.88354 0.90912 0.99176 1.20359 0.95322 0.94888 1.04207 1.20187 0.99202 0.92726 1.06384 1.18438 0.88239 0.89165 0.96028 1.86224 1.25836 1.34696 1.73722 1.22957 0.89535 0.97188 0.97014 1.21807 0.95582 0.93364 1.03177 1.23298 0.95301 0.84054 0.95378 0.89763 1.21857 1.02727 0.95690 1.00145 1.86835 1.50204 1.23356 1.61482 0.92284 0.93906 0.93500 0.89767 0.96699 0.99442 0.94867 0.93020 0.90629 0.94923 0.85028 0.85770 0.93561 0.93040 0.88716 0.89513 0.89511 0.91587 0.91388 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.99 37.15 0.37 -1.93 16 2 C 0.06 1.17 5.52 -3.83 -0.02 1.15 16 3 N -0.52 -11.70 4.37 -237.53 -1.04 -12.74 16 4 C 0.19 5.14 4.55 -4.98 -0.02 5.12 16 5 C -0.50 -14.48 8.28 -34.44 -0.29 -14.76 16 6 H 0.06 1.76 7.26 -52.48 -0.38 1.38 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 9 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.10 1.94 4.55 -4.98 -0.02 1.92 16 14 C -0.06 -1.05 4.81 -104.56 -0.50 -1.55 16 15 C -0.09 -1.63 9.02 -39.32 -0.35 -1.98 16 16 C 0.07 1.21 7.03 -38.97 -0.27 0.93 16 17 C -0.15 -2.31 6.27 -104.11 -0.65 -2.96 16 18 C -0.17 -2.58 9.03 -39.57 -0.36 -2.94 16 19 C 0.13 2.23 6.66 -39.20 -0.26 1.97 16 20 O -0.29 -4.79 9.84 -19.70 -0.19 -4.98 16 21 C 0.03 0.33 9.82 101.05 0.99 1.32 16 22 C -0.10 -1.21 6.64 -26.52 -0.18 -1.39 16 23 C 0.08 0.96 4.26 -25.84 -0.11 0.85 16 24 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 25 C -0.15 -1.35 9.58 37.16 0.36 -1.00 16 26 O -0.30 -5.11 10.81 -20.52 -0.22 -5.34 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.73 6.52 -51.93 -0.34 0.39 16 30 H 0.08 1.86 6.59 -51.93 -0.34 1.51 16 31 H 0.01 0.29 8.05 -51.93 -0.42 -0.13 16 32 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 33 H 0.03 0.96 6.89 -51.93 -0.36 0.60 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.08 1.33 6.12 -51.93 -0.32 1.01 16 36 H 0.03 0.63 7.79 -51.93 -0.40 0.23 16 37 H 0.13 2.48 7.98 -52.49 -0.42 2.06 16 38 H 0.12 1.56 6.32 -52.49 -0.33 1.23 16 39 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 40 H 0.05 0.58 7.68 -51.93 -0.40 0.18 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.09 0.88 7.93 -51.93 -0.41 0.46 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -32.83 369.01 -9.05 -41.88 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -7.46 Total: -1.19 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -1.42 Total: -13.73 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: -0.30 Total: -39.35 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.42 Total: -10.32 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.83 -9.05 -41.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536631802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.359 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds