Wall clock time and date at job start Tue Mar 31 2020 09:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.46958 * 2 1 4 4 C 1.42903 * 114.00086 * 180.02562 * 3 2 1 5 5 H 1.09004 * 115.56002 * 355.68270 * 4 3 2 6 6 C 1.52994 * 117.50127 * 141.37268 * 4 3 2 7 7 C 1.52997 * 117.50098 * 209.99846 * 4 3 2 8 8 H 1.08994 * 117.50259 * 144.98980 * 7 4 3 9 9 N 1.46904 * 117.49552 * 359.97438 * 7 4 3 10 10 C 1.46899 * 111.00029 * 155.00195 * 9 7 4 11 11 C 1.50703 * 109.47107 * 179.97438 * 10 9 7 12 12 C 1.38285 * 119.97417 * 90.00005 * 11 10 9 13 13 C 1.38244 * 120.11514 * 179.97438 * 12 11 10 14 14 C 1.38160 * 120.05180 * 0.04170 * 13 12 11 15 15 C 1.38715 * 119.94886 * 359.97438 * 14 13 12 16 16 O 1.35896 * 120.05846 * 180.02562 * 15 14 13 17 17 C 1.42901 * 117.00044 * 359.97438 * 16 15 14 18 18 C 1.53000 * 109.46988 * 179.97438 * 17 16 15 19 19 C 1.50707 * 109.46880 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99966 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99898 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00035 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99919 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47038 * 90.00139 * 23 21 19 25 25 H 1.48497 * 109.46975 * 209.99867 * 23 21 19 26 26 H 1.48497 * 109.47308 * 329.99972 * 23 21 19 27 27 C 1.38123 * 119.97033 * 269.72302 * 11 10 9 28 28 H 1.09000 * 109.47215 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47090 * 299.99804 * 1 2 3 30 30 H 1.08999 * 109.47129 * 60.00702 * 1 2 3 31 31 H 1.09004 * 109.47188 * 239.99537 * 2 1 3 32 32 H 1.08997 * 109.47236 * 119.99835 * 2 1 3 33 33 H 1.09003 * 117.50041 * 0.02562 * 6 4 3 34 34 H 1.09002 * 117.49793 * 214.97685 * 6 4 3 35 35 H 1.00902 * 111.00190 * 31.03896 * 9 7 4 36 36 H 1.09002 * 109.47043 * 299.99792 * 10 9 7 37 37 H 1.09001 * 109.47354 * 59.99854 * 10 9 7 38 38 H 1.08000 * 119.94351 * 359.97438 * 12 11 10 39 39 H 1.07996 * 119.97375 * 180.02562 * 13 12 11 40 40 H 1.08003 * 120.02799 * 180.02562 * 14 13 12 41 41 H 1.08997 * 109.47585 * 300.00658 * 17 16 15 42 42 H 1.09006 * 109.46794 * 60.00162 * 17 16 15 43 43 H 1.08999 * 109.47691 * 300.00224 * 18 17 16 44 44 H 1.08999 * 109.47470 * 60.00669 * 18 17 16 45 45 H 0.97003 * 119.99848 * 180.02562 * 22 21 19 46 46 H 1.08001 * 120.03067 * 359.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9772 0.5198 0.0731 6 6 4.0510 2.5730 -0.8478 7 6 4.0425 2.6875 0.6779 8 1 4.9910 2.5546 1.1982 9 7 3.1204 3.6600 1.2795 10 6 3.7791 4.4154 2.3534 11 6 2.8046 5.4012 2.9448 12 6 2.0067 5.0289 4.0111 13 6 1.1122 5.9311 4.5563 14 6 1.0127 7.2071 4.0360 15 6 1.8117 7.5830 2.9662 16 8 1.7161 8.8377 2.4530 17 6 0.7709 9.7182 3.0640 18 6 0.8063 11.0745 2.3569 19 6 -0.1901 12.0033 3.0017 20 1 -0.7884 11.6606 3.8329 21 6 -0.3379 13.2906 2.5303 22 7 0.3903 13.7078 1.5177 23 14 -1.5724 14.4420 3.3300 24 1 -0.9128 15.1866 4.4326 25 1 -2.0803 15.4031 2.3182 26 1 -2.7056 13.6519 3.8748 27 6 2.7133 6.6776 2.4250 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3724 3.2193 -1.4045 34 1 5.0053 2.3647 -1.3316 35 1 2.2851 3.2055 1.6168 36 1 4.1154 3.7268 3.1286 37 1 4.6366 4.9519 1.9471 38 1 2.0825 4.0317 4.4188 39 1 0.4904 5.6380 5.3893 40 1 0.3140 7.9117 4.4624 41 1 -0.2287 9.2914 2.9825 42 1 1.0247 9.8505 4.1158 43 1 1.8060 11.5011 2.4389 44 1 0.5527 10.9427 1.3050 45 1 0.2866 14.6135 1.1864 46 1 3.3401 6.9695 1.5954 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567065417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:48 Heat of formation + Delta-G solvation = -60.572888 kcal Electronic energy + Delta-G solvation = -23557.231996 eV Core-core repulsion = 20025.911779 eV Total energy + Delta-G solvation = -3531.320217 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.08919 -39.83785 -38.76556 -37.09009 -35.49726 -34.57822 -32.59178 -31.79787 -31.25286 -30.43824 -27.13111 -26.06491 -23.77859 -23.55579 -23.28382 -22.96433 -21.99601 -21.54426 -19.13648 -18.17949 -18.06488 -17.09015 -16.94692 -16.89017 -16.78936 -16.44084 -16.39552 -15.70986 -15.45333 -14.90104 -14.52935 -14.34480 -14.33831 -14.19198 -13.74225 -13.57190 -13.51385 -13.18263 -13.02767 -12.94945 -12.68252 -12.59442 -12.56982 -12.43336 -12.10650 -11.85960 -11.76239 -11.62051 -11.58284 -11.55872 -11.38133 -10.62996 -10.08916 -9.80400 -9.21540 -9.06852 -8.27290 -6.41332 0.33725 0.53143 1.40201 1.42928 1.54101 2.26778 2.47947 2.51328 2.75739 2.93310 3.06822 3.29464 3.83997 3.91566 3.98283 4.08003 4.12587 4.18780 4.22862 4.25454 4.26421 4.32740 4.40688 4.43658 4.49259 4.51868 4.55799 4.66293 4.72190 4.84587 4.86625 4.96147 5.03630 5.10232 5.11649 5.28946 5.30416 5.43823 5.45185 5.51549 5.60327 5.67962 5.89780 6.06192 6.09873 6.32835 6.46503 6.57382 6.73310 7.28706 8.85936 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.002109 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.187547 B =13271.379666 C =13328.175795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.377 6.377 4 C 0.012 3.988 5 H 0.136 0.864 6 C -0.186 4.186 7 C 0.013 3.987 8 H 0.126 0.874 9 N -0.666 5.666 10 C 0.110 3.890 11 C -0.047 4.047 12 C -0.152 4.152 13 C -0.077 4.077 14 C -0.222 4.222 15 C 0.105 3.895 16 O -0.343 6.343 17 C 0.085 3.915 18 C 0.028 3.972 19 C -0.546 4.546 20 H 0.071 0.929 21 C 0.000 4.000 22 N -0.931 5.931 23 Si 0.978 3.022 24 H -0.269 1.269 25 H -0.281 1.281 26 H -0.259 1.259 27 C -0.153 4.153 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.349 0.651 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.127 0.873 41 H 0.058 0.942 42 H 0.061 0.939 43 H -0.002 1.002 44 H -0.003 1.003 45 H 0.267 0.733 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.121 -31.781 2.355 32.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.296 6.296 4 C -0.047 4.047 5 H 0.154 0.846 6 C -0.225 4.225 7 C -0.097 4.097 8 H 0.144 0.856 9 N -0.298 5.298 10 C -0.018 4.018 11 C -0.048 4.048 12 C -0.170 4.170 13 C -0.095 4.095 14 C -0.241 4.241 15 C 0.060 3.940 16 O -0.258 6.258 17 C 0.011 3.989 18 C -0.009 4.009 19 C -0.584 4.584 20 H 0.089 0.911 21 C -0.199 4.199 22 N -0.570 5.570 23 Si 0.801 3.199 24 H -0.194 1.194 25 H -0.206 1.206 26 H -0.183 1.183 27 C -0.172 4.172 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.170 0.830 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.168 0.832 39 H 0.170 0.830 40 H 0.145 0.855 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.017 0.983 44 H 0.015 0.985 45 H 0.076 0.924 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.234 -30.912 1.615 31.575 hybrid contribution -0.508 0.533 0.569 0.930 sum 5.726 -30.379 2.184 30.991 Atomic orbital electron populations 1.21782 0.93514 1.03319 1.02420 1.22701 0.95800 0.82547 1.01148 1.87854 1.19426 1.28202 1.94149 1.23248 0.82109 0.94700 1.04667 0.84629 1.23668 1.02783 1.01738 0.94313 1.23042 0.97584 0.93937 0.95179 0.85635 1.59932 1.08064 1.28017 1.33739 1.20881 0.94540 0.93972 0.92414 1.19691 0.97228 0.92747 0.95105 1.21211 0.97469 1.00827 0.97535 1.21224 0.97545 0.91579 0.99176 1.21507 1.03371 0.99889 0.99356 1.19530 0.95966 0.84751 0.93802 1.86085 1.60028 1.21272 1.58417 1.22853 0.90187 0.89167 0.96707 1.18972 0.96573 0.90024 0.95373 1.21391 1.22011 0.97552 1.17408 0.91073 1.26083 0.98279 1.00095 0.95432 1.70131 1.41679 1.18608 1.26615 0.85252 0.78618 0.77944 0.78044 1.19449 1.20623 1.18297 1.20408 1.00880 0.93427 1.02481 0.88982 0.92528 0.92924 0.92299 0.91897 0.90285 0.86126 0.82995 0.91610 0.90082 0.83167 0.82987 0.85511 0.92356 0.92119 0.98332 0.98486 0.92423 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 71.98 0.74 -1.05 16 2 C 0.05 0.65 6.53 71.98 0.47 1.12 16 3 O -0.38 -6.94 9.80 -148.98 -1.46 -8.40 16 4 C 0.01 0.17 6.42 30.59 0.20 0.36 16 5 H 0.14 1.10 7.93 -2.38 -0.02 1.08 16 6 C -0.19 -3.03 10.41 30.59 0.32 -2.72 16 7 C 0.01 0.21 6.26 44.91 0.28 0.49 16 8 H 0.13 1.39 7.90 -2.39 -0.02 1.38 16 9 N -0.67 -13.71 6.67 -495.58 -3.30 -17.01 16 10 C 0.11 2.11 5.66 85.56 0.48 2.59 16 11 C -0.05 -1.18 5.39 -19.88 -0.11 -1.29 16 12 C -0.15 -3.33 9.70 22.28 0.22 -3.11 16 13 C -0.08 -1.89 10.04 22.25 0.22 -1.66 16 14 C -0.22 -7.12 9.04 22.37 0.20 -6.91 16 15 C 0.10 3.94 6.69 22.51 0.15 4.09 16 16 O -0.34 -15.58 10.14 -92.38 -0.94 -16.51 16 17 C 0.09 3.92 4.68 71.98 0.34 4.25 16 18 C 0.03 1.57 5.34 29.85 0.16 1.73 16 19 C -0.55 -31.55 9.11 25.60 0.23 -31.31 16 20 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 21 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 22 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 23 Si 0.98 44.21 29.54 68.60 2.03 46.24 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 26 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 27 C -0.15 -5.01 9.64 22.37 0.22 -4.80 16 28 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.35 7.43 8.05 -89.69 -0.72 6.71 16 36 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 37 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 38 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 39 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 40 H 0.13 4.02 6.30 -2.91 -0.02 4.00 16 41 H 0.06 2.54 7.66 -2.39 -0.02 2.52 16 42 H 0.06 2.61 7.66 -2.38 -0.02 2.59 16 43 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 45 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 46 H 0.12 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -71.41 386.55 1.42 -69.99 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.23 Total: 20.95 kcal Atomic # 6 Polarization: -42.37 SS G_CDS: 4.58 Total: -37.78 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -3.02 Total: -74.48 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -2.40 Total: -24.91 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -71.41 1.42 -69.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567065417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.416 kcal (2) G-P(sol) polarization free energy of solvation -71.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds