Wall clock time and date at job start Tue Mar 31 2020 09:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47318 * 2 1 4 4 C 1.42903 * 114.00075 * 179.97438 * 3 2 1 5 5 H 1.08996 * 115.54962 * 355.67039 * 4 3 2 6 6 C 1.53000 * 117.51808 * 141.36906 * 4 3 2 7 7 C 1.52995 * 117.49809 * 209.99642 * 4 3 2 8 8 H 1.09000 * 117.50272 * 0.02562 * 7 4 3 9 9 N 1.46904 * 117.49750 * 145.00116 * 7 4 3 10 10 C 1.46899 * 111.00029 * 205.00179 * 9 7 4 11 11 C 1.50703 * 109.47107 * 179.97438 * 10 9 7 12 12 C 1.38285 * 119.97192 * 269.72249 * 11 10 9 13 13 C 1.38241 * 120.11346 * 179.76704 * 12 11 10 14 14 C 1.38164 * 120.05382 * 0.50891 * 13 12 11 15 15 C 1.38715 * 119.94436 * 359.74559 * 14 13 12 16 16 O 1.35904 * 120.05603 * 180.02562 * 15 14 13 17 17 C 1.42897 * 117.00032 * 359.97438 * 16 15 14 18 18 C 1.52997 * 109.47189 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47169 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00031 * 359.97438 * 19 18 17 21 21 C 1.37872 * 119.99928 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00250 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00298 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46647 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47129 * 119.99681 * 23 21 19 26 26 H 1.48493 * 109.47142 * 240.00365 * 23 21 19 27 27 C 1.38119 * 119.97319 * 89.99993 * 11 10 9 28 28 H 1.08993 * 109.47188 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47295 * 300.00663 * 1 2 3 30 30 H 1.09010 * 109.46584 * 60.00548 * 1 2 3 31 31 H 1.09004 * 109.47579 * 239.99372 * 2 1 3 32 32 H 1.09003 * 109.46814 * 120.00088 * 2 1 3 33 33 H 1.09003 * 117.50019 * 359.97438 * 6 4 3 34 34 H 1.08996 * 117.50040 * 214.97475 * 6 4 3 35 35 H 1.00902 * 111.00190 * 81.03879 * 9 7 4 36 36 H 1.09002 * 109.47043 * 299.99792 * 10 9 7 37 37 H 1.09001 * 109.47354 * 59.99854 * 10 9 7 38 38 H 1.08009 * 119.94314 * 0.02562 * 12 11 10 39 39 H 1.08004 * 119.97435 * 180.25862 * 13 12 11 40 40 H 1.08007 * 120.02900 * 179.72647 * 14 13 12 41 41 H 1.09003 * 109.47130 * 300.00356 * 17 16 15 42 42 H 1.09005 * 109.47448 * 59.99694 * 17 16 15 43 43 H 1.09002 * 109.46977 * 299.99739 * 18 17 16 44 44 H 1.08997 * 109.47049 * 59.99654 * 18 17 16 45 45 H 0.96996 * 120.00418 * 180.02562 * 22 21 19 46 46 H 1.08002 * 120.02570 * 359.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9769 0.5196 0.0752 6 6 4.0523 2.5724 -0.8464 7 6 4.0421 2.6875 0.6791 8 1 3.3576 3.4089 1.1255 9 7 5.3199 2.5085 1.3814 10 6 5.4889 3.5201 2.4331 11 6 6.8075 3.3046 3.1302 12 6 6.8761 2.4821 4.2396 13 6 8.0850 2.2785 4.8785 14 6 9.2262 2.9051 4.4159 15 6 9.1591 3.7349 3.3063 16 8 10.2803 4.3520 2.8491 17 6 11.4943 4.1017 3.5599 18 6 12.6387 4.8767 2.9037 19 6 13.9192 4.6122 3.6530 20 1 13.9169 3.9571 4.5116 21 6 15.0933 5.2072 3.2430 22 7 15.0960 6.0053 2.1977 23 14 16.6805 4.8799 4.1721 24 1 16.4111 3.9533 5.3008 25 1 17.6736 4.2660 3.2546 26 1 17.2184 6.1597 4.6993 27 6 7.9454 3.9334 2.6638 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.3745 3.2182 -1.4047 34 1 5.0071 2.3638 -1.3291 35 1 6.0938 2.5268 0.7342 36 1 5.4716 4.5145 1.9869 37 1 4.6776 3.4320 3.1557 38 1 5.9843 1.9945 4.6052 39 1 8.1368 1.6323 5.7423 40 1 10.1697 2.7493 4.9180 41 1 11.3830 4.4257 4.5947 42 1 11.7165 3.0348 3.5353 43 1 12.7502 4.5530 1.8688 44 1 12.4163 5.9435 2.9288 45 1 15.9221 6.4237 1.9090 46 1 7.8905 4.5790 1.7997 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567065418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:53 Heat of formation + Delta-G solvation = -43.286512 kcal Electronic energy + Delta-G solvation = -23202.687783 eV Core-core repulsion = 19672.117159 eV Total energy + Delta-G solvation = -3530.570624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.86260 -39.11040 -37.59763 -36.50829 -33.79915 -33.35480 -31.27766 -30.85750 -30.05795 -29.10990 -25.54460 -24.71747 -23.25328 -22.45540 -22.27900 -21.70918 -21.51755 -20.16512 -17.76592 -17.40984 -16.33344 -16.00958 -15.88357 -15.68520 -15.56262 -15.35920 -15.07905 -14.72654 -14.44443 -14.18755 -13.27856 -13.26151 -13.05091 -12.78899 -12.74118 -12.66594 -12.48930 -12.34643 -12.16473 -11.58851 -11.44376 -11.38459 -11.34853 -11.21024 -11.00672 -10.89537 -10.71281 -10.47591 -9.87462 -9.67303 -9.58428 -9.30081 -8.82354 -8.47166 -8.44047 -7.84950 -6.11945 -4.16631 1.40562 1.68309 2.99926 3.25497 3.32612 3.36186 3.51251 3.76700 3.86243 4.20586 4.39898 4.54343 4.58877 4.70024 4.71481 4.77881 4.89470 4.97666 5.01230 5.15434 5.20267 5.24633 5.28034 5.34830 5.43624 5.48786 5.49646 5.50818 5.58895 5.65054 5.71752 5.80699 6.02020 6.05078 6.16612 6.53001 6.55067 6.63269 6.71095 6.72223 6.93648 6.97654 7.05397 7.49202 7.62208 7.79928 8.04647 8.22273 8.89186 9.47922 10.99639 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.030333 B = 0.001857 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.854663 B =15073.716099 C =15567.673842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.360 6.360 4 C 0.028 3.972 5 H 0.113 0.887 6 C -0.207 4.207 7 C 0.026 3.974 8 H 0.115 0.885 9 N -0.654 5.654 10 C 0.105 3.895 11 C -0.054 4.054 12 C -0.148 4.148 13 C -0.082 4.082 14 C -0.209 4.209 15 C 0.145 3.855 16 O -0.316 6.316 17 C 0.065 3.935 18 C 0.025 3.975 19 C -0.527 4.527 20 H 0.059 0.941 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.156 4.156 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.349 0.651 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.130 0.870 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.263 0.737 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.451 -10.256 -2.255 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.278 6.278 4 C -0.031 4.031 5 H 0.131 0.869 6 C -0.247 4.247 7 C -0.085 4.085 8 H 0.132 0.868 9 N -0.285 5.285 10 C -0.023 4.023 11 C -0.054 4.054 12 C -0.167 4.167 13 C -0.100 4.100 14 C -0.228 4.228 15 C 0.098 3.902 16 O -0.229 6.229 17 C -0.009 4.009 18 C -0.012 4.012 19 C -0.565 4.565 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.175 4.175 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.169 0.831 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -26.661 -10.319 -2.086 28.665 hybrid contribution 1.437 0.276 0.088 1.466 sum -25.224 -10.043 -1.998 27.223 Atomic orbital electron populations 1.21756 0.93686 1.02360 1.03127 1.22529 0.95436 0.83465 1.00358 1.87803 1.19042 1.26818 1.94134 1.22991 0.81575 0.94986 1.03566 0.86927 1.24070 1.02897 1.03051 0.94646 1.22870 0.93871 0.99897 0.91856 0.86756 1.60127 1.02755 1.50104 1.15482 1.20881 0.94850 0.93062 0.93510 1.19367 0.93547 0.96834 0.95679 1.20770 0.97775 1.00937 0.97232 1.20902 0.92121 0.98039 0.98908 1.21409 1.00165 1.02072 0.99193 1.19146 0.87647 0.91275 0.92165 1.86170 1.15774 1.65809 1.55194 1.23330 0.81522 1.00422 0.95600 1.19130 0.89371 0.95858 0.96873 1.21013 0.92388 1.29139 1.13933 0.92296 1.24989 0.99236 0.94861 0.95092 1.69983 1.27607 1.30310 1.24836 0.86430 0.83037 0.78141 0.79780 1.19631 1.20832 1.20827 1.20280 0.90137 1.04617 1.02453 0.90971 0.91801 0.91893 0.93222 0.93008 0.87996 0.87813 0.83079 0.93744 0.89876 0.86333 0.86141 0.85250 0.93136 0.93120 0.95403 0.95400 0.92757 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.06 0.41 6.53 37.16 0.24 0.66 16 3 O -0.36 -3.47 10.60 -35.23 -0.37 -3.84 16 4 C 0.03 0.25 6.37 -26.73 -0.17 0.08 16 5 H 0.11 0.94 7.93 -51.93 -0.41 0.53 16 6 C -0.21 -1.66 10.18 -26.73 -0.27 -1.94 16 7 C 0.03 0.23 6.26 -67.72 -0.42 -0.19 16 8 H 0.11 1.02 7.90 -51.93 -0.41 0.61 16 9 N -0.65 -6.32 6.77 -107.99 -0.73 -7.05 16 10 C 0.11 1.05 5.66 -4.98 -0.03 1.02 16 11 C -0.05 -0.67 5.39 -104.65 -0.56 -1.24 16 12 C -0.15 -1.83 9.70 -39.56 -0.38 -2.21 16 13 C -0.08 -1.07 10.04 -39.61 -0.40 -1.47 16 14 C -0.21 -3.27 9.04 -39.43 -0.36 -3.63 16 15 C 0.14 2.50 6.69 -39.22 -0.26 2.24 16 16 O -0.32 -6.50 10.14 -19.44 -0.20 -6.69 16 17 C 0.07 1.40 4.68 37.16 0.17 1.57 16 18 C 0.02 0.65 5.34 -27.88 -0.15 0.50 16 19 C -0.53 -14.67 9.11 -34.44 -0.31 -14.98 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 23 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C -0.16 -2.30 9.64 -39.44 -0.38 -2.68 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 0.75 8.09 -51.93 -0.42 0.33 16 35 H 0.35 3.35 8.51 -39.29 -0.33 3.01 16 36 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 37 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 38 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 39 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 40 H 0.13 1.99 6.30 -52.48 -0.33 1.66 16 41 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 42 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 387.58 15.07 5.84 5.84 Total: -1.00 -30.57 387.58 -10.48 -41.05 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.73 Total: 1.28 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -3.00 Total: -21.12 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.01 Total: -32.72 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.57 Total: -10.53 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.57 -10.48 -41.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567065418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.237 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds